RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 CHKB-CPT1BH3BT56 60 aa8.41□□□□□ -1.06
PDLIM1-201ENST00000329399 V9GYY9 64 aa8.41□□□□□ -1.06
PDLIM1-201ENST00000329399 SPTSSBQ8NFR3 76 aa8.36□□□□□ -1.07
PDLIM1-201ENST00000329399 Q1T7F1 81 aa8.34□□□□□ -1.07
PDLIM1-201ENST00000329399 RBM12B-AS1Q9P1G2 102 aa8.34□□□□□ -1.07
PDLIM1-201ENST00000329399 MPLKIPQ8TAP9 179 aa8.32□□□□□ -1.08
PDLIM1-201ENST00000329399 KRTAP9-2Q9BYQ4 174 aa8.32□□□□□ -1.08
PDLIM1-201ENST00000329399 KRTAP3-1Q9BYR8 98 aa8.32□□□□□ -1.08
PDLIM1-201ENST00000329399 H1FX-AS1Q4G0G2 97 aa8.24□□□□□ -1.09
PDLIM1-201ENST00000329399 LINC01558Q9Y6Z2 57 aa8.24□□□□□ -1.09
PDLIM1-201ENST00000329399 LORP23490 312 aaPredicted RBP8.22□□□□□ -1.09
PDLIM1-201ENST00000329399 KRTAP10-6P60371 365 aaPredicted RBP8.22□□□□□ -1.09
PDLIM1-201ENST00000329399 M0R2T5 61 aa8.19□□□□□ -1.1
PDLIM1-201ENST00000329399 S4R3F8 94 aa8.16□□□□□ -1.1
PDLIM1-201ENST00000329399 PRR15LQ9BU68 103 aa8.15□□□□□ -1.1
PDLIM1-201ENST00000329399 LCE2DQ5TA82 110 aaPredicted RBP8.12□□□□□ -1.11
PDLIM1-201ENST00000329399 SEC61GP60059 68 aa8.1□□□□□ -1.11
PDLIM1-201ENST00000329399 A0A1B0GU69 56 aa8.07□□□□□ -1.12
PDLIM1-201ENST00000329399 LCA10Q71F78 164 aa8.07□□□□□ -1.12
PDLIM1-201ENST00000329399 FSIP2Q5CZC0 6907 aa8.07□□□□□ -1.12
PDLIM1-201ENST00000329399 PSPHP1O15172 72 aa8.05□□□□□ -1.12
PDLIM1-201ENST00000329399 CSAG1Q6PB30 78 aa8.03□□□□□ -1.12
PDLIM1-201ENST00000329399 KRTAP3-3Q9BYR6 98 aa8.03□□□□□ -1.12
PDLIM1-201ENST00000329399 KRTAP9-8Q9BYQ0 159 aa8.02□□□□□ -1.13
PDLIM1-201ENST00000329399 Q5VV11 94 aa8.01□□□□□ -1.13
PDLIM1-201ENST00000329399 KRTAP9-6A0A140TA67 174 aa7.95□□□□□ -1.14
PDLIM1-201ENST00000329399 H0YAA0 97 aa7.9□□□□□ -1.14
PDLIM1-201ENST00000329399 MT2AP02795 61 aa7.9□□□□□ -1.14
PDLIM1-201ENST00000329399 A6NED7 52 aa7.88□□□□□ -1.15
PDLIM1-201ENST00000329399 UQCR11O14957 56 aa7.88□□□□□ -1.15
PDLIM1-201ENST00000329399 MT1FP04733 61 aa7.86□□□□□ -1.15
PDLIM1-201ENST00000329399 CRCT1Q9UGL9 99 aa7.86□□□□□ -1.15
PDLIM1-201ENST00000329399 USH2AO75445 5202 aa7.83□□□□□ -1.16
PDLIM1-201ENST00000329399 A0A1B0GU33 70 aa7.81□□□□□ -1.16
PDLIM1-201ENST00000329399 CDC42SE1Q9NRR8 79 aa7.8□□□□□ -1.16
PDLIM1-201ENST00000329399 BRK1Q8WUW1 75 aa7.79□□□□□ -1.16
PDLIM1-201ENST00000329399 KRTAP10-10P60014 251 aa7.76□□□□□ -1.17
PDLIM1-201ENST00000329399 SPATA8Q6RVD6 105 aa7.76□□□□□ -1.17
PDLIM1-201ENST00000329399 KRTAP3-2Q9BYR7 98 aa7.76□□□□□ -1.17
PDLIM1-201ENST00000329399 MIR22HGQ0VDD5 57 aa7.75□□□□□ -1.17
PDLIM1-201ENST00000329399 ADM2Q7Z4H4 148 aa7.75□□□□□ -1.17
PDLIM1-201ENST00000329399 KRTAP9-3Q9BYQ3 159 aa7.75□□□□□ -1.17
PDLIM1-201ENST00000329399 SSPOA2VEC9 5147 aa7.75□□□□□ -1.17
PDLIM1-201ENST00000329399 PRO0628Q9UI54 55 aa7.74□□□□□ -1.17
PDLIM1-201ENST00000329399 LCE2BO14633 110 aa7.72□□□□□ -1.17
PDLIM1-201ENST00000329399 M0QZ58 72 aa7.67□□□□□ -1.18
PDLIM1-201ENST00000329399 P0C880 135 aa7.67□□□□□ -1.18
PDLIM1-201ENST00000329399 SVIPQ8NHG7 77 aa7.66□□□□□ -1.18
PDLIM1-201ENST00000329399 CRIPTQ9P021 101 aa7.59□□□□□ -1.19
PDLIM1-201ENST00000329399 R4GN34 69 aa7.54□□□□□ -1.2
PDLIM1-201ENST00000329399 FCGBPQ9Y6R7 5405 aaPredicted RBP7.54□□□□□ -1.2
PDLIM1-201ENST00000329399 K7ERS5 55 aa7.51□□□□□ -1.21
PDLIM1-201ENST00000329399 A8MU10 97 aa7.5□□□□□ -1.21
PDLIM1-201ENST00000329399 KRTAP13-4Q3LI77 160 aa7.49□□□□□ -1.21
PDLIM1-201ENST00000329399 KRTAP19-1Q8IUB9 90 aa7.48□□□□□ -1.21
PDLIM1-201ENST00000329399 PMAIP1Q13794 54 aa7.42□□□□□ -1.22
PDLIM1-201ENST00000329399 A6NN06 94 aa7.38□□□□□ -1.23
PDLIM1-201ENST00000329399 A0A0D9SG42 100 aa7.37□□□□□ -1.23
PDLIM1-201ENST00000329399 KRTAP19-6Q3LI70 58 aa7.34□□□□□ -1.23
PDLIM1-201ENST00000329399 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.32□□□□□ -1.24
PDLIM1-201ENST00000329399 SPRR2GQ9BYE4 73 aa7.3□□□□□ -1.24
PDLIM1-201ENST00000329399 KRTAP12-1P59990 96 aa7.29□□□□□ -1.24
PDLIM1-201ENST00000329399 LINC01554Q52M75 96 aa7.28□□□□□ -1.24
PDLIM1-201ENST00000329399 SPINT4Q6UDR6 99 aa7.25□□□□□ -1.25
PDLIM1-201ENST00000329399 MT1BP07438 61 aa7.24□□□□□ -1.25
PDLIM1-201ENST00000329399 KRTAP12-2P59991 146 aa7.23□□□□□ -1.25
PDLIM1-201ENST00000329399 MACF1Q9UPN3 7388 aaKnown RBP7.21□□□□□ -1.25
PDLIM1-201ENST00000329399 KRTAP19-8Q3LI54 63 aa7.21□□□□□ -1.26
PDLIM1-201ENST00000329399 KRTAP9-7A8MTY7 169 aa7.17□□□□□ -1.26
PDLIM1-201ENST00000329399 SYNE2Q8WXH0 6885 aaKnown RBP7.14□□□□□ -1.27
PDLIM1-201ENST00000329399 KTN1-AS1Q86SY8 53 aa7.14□□□□□ -1.27
PDLIM1-201ENST00000329399 ROMO1P60602 79 aa7.11□□□□□ -1.27
PDLIM1-201ENST00000329399 PLAC4Q8WY50 150 aa7.1□□□□□ -1.27
PDLIM1-201ENST00000329399 CAMK2N1Q7Z7J9 78 aa7.05□□□□□ -1.28
PDLIM1-201ENST00000329399 KRTAP10-5P60370 271 aa7□□□□□ -1.29
PDLIM1-201ENST00000329399 C10orf95Q9H7T3 257 aa6.87□□□□□ -1.31
PDLIM1-201ENST00000329399 KRTAP6-3Q3LI67 103 aa6.86□□□□□ -1.31
PDLIM1-201ENST00000329399 KRTAP25-1Q3LHN0 102 aa6.85□□□□□ -1.31
PDLIM1-201ENST00000329399 MT1XP80297 61 aa6.83□□□□□ -1.32
PDLIM1-201ENST00000329399 KMT2DO14686 5537 aa6.8□□□□□ -1.32
PDLIM1-201ENST00000329399 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
PDLIM1-201ENST00000329399 PRAC1Q96KF2 57 aa6.79□□□□□ -1.32
PDLIM1-201ENST00000329399 MUC12Q9UKN1 5478 aa6.77□□□□□ -1.33
PDLIM1-201ENST00000329399 TNP1P09430 55 aa6.77□□□□□ -1.33
PDLIM1-201ENST00000329399 KRTAP23-1A1A580 65 aa6.71□□□□□ -1.34
PDLIM1-201ENST00000329399 PP632Q6XCG6 107 aa6.69□□□□□ -1.34
PDLIM1-201ENST00000329399 NEBP20929 6669 aa6.65□□□□□ -1.34
PDLIM1-201ENST00000329399 MDN1Q9NU22 5596 aa6.65□□□□□ -1.35
PDLIM1-201ENST00000329399 KRTAP5-9P26371 169 aa6.62□□□□□ -1.35
PDLIM1-201ENST00000329399 KRTAP4-8A0A0G2JLE6 195 aa6.54□□□□□ -1.36
PDLIM1-201ENST00000329399 KRTAP4-8Q9BYQ9 185 aa6.54□□□□□ -1.36
PDLIM1-201ENST00000329399 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
PDLIM1-201ENST00000329399 SPRR2FQ96RM1 72 aa6.46□□□□□ -1.38
PDLIM1-201ENST00000329399 KRTAP10-12P60413 245 aa6.45□□□□□ -1.38
PDLIM1-201ENST00000329399 KRTAP8-1Q8IUC2 63 aa6.45□□□□□ -1.38
PDLIM1-201ENST00000329399 LCE3AQ5TA76 89 aa6.34□□□□□ -1.4
PDLIM1-201ENST00000329399 SPRR2EP22531 72 aa6.32□□□□□ -1.4
PDLIM1-201ENST00000329399 SPRR2BP35325 72 aa6.32□□□□□ -1.4
PDLIM1-201ENST00000329399 SPRR2AP35326 72 aa6.32□□□□□ -1.4
PDLIM1-201ENST00000329399 LCE1AQ5T7P2 110 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms