RNA–Protein interactions for RNA: ENST00000317716.13

CDHR3-201, Transcript of cadherin related family member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDHR3, Length 3,813 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-201ENST00000317716 RYR1P21817 5038 aa4.03□□□□□ -1.76
CDHR3-201ENST00000317716 KRTAP1-4P0C5Y4 121 aa4.03□□□□□ -1.76
CDHR3-201ENST00000317716 LUZP6Q538Z0 58 aa4.02□□□□□ -1.77
CDHR3-201ENST00000317716 HECTD4Q9Y4D8 3996 aa4.01□□□□□ -1.77
CDHR3-201ENST00000317716 APOBP04114 4563 aaKnown RBP4.01□□□□□ -1.77
CDHR3-201ENST00000317716 C20orf166-AS1Q96NR2 134 aa4□□□□□ -1.77
CDHR3-201ENST00000317716 M0QZ58 72 aa3.99□□□□□ -1.77
CDHR3-201ENST00000317716 R4GN34 69 aa3.99□□□□□ -1.77
CDHR3-201ENST00000317716 VPS13BQ7Z7G8 4022 aa3.99□□□□□ -1.77
CDHR3-201ENST00000317716 CAMK2N1Q7Z7J9 78 aa3.99□□□□□ -1.77
CDHR3-201ENST00000317716 DNAH8Q96JB1 4490 aa3.98□□□□□ -1.77
CDHR3-201ENST00000317716 FAT2Q9NYQ8 4349 aa3.98□□□□□ -1.77
CDHR3-201ENST00000317716 MYCBP2O75592 4640 aa3.98□□□□□ -1.77
CDHR3-201ENST00000317716 P0C880 135 aa3.97□□□□□ -1.77
CDHR3-201ENST00000317716 LRP1Q07954 4544 aaKnown RBP3.96□□□□□ -1.78
CDHR3-201ENST00000317716 PKD1P98161 4303 aa3.95□□□□□ -1.78
CDHR3-201ENST00000317716 TPRXLQ17RH7 258 aa3.94□□□□□ -1.78
CDHR3-201ENST00000317716 KRTAP17-1Q9BYP8 105 aa3.94□□□□□ -1.78
CDHR3-201ENST00000317716 FAT3Q8TDW7 4589 aa3.94□□□□□ -1.78
CDHR3-201ENST00000317716 KRTAP3-1Q9BYR8 98 aa3.93□□□□□ -1.78
CDHR3-201ENST00000317716 HERC2O95714 4834 aa3.91□□□□□ -1.78
CDHR3-201ENST00000317716 A0A0A0MQY5 61 aa3.89□□□□□ -1.79
CDHR3-201ENST00000317716 KRTAP13-4Q3LI77 160 aa3.89□□□□□ -1.79
CDHR3-201ENST00000317716 HSPG2P98160 4391 aa3.88□□□□□ -1.79
CDHR3-201ENST00000317716 BIRC6Q9NR09 4857 aa3.87□□□□□ -1.79
CDHR3-201ENST00000317716 KRTAP12-2P59991 146 aa3.86□□□□□ -1.79
CDHR3-201ENST00000317716 ABCA13Q86UQ4 5058 aa3.86□□□□□ -1.79
CDHR3-201ENST00000317716 KRTAP10-8P60410 259 aa3.85□□□□□ -1.79
CDHR3-201ENST00000317716 RPS29P62273 56 aaKnown RBP3.83□□□□□ -1.8
CDHR3-201ENST00000317716 KRTAP10-4P60372 401 aaPredicted RBP3.82□□□□□ -1.8
CDHR3-201ENST00000317716 PLAC4Q8WY50 150 aa3.81□□□□□ -1.8
CDHR3-201ENST00000317716 KRTAP10-6P60371 365 aaPredicted RBP3.79□□□□□ -1.8
CDHR3-201ENST00000317716 HERC1Q15751 4861 aa3.79□□□□□ -1.8
CDHR3-201ENST00000317716 XP32Q5T750 250 aa3.79□□□□□ -1.8
CDHR3-201ENST00000317716 PCLOQ9Y6V0 5065 aa3.78□□□□□ -1.8
CDHR3-201ENST00000317716 MT1HL1P0DM35 61 aa3.76□□□□□ -1.81
CDHR3-201ENST00000317716 KRTAP12-1P59990 96 aa3.75□□□□□ -1.81
CDHR3-201ENST00000317716 M0R2T5 61 aa3.75□□□□□ -1.81
CDHR3-201ENST00000317716 LRP2P98164 4655 aa3.74□□□□□ -1.81
CDHR3-201ENST00000317716 KRTAP15-1Q3LI76 137 aa3.7□□□□□ -1.82
CDHR3-201ENST00000317716 SEC61BP60468 96 aaKnown RBP3.7□□□□□ -1.82
CDHR3-201ENST00000317716 KRTAP3-2Q9BYR7 98 aa3.69□□□□□ -1.82
CDHR3-201ENST00000317716 LPAP08519 4548 aa3.68□□□□□ -1.82
CDHR3-201ENST00000317716 KRTAP3-3Q9BYR6 98 aa3.68□□□□□ -1.82
CDHR3-201ENST00000317716 RNF213Q63HN8 5207 aa3.67□□□□□ -1.82
CDHR3-201ENST00000317716 UBR4Q5T4S7 5183 aa3.65□□□□□ -1.82
CDHR3-201ENST00000317716 PKHD1L1Q86WI1 4243 aa3.64□□□□□ -1.83
CDHR3-201ENST00000317716 MUC2Q02817 5179 aa3.61□□□□□ -1.83
CDHR3-201ENST00000317716 TNP1P09430 55 aa3.6□□□□□ -1.83
CDHR3-201ENST00000317716 TNXBP22105 4242 aa3.57□□□□□ -1.84
CDHR3-201ENST00000317716 PP632Q6XCG6 107 aa3.53□□□□□ -1.84
CDHR3-201ENST00000317716 LORP23490 312 aaPredicted RBP3.5□□□□□ -1.85
CDHR3-201ENST00000317716 HMCN2Q8NDA2 5059 aa3.47□□□□□ -1.85
CDHR3-201ENST00000317716 FAT4Q6V0I7 4981 aa3.46□□□□□ -1.85
CDHR3-201ENST00000317716 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
CDHR3-201ENST00000317716 FSIP2Q5CZC0 6907 aa3.43□□□□□ -1.86
CDHR3-201ENST00000317716 KRTAP10-10P60014 251 aa3.38□□□□□ -1.87
CDHR3-201ENST00000317716 LCE3AQ5TA76 89 aa3.21□□□□□ -1.9
CDHR3-201ENST00000317716 MT1HP80294 61 aa3.21□□□□□ -1.9
CDHR3-201ENST00000317716 LCE2DQ5TA82 110 aaPredicted RBP3.2□□□□□ -1.9
CDHR3-201ENST00000317716 MUC17Q685J3 4493 aa3.18□□□□□ -1.9
CDHR3-201ENST00000317716 PRO2289Q9P1D8 64 aa3.17□□□□□ -1.9
CDHR3-201ENST00000317716 LCE2CQ5TA81 110 aa3.15□□□□□ -1.91
CDHR3-201ENST00000317716 USH2AO75445 5202 aa3.13□□□□□ -1.91
CDHR3-201ENST00000317716 FLGP20930 4061 aaPredicted RBP3.12□□□□□ -1.91
CDHR3-201ENST00000317716 KRTAP19-2Q3LHN2 52 aa3.11□□□□□ -1.91
CDHR3-201ENST00000317716 INE1O15225 51 aa3.09□□□□□ -1.92
CDHR3-201ENST00000317716 KRTAP12-3P60328 96 aa3.09□□□□□ -1.92
CDHR3-201ENST00000317716 MT1FP04733 61 aa3.08□□□□□ -1.92
CDHR3-201ENST00000317716 MT2AP02795 61 aa3.07□□□□□ -1.92
CDHR3-201ENST00000317716 KRTAP10-12P60413 245 aa3.07□□□□□ -1.92
CDHR3-201ENST00000317716 KRTAP9-8Q9BYQ0 159 aa3□□□□□ -1.93
CDHR3-201ENST00000317716 LCE2AQ5TA79 106 aaPredicted RBP3□□□□□ -1.93
CDHR3-201ENST00000317716 KRTAP23-1A1A580 65 aa2.99□□□□□ -1.93
CDHR3-201ENST00000317716 CRCT1Q9UGL9 99 aa2.99□□□□□ -1.93
CDHR3-201ENST00000317716 KRTAP9-2Q9BYQ4 174 aa2.92□□□□□ -1.94
CDHR3-201ENST00000317716 SPRR5A0A1B0GTR4 108 aa2.91□□□□□ -1.94
CDHR3-201ENST00000317716 KRTAP19-1Q8IUB9 90 aa2.91□□□□□ -1.94
CDHR3-201ENST00000317716 LCE2BO14633 110 aa2.9□□□□□ -1.94
CDHR3-201ENST00000317716 SPRR2GQ9BYE4 73 aa2.89□□□□□ -1.95
CDHR3-201ENST00000317716 KRTAP9-3Q9BYQ3 159 aa2.88□□□□□ -1.95
CDHR3-201ENST00000317716 KRTAP8-1Q8IUC2 63 aa2.87□□□□□ -1.95
CDHR3-201ENST00000317716 KMT2DO14686 5537 aa2.86□□□□□ -1.95
CDHR3-201ENST00000317716 OBSCNQ5VST9 7968 aa2.86□□□□□ -1.95
CDHR3-201ENST00000317716 SSPOA2VEC9 5147 aa2.86□□□□□ -1.95
CDHR3-201ENST00000317716 KRTAP10-7P60409 375 aaPredicted RBP2.86□□□□□ -1.95
CDHR3-201ENST00000317716 KRTAP19-5Q3LI72 72 aa2.84□□□□□ -1.96
CDHR3-201ENST00000317716 KRTAP10-5P60370 271 aa2.81□□□□□ -1.96
CDHR3-201ENST00000317716 SYNE1Q8NF91 8797 aaKnown RBP2.81□□□□□ -1.96
CDHR3-201ENST00000317716 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
CDHR3-201ENST00000317716 MT1BP07438 61 aa2.81□□□□□ -1.96
CDHR3-201ENST00000317716 MT1XP80297 61 aa2.78□□□□□ -1.96
CDHR3-201ENST00000317716 FCGBPQ9Y6R7 5405 aaPredicted RBP2.77□□□□□ -1.97
CDHR3-201ENST00000317716 LCE3CQ5T5A8 94 aa2.77□□□□□ -1.97
CDHR3-201ENST00000317716 MACF1Q9UPN3 7388 aaKnown RBP2.76□□□□□ -1.97
CDHR3-201ENST00000317716 KRTAP4-8A0A0G2JLE6 195 aa2.75□□□□□ -1.97
CDHR3-201ENST00000317716 KRTAP4-8Q9BYQ9 185 aa2.75□□□□□ -1.97
CDHR3-201ENST00000317716 KRTAP4-7Q9BYR0 210 aa2.74□□□□□ -1.97
CDHR3-201ENST00000317716 DSTQ03001 7570 aaKnown RBP2.73□□□□□ -1.97
CDHR3-201ENST00000317716 KRTAP19-8Q3LI54 63 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms