RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 LCE4AQ5TA78 99 aa6.62□□□□□ -1.35
LIMS1-201ENST00000332345 OCR1Q9BZK8 76 aa6.62□□□□□ -1.35
LIMS1-201ENST00000332345 SCGB1A1P11684 91 aa6.61□□□□□ -1.35
LIMS1-201ENST00000332345 MP68P56378 58 aa6.61□□□□□ -1.35
LIMS1-201ENST00000332345 CSAG1Q6PB30 78 aa6.61□□□□□ -1.35
LIMS1-201ENST00000332345 LINC00208Q96KT6 92 aa6.6□□□□□ -1.35
LIMS1-201ENST00000332345 LCA10Q71F78 164 aa6.58□□□□□ -1.36
LIMS1-201ENST00000332345 IMUPQ9GZP8 106 aa6.58□□□□□ -1.36
LIMS1-201ENST00000332345 KRTAP9-7A8MTY7 169 aa6.57□□□□□ -1.36
LIMS1-201ENST00000332345 USH2AO75445 5202 aa6.55□□□□□ -1.36
LIMS1-201ENST00000332345 H3BPC8 53 aa6.54□□□□□ -1.36
LIMS1-201ENST00000332345 KLKP1Q107X0 134 aa6.52□□□□□ -1.37
LIMS1-201ENST00000332345 A8MUN3 132 aa6.51□□□□□ -1.37
LIMS1-201ENST00000332345 MT-ATP8P03928 68 aa6.51□□□□□ -1.37
LIMS1-201ENST00000332345 FAM236AA0A1B0GUQ0 79 aa6.5□□□□□ -1.37
LIMS1-201ENST00000332345 FAM236BA0A1B0GV22 79 aa6.5□□□□□ -1.37
LIMS1-201ENST00000332345 KRTAP23-1A1A580 65 aa6.49□□□□□ -1.37
LIMS1-201ENST00000332345 NDUFC1O43677 76 aa6.47□□□□□ -1.37
LIMS1-201ENST00000332345 SMIM20Q8N5G0 67 aa6.47□□□□□ -1.37
LIMS1-201ENST00000332345 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
LIMS1-201ENST00000332345 SSPOA2VEC9 5147 aa6.45□□□□□ -1.38
LIMS1-201ENST00000332345 TRAV7A0A075B6U4 112 aa6.42□□□□□ -1.38
LIMS1-201ENST00000332345 LCE1DQ5T752 114 aa6.39□□□□□ -1.39
LIMS1-201ENST00000332345 DMAC1Q96GE9 116 aa6.35□□□□□ -1.39
LIMS1-201ENST00000332345 H0YAA0 97 aa6.34□□□□□ -1.39
LIMS1-201ENST00000332345 CRIPTQ9P021 101 aa6.33□□□□□ -1.4
LIMS1-201ENST00000332345 FCGBPQ9Y6R7 5405 aaPredicted RBP6.32□□□□□ -1.4
LIMS1-201ENST00000332345 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
LIMS1-201ENST00000332345 SPRR2GQ9BYE4 73 aa6.32□□□□□ -1.4
LIMS1-201ENST00000332345 ACYP2P14621 99 aa6.28□□□□□ -1.4
LIMS1-201ENST00000332345 Q5VV11 94 aa6.27□□□□□ -1.41
LIMS1-201ENST00000332345 ADM2Q7Z4H4 148 aa6.27□□□□□ -1.41
LIMS1-201ENST00000332345 SERP2Q8N6R1 65 aa6.26□□□□□ -1.41
LIMS1-201ENST00000332345 SNURFQ9Y675 71 aa6.25□□□□□ -1.41
LIMS1-201ENST00000332345 KRTAP19-8Q3LI54 63 aa6.24□□□□□ -1.41
LIMS1-201ENST00000332345 C20orf197Q8N268 126 aa6.22□□□□□ -1.41
LIMS1-201ENST00000332345 MT1BP07438 61 aa6.2□□□□□ -1.42
LIMS1-201ENST00000332345 KRTAP4-7Q9BYR0 210 aa6.2□□□□□ -1.42
LIMS1-201ENST00000332345 SPTSSBQ8NFR3 76 aa6.19□□□□□ -1.42
LIMS1-201ENST00000332345 LCE5AQ5TCM9 118 aa6.18□□□□□ -1.42
LIMS1-201ENST00000332345 SPANXA2-OT1Q8N9U9 137 aa6.17□□□□□ -1.42
LIMS1-201ENST00000332345 CHKB-CPT1BH3BT56 60 aa6.15□□□□□ -1.42
LIMS1-201ENST00000332345 KRTAP4-9Q9BYQ8 210 aa6.15□□□□□ -1.42
LIMS1-201ENST00000332345 A6NN06 94 aa6.13□□□□□ -1.43
LIMS1-201ENST00000332345 P0C880 135 aa6.12□□□□□ -1.43
LIMS1-201ENST00000332345 R4GN34 69 aa6.12□□□□□ -1.43
LIMS1-201ENST00000332345 MACF1Q9UPN3 7388 aaKnown RBP6.11□□□□□ -1.43
LIMS1-201ENST00000332345 COX7CP15954 63 aa6.1□□□□□ -1.43
LIMS1-201ENST00000332345 M0QZ58 72 aa6.05□□□□□ -1.44
LIMS1-201ENST00000332345 KRTAP10-5P60370 271 aa6.05□□□□□ -1.44
LIMS1-201ENST00000332345 PLAC4Q8WY50 150 aa6.03□□□□□ -1.44
LIMS1-201ENST00000332345 SYNE2Q8WXH0 6885 aaKnown RBP6□□□□□ -1.45
LIMS1-201ENST00000332345 KRTAP4-11Q9BYQ6 195 aa5.99□□□□□ -1.45
LIMS1-201ENST00000332345 SVIPQ8NHG7 77 aa5.98□□□□□ -1.45
LIMS1-201ENST00000332345 ANAPC13Q9BS18 74 aa5.98□□□□□ -1.45
LIMS1-201ENST00000332345 LINC01554Q52M75 96 aa5.97□□□□□ -1.45
LIMS1-201ENST00000332345 COA5Q86WW8 74 aa5.97□□□□□ -1.45
LIMS1-201ENST00000332345 H7BZZ5 65 aa5.96□□□□□ -1.46
LIMS1-201ENST00000332345 KRTAP15-1Q3LI76 137 aa5.95□□□□□ -1.46
LIMS1-201ENST00000332345 PRO2289Q9P1D8 64 aa5.95□□□□□ -1.46
LIMS1-201ENST00000332345 KRTAP4-2Q9BYR5 136 aa5.92□□□□□ -1.46
LIMS1-201ENST00000332345 CYSTM1Q9H1C7 97 aa5.92□□□□□ -1.46
LIMS1-201ENST00000332345 KRTAP6-3Q3LI67 103 aa5.91□□□□□ -1.46
LIMS1-201ENST00000332345 SEC61GP60059 68 aa5.88□□□□□ -1.47
LIMS1-201ENST00000332345 MT1XP80297 61 aa5.86□□□□□ -1.47
LIMS1-201ENST00000332345 SERP1Q9Y6X1 66 aa5.85□□□□□ -1.47
LIMS1-201ENST00000332345 CCDC179H3BU77 68 aa5.82□□□□□ -1.48
LIMS1-201ENST00000332345 KRTAP13-4Q3LI77 160 aa5.77□□□□□ -1.49
LIMS1-201ENST00000332345 ATP5EP56381 51 aaPredicted RBP5.75□□□□□ -1.49
LIMS1-201ENST00000332345 A0A1B0GU33 70 aa5.73□□□□□ -1.49
LIMS1-201ENST00000332345 KRTAP12-2P59991 146 aa5.72□□□□□ -1.49
LIMS1-201ENST00000332345 KMT2DO14686 5537 aa5.7□□□□□ -1.5
LIMS1-201ENST00000332345 A0A1B0GU69 56 aa5.69□□□□□ -1.5
LIMS1-201ENST00000332345 KRTAP5-9P26371 169 aa5.69□□□□□ -1.5
LIMS1-201ENST00000332345 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
LIMS1-201ENST00000332345 SPATA8Q6RVD6 105 aa5.66□□□□□ -1.5
LIMS1-201ENST00000332345 CAMK2N1Q7Z7J9 78 aa5.66□□□□□ -1.5
LIMS1-201ENST00000332345 A0A0D9SG42 100 aa5.65□□□□□ -1.5
LIMS1-201ENST00000332345 TMEM258P61165 79 aa5.64□□□□□ -1.51
LIMS1-201ENST00000332345 KRTAP8-1Q8IUC2 63 aa5.62□□□□□ -1.51
LIMS1-201ENST00000332345 KRTAP10-7P60409 375 aaPredicted RBP5.6□□□□□ -1.51
LIMS1-201ENST00000332345 PRR15LQ9BU68 103 aa5.6□□□□□ -1.51
LIMS1-201ENST00000332345 NEBP20929 6669 aa5.6□□□□□ -1.51
LIMS1-201ENST00000332345 KRTAP10-12P60413 245 aa5.59□□□□□ -1.51
LIMS1-201ENST00000332345 SMIM26A0A096LP01 95 aa5.58□□□□□ -1.52
LIMS1-201ENST00000332345 SPINT4Q6UDR6 99 aa5.58□□□□□ -1.52
LIMS1-201ENST00000332345 PCP4P48539 62 aa5.57□□□□□ -1.52
LIMS1-201ENST00000332345 SPRR2FQ96RM1 72 aa5.57□□□□□ -1.52
LIMS1-201ENST00000332345 MDN1Q9NU22 5596 aa5.56□□□□□ -1.52
LIMS1-201ENST00000332345 LINC01558Q9Y6Z2 57 aa5.55□□□□□ -1.52
LIMS1-201ENST00000332345 KRTAP12-1P59990 96 aa5.52□□□□□ -1.53
LIMS1-201ENST00000332345 KRTAP5-3Q6L8H2 238 aa5.5□□□□□ -1.53
LIMS1-201ENST00000332345 A8MU10 97 aa5.47□□□□□ -1.53
LIMS1-201ENST00000332345 SPRR2EP22531 72 aa5.46□□□□□ -1.54
LIMS1-201ENST00000332345 SPRR2BP35325 72 aa5.46□□□□□ -1.54
LIMS1-201ENST00000332345 SPRR2AP35326 72 aa5.46□□□□□ -1.54
LIMS1-201ENST00000332345 UQCR11O14957 56 aa5.4□□□□□ -1.54
LIMS1-201ENST00000332345 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
LIMS1-201ENST00000332345 LCE1AQ5T7P2 110 aa5.39□□□□□ -1.55
LIMS1-201ENST00000332345 A0A0A0MQY5 61 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms