RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 H1FX-AS1Q4G0G2 97 aa6.72□□□□□ -1.33
HMGB1-202ENST00000339872 S4R3F8 94 aa6.72□□□□□ -1.33
HMGB1-202ENST00000339872 A0A1B0GU69 56 aa6.71□□□□□ -1.33
HMGB1-202ENST00000339872 LCA10Q71F78 164 aa6.71□□□□□ -1.33
HMGB1-202ENST00000339872 HMCN2Q8NDA2 5059 aa6.7□□□□□ -1.34
HMGB1-202ENST00000339872 MUC17Q685J3 4493 aa6.68□□□□□ -1.34
HMGB1-202ENST00000339872 KRTAP3-3Q9BYR6 98 aa6.67□□□□□ -1.34
HMGB1-202ENST00000339872 BRK1Q8WUW1 75 aa6.64□□□□□ -1.35
HMGB1-202ENST00000339872 SEC61GP60059 68 aa6.64□□□□□ -1.35
HMGB1-202ENST00000339872 A6NED7 52 aa6.63□□□□□ -1.35
HMGB1-202ENST00000339872 KRTAP19-2Q3LHN2 52 aa6.54□□□□□ -1.36
HMGB1-202ENST00000339872 CSAG1Q6PB30 78 aa6.53□□□□□ -1.36
HMGB1-202ENST00000339872 A8MU10 97 aa6.53□□□□□ -1.36
HMGB1-202ENST00000339872 MUC2Q02817 5179 aa6.52□□□□□ -1.37
HMGB1-202ENST00000339872 UQCR11O14957 56 aa6.51□□□□□ -1.37
HMGB1-202ENST00000339872 PRO0628Q9UI54 55 aa6.5□□□□□ -1.37
HMGB1-202ENST00000339872 CDC42SE1Q9NRR8 79 aa6.5□□□□□ -1.37
HMGB1-202ENST00000339872 A0A1B0GU33 70 aa6.47□□□□□ -1.37
HMGB1-202ENST00000339872 MIR22HGQ0VDD5 57 aa6.46□□□□□ -1.38
HMGB1-202ENST00000339872 KRTAP10-6P60371 365 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-202ENST00000339872 KRTAP3-2Q9BYR7 98 aa6.45□□□□□ -1.38
HMGB1-202ENST00000339872 ADM2Q7Z4H4 148 aa6.44□□□□□ -1.38
HMGB1-202ENST00000339872 SPATA8Q6RVD6 105 aa6.43□□□□□ -1.38
HMGB1-202ENST00000339872 P0C880 135 aa6.42□□□□□ -1.38
HMGB1-202ENST00000339872 UBR4Q5T4S7 5183 aa6.41□□□□□ -1.38
HMGB1-202ENST00000339872 H0YAA0 97 aa6.39□□□□□ -1.39
HMGB1-202ENST00000339872 LCE2CQ5TA81 110 aa6.36□□□□□ -1.39
HMGB1-202ENST00000339872 RNF213Q63HN8 5207 aa6.36□□□□□ -1.39
HMGB1-202ENST00000339872 FLGP20930 4061 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-202ENST00000339872 KRTAP13-4Q3LI77 160 aa6.32□□□□□ -1.4
HMGB1-202ENST00000339872 PMAIP1Q13794 54 aa6.26□□□□□ -1.41
HMGB1-202ENST00000339872 FAT4Q6V0I7 4981 aa6.25□□□□□ -1.41
HMGB1-202ENST00000339872 MT1HP80294 61 aa6.24□□□□□ -1.41
HMGB1-202ENST00000339872 A0A0D9SG42 100 aa6.24□□□□□ -1.41
HMGB1-202ENST00000339872 M0R2T5 61 aa6.22□□□□□ -1.41
HMGB1-202ENST00000339872 M0QZ58 72 aa6.22□□□□□ -1.41
HMGB1-202ENST00000339872 LORP23490 312 aaPredicted RBP6.2□□□□□ -1.42
HMGB1-202ENST00000339872 R4GN34 69 aa6.2□□□□□ -1.42
HMGB1-202ENST00000339872 A6NN06 94 aa6.2□□□□□ -1.42
HMGB1-202ENST00000339872 SVIPQ8NHG7 77 aa6.14□□□□□ -1.43
HMGB1-202ENST00000339872 K7ERS5 55 aa6.14□□□□□ -1.43
HMGB1-202ENST00000339872 LINC01554Q52M75 96 aa6.13□□□□□ -1.43
HMGB1-202ENST00000339872 KRTAP12-2P59991 146 aa6.08□□□□□ -1.44
HMGB1-202ENST00000339872 KRTAP12-1P59990 96 aa6.07□□□□□ -1.44
HMGB1-202ENST00000339872 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
HMGB1-202ENST00000339872 CRIPTQ9P021 101 aa6.06□□□□□ -1.44
HMGB1-202ENST00000339872 KTN1-AS1Q86SY8 53 aa6.02□□□□□ -1.45
HMGB1-202ENST00000339872 MT2AP02795 61 aa6.02□□□□□ -1.45
HMGB1-202ENST00000339872 KRTAP9-8Q9BYQ0 159 aa6.01□□□□□ -1.45
HMGB1-202ENST00000339872 MT1FP04733 61 aa5.99□□□□□ -1.45
HMGB1-202ENST00000339872 KRTAP10-10P60014 251 aa5.98□□□□□ -1.45
HMGB1-202ENST00000339872 SPRR2GQ9BYE4 73 aa5.92□□□□□ -1.46
HMGB1-202ENST00000339872 KRTAP19-1Q8IUB9 90 aa5.91□□□□□ -1.46
HMGB1-202ENST00000339872 ROMO1P60602 79 aa5.9□□□□□ -1.46
HMGB1-202ENST00000339872 LCE2AQ5TA79 106 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-202ENST00000339872 PRAC1Q96KF2 57 aa5.88□□□□□ -1.47
HMGB1-202ENST00000339872 CAMK2N1Q7Z7J9 78 aa5.83□□□□□ -1.48
HMGB1-202ENST00000339872 LCE2DQ5TA82 110 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-202ENST00000339872 KRTAP9-3Q9BYQ3 159 aa5.79□□□□□ -1.48
HMGB1-202ENST00000339872 PLAC4Q8WY50 150 aa5.77□□□□□ -1.49
HMGB1-202ENST00000339872 KRTAP19-8Q3LI54 63 aa5.75□□□□□ -1.49
HMGB1-202ENST00000339872 C10orf95Q9H7T3 257 aa5.74□□□□□ -1.49
HMGB1-202ENST00000339872 MT1BP07438 61 aa5.69□□□□□ -1.5
HMGB1-202ENST00000339872 KRTAP25-1Q3LHN0 102 aa5.69□□□□□ -1.5
HMGB1-202ENST00000339872 LCE2BO14633 110 aa5.63□□□□□ -1.51
HMGB1-202ENST00000339872 TNP1P09430 55 aa5.54□□□□□ -1.52
HMGB1-202ENST00000339872 MT1XP80297 61 aa5.53□□□□□ -1.52
HMGB1-202ENST00000339872 KRTAP10-5P60370 271 aa5.52□□□□□ -1.53
HMGB1-202ENST00000339872 PRO2289Q9P1D8 64 aa5.45□□□□□ -1.54
HMGB1-202ENST00000339872 USH2AO75445 5202 aa5.41□□□□□ -1.54
HMGB1-202ENST00000339872 PP632Q6XCG6 107 aa5.41□□□□□ -1.54
HMGB1-202ENST00000339872 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
HMGB1-202ENST00000339872 KRTAP10-7P60409 375 aaPredicted RBP5.33□□□□□ -1.56
HMGB1-202ENST00000339872 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
HMGB1-202ENST00000339872 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
HMGB1-202ENST00000339872 SSPOA2VEC9 5147 aa5.25□□□□□ -1.57
HMGB1-202ENST00000339872 LOC100996750A0A140TA64 210 aa5.24□□□□□ -1.57
HMGB1-202ENST00000339872 KRTAP4-6Q9BYQ5 205 aa5.24□□□□□ -1.57
HMGB1-202ENST00000339872 KRTAP19-6Q3LI70 58 aa5.23□□□□□ -1.57
HMGB1-202ENST00000339872 FSIP2Q5CZC0 6907 aa5.17□□□□□ -1.58
HMGB1-202ENST00000339872 KRTAP8-1Q8IUC2 63 aa5.17□□□□□ -1.58
HMGB1-202ENST00000339872 KRTAP4-8A0A0G2JLE6 195 aa5.1□□□□□ -1.59
HMGB1-202ENST00000339872 KRTAP4-8Q9BYQ9 185 aa5.1□□□□□ -1.59
HMGB1-202ENST00000339872 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
HMGB1-202ENST00000339872 KRTAP9-2Q9BYQ4 174 aa5.08□□□□□ -1.6
HMGB1-202ENST00000339872 KMT2DO14686 5537 aa5.07□□□□□ -1.6
HMGB1-202ENST00000339872 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
HMGB1-202ENST00000339872 KRTAP19-5Q3LI72 72 aa5.03□□□□□ -1.6
HMGB1-202ENST00000339872 FCGBPQ9Y6R7 5405 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-202ENST00000339872 KRTAP19-7Q3SYF9 63 aa4.92□□□□□ -1.62
HMGB1-202ENST00000339872 CRCT1Q9UGL9 99 aa4.91□□□□□ -1.62
HMGB1-202ENST00000339872 SPRR5A0A1B0GTR4 108 aa4.83□□□□□ -1.64
HMGB1-202ENST00000339872 MT1EP04732 61 aa4.83□□□□□ -1.64
HMGB1-202ENST00000339872 MT1LQ93083 61 aa4.75□□□□□ -1.65
HMGB1-202ENST00000339872 LUZP6Q538Z0 58 aa4.74□□□□□ -1.65
HMGB1-202ENST00000339872 LCE3CQ5T5A8 94 aa4.74□□□□□ -1.65
HMGB1-202ENST00000339872 MACF1Q9UPN3 7388 aaKnown RBP4.74□□□□□ -1.65
HMGB1-202ENST00000339872 NDUFAF8A1L188 74 aa4.73□□□□□ -1.65
HMGB1-202ENST00000339872 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
HMGB1-202ENST00000339872 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms