RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 UQCR11O14957 56 aa7.57□□□□□ -1.2
VRK3-201ENST00000316763 SEC61GP60059 68 aa7.56□□□□□ -1.2
VRK3-201ENST00000316763 SPATA8Q6RVD6 105 aa7.54□□□□□ -1.2
VRK3-201ENST00000316763 KTN1-AS1Q86SY8 53 aa7.54□□□□□ -1.2
VRK3-201ENST00000316763 MIR22HGQ0VDD5 57 aa7.52□□□□□ -1.2
VRK3-201ENST00000316763 TPRXLQ17RH7 258 aa7.48□□□□□ -1.21
VRK3-201ENST00000316763 KRTAP3-1Q9BYR8 98 aa7.47□□□□□ -1.21
VRK3-201ENST00000316763 XP32Q5T750 250 aa7.46□□□□□ -1.22
VRK3-201ENST00000316763 COX6B2Q6YFQ2 88 aa7.45□□□□□ -1.22
VRK3-201ENST00000316763 LPAP08519 4548 aa7.45□□□□□ -1.22
VRK3-201ENST00000316763 HMCN2Q8NDA2 5059 aa7.43□□□□□ -1.22
VRK3-201ENST00000316763 RPL37P61927 97 aaKnown RBP7.41□□□□□ -1.22
VRK3-201ENST00000316763 LRP2P98164 4655 aa7.35□□□□□ -1.23
VRK3-201ENST00000316763 A0A1B0GU33 70 aa7.33□□□□□ -1.24
VRK3-201ENST00000316763 H1FX-AS1Q4G0G2 97 aa7.29□□□□□ -1.24
VRK3-201ENST00000316763 RBM12B-AS1Q9P1G2 102 aa7.27□□□□□ -1.25
VRK3-201ENST00000316763 H0YAA0 97 aa7.26□□□□□ -1.25
VRK3-201ENST00000316763 SEC61BP60468 96 aaKnown RBP7.21□□□□□ -1.26
VRK3-201ENST00000316763 S4R3F8 94 aa7.21□□□□□ -1.26
VRK3-201ENST00000316763 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
VRK3-201ENST00000316763 PRAC1Q96KF2 57 aa7.17□□□□□ -1.26
VRK3-201ENST00000316763 MUC17Q685J3 4493 aa7.15□□□□□ -1.26
VRK3-201ENST00000316763 ADM2Q7Z4H4 148 aa7.15□□□□□ -1.27
VRK3-201ENST00000316763 UBR4Q5T4S7 5183 aa7.14□□□□□ -1.27
VRK3-201ENST00000316763 K7ERS5 55 aa7.13□□□□□ -1.27
VRK3-201ENST00000316763 KRTAP4-1Q9BYQ7 146 aa7.11□□□□□ -1.27
VRK3-201ENST00000316763 LCE2DQ5TA82 110 aaPredicted RBP7.1□□□□□ -1.27
VRK3-201ENST00000316763 KRTAP10-6P60371 365 aaPredicted RBP7.09□□□□□ -1.27
VRK3-201ENST00000316763 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
VRK3-201ENST00000316763 MUC2Q02817 5179 aa7.02□□□□□ -1.29
VRK3-201ENST00000316763 CSAG1Q6PB30 78 aa7.02□□□□□ -1.29
VRK3-201ENST00000316763 RNF213Q63HN8 5207 aa7.02□□□□□ -1.29
VRK3-201ENST00000316763 KRTAP13-4Q3LI77 160 aa6.96□□□□□ -1.3
VRK3-201ENST00000316763 P0C880 135 aa6.95□□□□□ -1.3
VRK3-201ENST00000316763 LINC01554Q52M75 96 aa6.95□□□□□ -1.3
VRK3-201ENST00000316763 A0A0D9SG42 100 aa6.93□□□□□ -1.3
VRK3-201ENST00000316763 KRTAP19-2Q3LHN2 52 aa6.91□□□□□ -1.3
VRK3-201ENST00000316763 ROMO1P60602 79 aa6.88□□□□□ -1.31
VRK3-201ENST00000316763 KRTAP25-1Q3LHN0 102 aa6.88□□□□□ -1.31
VRK3-201ENST00000316763 M0QZ58 72 aa6.84□□□□□ -1.31
VRK3-201ENST00000316763 LCE2CQ5TA81 110 aa6.83□□□□□ -1.32
VRK3-201ENST00000316763 FAT4Q6V0I7 4981 aa6.78□□□□□ -1.32
VRK3-201ENST00000316763 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
VRK3-201ENST00000316763 SPINT4Q6UDR6 99 aa6.74□□□□□ -1.33
VRK3-201ENST00000316763 KRTAP12-1P59990 96 aa6.74□□□□□ -1.33
VRK3-201ENST00000316763 CRIPTQ9P021 101 aa6.73□□□□□ -1.33
VRK3-201ENST00000316763 MT1HP80294 61 aa6.7□□□□□ -1.34
VRK3-201ENST00000316763 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
VRK3-201ENST00000316763 LCE2AQ5TA79 106 aaPredicted RBP6.68□□□□□ -1.34
VRK3-201ENST00000316763 R4GN34 69 aa6.68□□□□□ -1.34
VRK3-201ENST00000316763 M0R2T5 61 aa6.61□□□□□ -1.35
VRK3-201ENST00000316763 C10orf95Q9H7T3 257 aa6.53□□□□□ -1.36
VRK3-201ENST00000316763 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
VRK3-201ENST00000316763 KRTAP9-8Q9BYQ0 159 aa6.42□□□□□ -1.38
VRK3-201ENST00000316763 MT2AP02795 61 aa6.37□□□□□ -1.39
VRK3-201ENST00000316763 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
VRK3-201ENST00000316763 MT1FP04733 61 aa6.32□□□□□ -1.4
VRK3-201ENST00000316763 KRTAP10-10P60014 251 aa6.3□□□□□ -1.4
VRK3-201ENST00000316763 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.41
VRK3-201ENST00000316763 SPRR2GQ9BYE4 73 aa6.2□□□□□ -1.42
VRK3-201ENST00000316763 KRTAP9-3Q9BYQ3 159 aa6.2□□□□□ -1.42
VRK3-201ENST00000316763 PP632Q6XCG6 107 aa6.19□□□□□ -1.42
VRK3-201ENST00000316763 KRTAP19-1Q8IUB9 90 aa6.18□□□□□ -1.42
VRK3-201ENST00000316763 KRTAP9-2Q9BYQ4 174 aa6.13□□□□□ -1.43
VRK3-201ENST00000316763 H3BS24 57 aa6.11□□□□□ -1.43
VRK3-201ENST00000316763 TNP1P09430 55 aa6.09□□□□□ -1.43
VRK3-201ENST00000316763 PLAC4Q8WY50 150 aa6.09□□□□□ -1.43
VRK3-201ENST00000316763 LCE2BO14633 110 aa6.09□□□□□ -1.44
VRK3-201ENST00000316763 KRTAP19-8Q3LI54 63 aa6.04□□□□□ -1.44
VRK3-201ENST00000316763 KRTAP23-1A1A580 65 aa6.03□□□□□ -1.44
VRK3-201ENST00000316763 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
VRK3-201ENST00000316763 MT1BP07438 61 aa5.95□□□□□ -1.46
VRK3-201ENST00000316763 USH2AO75445 5202 aa5.93□□□□□ -1.46
VRK3-201ENST00000316763 FSIP2Q5CZC0 6907 aa5.92□□□□□ -1.46
VRK3-201ENST00000316763 CRCT1Q9UGL9 99 aa5.86□□□□□ -1.47
VRK3-201ENST00000316763 A0A0A0MQY5 61 aa5.82□□□□□ -1.48
VRK3-201ENST00000316763 LUZP6Q538Z0 58 aa5.8□□□□□ -1.48
VRK3-201ENST00000316763 SSPOA2VEC9 5147 aa5.8□□□□□ -1.48
VRK3-201ENST00000316763 KRTAP19-6Q3LI70 58 aa5.78□□□□□ -1.48
VRK3-201ENST00000316763 KRTAP9-6A0A140TA67 174 aa5.77□□□□□ -1.49
VRK3-201ENST00000316763 MT1XP80297 61 aa5.76□□□□□ -1.49
VRK3-201ENST00000316763 KRTAP10-5P60370 271 aa5.75□□□□□ -1.49
VRK3-201ENST00000316763 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
VRK3-201ENST00000316763 PRO2289Q9P1D8 64 aa5.67□□□□□ -1.5
VRK3-201ENST00000316763 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
VRK3-201ENST00000316763 FCGBPQ9Y6R7 5405 aaPredicted RBP5.62□□□□□ -1.51
VRK3-201ENST00000316763 KRTAP8-1Q8IUC2 63 aa5.61□□□□□ -1.51
VRK3-201ENST00000316763 KRTAP10-12P60413 245 aa5.57□□□□□ -1.52
VRK3-201ENST00000316763 LOC100996750A0A140TA64 210 aa5.53□□□□□ -1.52
VRK3-201ENST00000316763 KRTAP4-6Q9BYQ5 205 aa5.53□□□□□ -1.52
VRK3-201ENST00000316763 KRTAP10-7P60409 375 aaPredicted RBP5.51□□□□□ -1.53
VRK3-201ENST00000316763 KRTAP12-3P60328 96 aa5.48□□□□□ -1.53
VRK3-201ENST00000316763 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.43□□□□□ -1.54
VRK3-201ENST00000316763 MACF1Q9UPN3 7388 aaKnown RBP5.4□□□□□ -1.55
VRK3-201ENST00000316763 KRTAP4-8A0A0G2JLE6 195 aa5.31□□□□□ -1.56
VRK3-201ENST00000316763 KRTAP4-8Q9BYQ9 185 aa5.31□□□□□ -1.56
VRK3-201ENST00000316763 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
VRK3-201ENST00000316763 KMT2DO14686 5537 aa5.26□□□□□ -1.57
VRK3-201ENST00000316763 SYNE2Q8WXH0 6885 aaKnown RBP5.26□□□□□ -1.57
VRK3-201ENST00000316763 KRTAP9-7A8MTY7 169 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms