RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 HERC1Q15751 4861 aa9.76□□□□□ -0.85
USP39-201ENST00000323701 C7orf65Q6ZTY9 151 aa9.74□□□□□ -0.85
USP39-201ENST00000323701 TPRXLQ17RH7 258 aa9.73□□□□□ -0.85
USP39-201ENST00000323701 RBM12B-AS1Q9P1G2 102 aa9.71□□□□□ -0.85
USP39-201ENST00000323701 SPINK7P58062 85 aa9.7□□□□□ -0.86
USP39-201ENST00000323701 DMAC1Q96GE9 116 aa9.63□□□□□ -0.87
USP39-201ENST00000323701 ACYP2P14621 99 aa9.6□□□□□ -0.87
USP39-201ENST00000323701 KRTAP3-1Q9BYR8 98 aa9.57□□□□□ -0.88
USP39-201ENST00000323701 HMCN2Q8NDA2 5059 aa9.56□□□□□ -0.88
USP39-201ENST00000323701 COX6B2Q6YFQ2 88 aa9.43□□□□□ -0.9
USP39-201ENST00000323701 MUC17Q685J3 4493 aa9.42□□□□□ -0.9
USP39-201ENST00000323701 MUC2Q02817 5179 aa9.41□□□□□ -0.9
USP39-201ENST00000323701 KRTAP4-1Q9BYQ7 146 aa9.38□□□□□ -0.91
USP39-201ENST00000323701 A0A1B0GU69 56 aa9.37□□□□□ -0.91
USP39-201ENST00000323701 SPATA8Q6RVD6 105 aa9.35□□□□□ -0.91
USP39-201ENST00000323701 SEC61BP60468 96 aaKnown RBP9.34□□□□□ -0.91
USP39-201ENST00000323701 PRAC1Q96KF2 57 aa9.31□□□□□ -0.92
USP39-201ENST00000323701 UQCR11O14957 56 aa9.26□□□□□ -0.93
USP39-201ENST00000323701 MIR22HGQ0VDD5 57 aa9.26□□□□□ -0.93
USP39-201ENST00000323701 ADM2Q7Z4H4 148 aa9.26□□□□□ -0.93
USP39-201ENST00000323701 UBR4Q5T4S7 5183 aa9.23□□□□□ -0.93
USP39-201ENST00000323701 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
USP39-201ENST00000323701 LINC01554Q52M75 96 aa9.19□□□□□ -0.94
USP39-201ENST00000323701 H1FX-AS1Q4G0G2 97 aa9.16□□□□□ -0.94
USP39-201ENST00000323701 RNF213Q63HN8 5207 aa9.13□□□□□ -0.95
USP39-201ENST00000323701 S4R3F8 94 aa9.13□□□□□ -0.95
USP39-201ENST00000323701 KRTAP19-2Q3LHN2 52 aa9.12□□□□□ -0.95
USP39-201ENST00000323701 CSAG1Q6PB30 78 aa9.02□□□□□ -0.97
USP39-201ENST00000323701 FAT4Q6V0I7 4981 aa8.98□□□□□ -0.97
USP39-201ENST00000323701 FLGP20930 4061 aaPredicted RBP8.98□□□□□ -0.97
USP39-201ENST00000323701 H0YAA0 97 aa8.92□□□□□ -0.98
USP39-201ENST00000323701 KRTAP3-2Q9BYR7 98 aa8.89□□□□□ -0.99
USP39-201ENST00000323701 KRTAP10-6P60371 365 aaPredicted RBP8.88□□□□□ -0.99
USP39-201ENST00000323701 A0A1B0GU33 70 aa8.85□□□□□ -0.99
USP39-201ENST00000323701 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
USP39-201ENST00000323701 P0C880 135 aa8.82□□□□□ -1
USP39-201ENST00000323701 H3BS24 57 aa8.77□□□□□ -1.01
USP39-201ENST00000323701 KRTAP25-1Q3LHN0 102 aa8.77□□□□□ -1.01
USP39-201ENST00000323701 KRTAP13-4Q3LI77 160 aa8.71□□□□□ -1.02
USP39-201ENST00000323701 MT1HP80294 61 aa8.63□□□□□ -1.03
USP39-201ENST00000323701 ROMO1P60602 79 aa8.62□□□□□ -1.03
USP39-201ENST00000323701 K7ERS5 55 aa8.61□□□□□ -1.03
USP39-201ENST00000323701 LORP23490 312 aaPredicted RBP8.61□□□□□ -1.03
USP39-201ENST00000323701 A0A0D9SG42 100 aa8.51□□□□□ -1.05
USP39-201ENST00000323701 M0R2T5 61 aa8.49□□□□□ -1.05
USP39-201ENST00000323701 CRIPTQ9P021 101 aa8.45□□□□□ -1.06
USP39-201ENST00000323701 M0QZ58 72 aa8.44□□□□□ -1.06
USP39-201ENST00000323701 R4GN34 69 aa8.42□□□□□ -1.06
USP39-201ENST00000323701 KRTAP9-8Q9BYQ0 159 aa8.34□□□□□ -1.07
USP39-201ENST00000323701 KRTAP12-2P59991 146 aa8.33□□□□□ -1.08
USP39-201ENST00000323701 MT2AP02795 61 aa8.31□□□□□ -1.08
USP39-201ENST00000323701 MT1FP04733 61 aa8.3□□□□□ -1.08
USP39-201ENST00000323701 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
USP39-201ENST00000323701 SPINT4Q6UDR6 99 aa8.25□□□□□ -1.09
USP39-201ENST00000323701 KRTAP10-10P60014 251 aa8.22□□□□□ -1.09
USP39-201ENST00000323701 LCE2AQ5TA79 106 aaPredicted RBP8.21□□□□□ -1.1
USP39-201ENST00000323701 KRTAP19-1Q8IUB9 90 aa8.18□□□□□ -1.1
USP39-201ENST00000323701 SPRR2GQ9BYE4 73 aa8.14□□□□□ -1.11
USP39-201ENST00000323701 C10orf95Q9H7T3 257 aa8.13□□□□□ -1.11
USP39-201ENST00000323701 KRTAP15-1Q3LI76 137 aa8.08□□□□□ -1.12
USP39-201ENST00000323701 KRTAP9-3Q9BYQ3 159 aa8.03□□□□□ -1.12
USP39-201ENST00000323701 NDUFAF8A1L188 74 aa7.96□□□□□ -1.14
USP39-201ENST00000323701 KRTAP19-8Q3LI54 63 aa7.9□□□□□ -1.14
USP39-201ENST00000323701 CAMK2N1Q7Z7J9 78 aa7.88□□□□□ -1.15
USP39-201ENST00000323701 MT1BP07438 61 aa7.87□□□□□ -1.15
USP39-201ENST00000323701 USH2AO75445 5202 aa7.83□□□□□ -1.16
USP39-201ENST00000323701 LCE2BO14633 110 aa7.83□□□□□ -1.16
USP39-201ENST00000323701 PLAC4Q8WY50 150 aa7.83□□□□□ -1.16
USP39-201ENST00000323701 MT1XP80297 61 aa7.64□□□□□ -1.19
USP39-201ENST00000323701 KRTAP10-5P60370 271 aa7.63□□□□□ -1.19
USP39-201ENST00000323701 FSIP2Q5CZC0 6907 aa7.56□□□□□ -1.2
USP39-201ENST00000323701 SSPOA2VEC9 5147 aa7.5□□□□□ -1.21
USP39-201ENST00000323701 TNP1P09430 55 aa7.49□□□□□ -1.21
USP39-201ENST00000323701 PP632Q6XCG6 107 aa7.4□□□□□ -1.22
USP39-201ENST00000323701 KRTAP10-7P60409 375 aaPredicted RBP7.37□□□□□ -1.23
USP39-201ENST00000323701 PRO2289Q9P1D8 64 aa7.36□□□□□ -1.23
USP39-201ENST00000323701 LCE2DQ5TA82 110 aaPredicted RBP7.32□□□□□ -1.24
USP39-201ENST00000323701 LUZP6Q538Z0 58 aa7.31□□□□□ -1.24
USP39-201ENST00000323701 KMT2DO14686 5537 aa7.3□□□□□ -1.24
USP39-201ENST00000323701 LCE3AQ5TA76 89 aa7.28□□□□□ -1.24
USP39-201ENST00000323701 KRTAP23-1A1A580 65 aa7.22□□□□□ -1.25
USP39-201ENST00000323701 KRTAP19-6Q3LI70 58 aa7.22□□□□□ -1.25
USP39-201ENST00000323701 KRTAP10-12P60413 245 aa7.21□□□□□ -1.26
USP39-201ENST00000323701 A0A0A0MQY5 61 aa7.16□□□□□ -1.26
USP39-201ENST00000323701 FCGBPQ9Y6R7 5405 aaPredicted RBP7.15□□□□□ -1.27
USP39-201ENST00000323701 KRTAP4-8A0A0G2JLE6 195 aa7.1□□□□□ -1.27
USP39-201ENST00000323701 KRTAP4-8Q9BYQ9 185 aa7.1□□□□□ -1.27
USP39-201ENST00000323701 KRTAP9-2Q9BYQ4 174 aa7.07□□□□□ -1.28
USP39-201ENST00000323701 KRTAP8-1Q8IUC2 63 aa7.06□□□□□ -1.28
USP39-201ENST00000323701 SPRR5A0A1B0GTR4 108 aa7.03□□□□□ -1.28
USP39-201ENST00000323701 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
USP39-201ENST00000323701 KRTAP19-5Q3LI72 72 aa6.92□□□□□ -1.3
USP39-201ENST00000323701 KRTAP19-7Q3SYF9 63 aa6.82□□□□□ -1.32
USP39-201ENST00000323701 MACF1Q9UPN3 7388 aaKnown RBP6.82□□□□□ -1.32
USP39-201ENST00000323701 CRCT1Q9UGL9 99 aa6.81□□□□□ -1.32
USP39-201ENST00000323701 MUC12Q9UKN1 5478 aa6.69□□□□□ -1.34
USP39-201ENST00000323701 SYNE2Q8WXH0 6885 aaKnown RBP6.68□□□□□ -1.34
USP39-201ENST00000323701 MT1EP04732 61 aa6.66□□□□□ -1.34
USP39-201ENST00000323701 MT1LQ93083 61 aa6.54□□□□□ -1.36
USP39-201ENST00000323701 LCE3CQ5T5A8 94 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms