RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 SPTSSBQ8NFR3 76 aa9.43□□□□□ -0.9
CCDC43-201ENST00000315286 LCA10Q71F78 164 aa9.41□□□□□ -0.9
CCDC43-201ENST00000315286 CDC42SE1Q9NRR8 79 aa9.35□□□□□ -0.91
CCDC43-201ENST00000315286 SEC61GP60059 68 aa9.3□□□□□ -0.92
CCDC43-201ENST00000315286 KRTAP3-3Q9BYR6 98 aa9.27□□□□□ -0.93
CCDC43-201ENST00000315286 UQCR11O14957 56 aa9.24□□□□□ -0.93
CCDC43-201ENST00000315286 S4R3F8 94 aa9.23□□□□□ -0.93
CCDC43-201ENST00000315286 H1FX-AS1Q4G0G2 97 aa9.22□□□□□ -0.93
CCDC43-201ENST00000315286 SEC61BP60468 96 aaKnown RBP9.21□□□□□ -0.93
CCDC43-201ENST00000315286 SPATA8Q6RVD6 105 aa9.19□□□□□ -0.94
CCDC43-201ENST00000315286 RBM12B-AS1Q9P1G2 102 aa9.19□□□□□ -0.94
CCDC43-201ENST00000315286 MIR22HGQ0VDD5 57 aa9.18□□□□□ -0.94
CCDC43-201ENST00000315286 PCLOQ9Y6V0 5065 aa9.16□□□□□ -0.94
CCDC43-201ENST00000315286 MUC17Q685J3 4493 aa9.15□□□□□ -0.94
CCDC43-201ENST00000315286 PMAIP1Q13794 54 aa9.12□□□□□ -0.95
CCDC43-201ENST00000315286 KRTAP4-1Q9BYQ7 146 aa9.11□□□□□ -0.95
CCDC43-201ENST00000315286 A0A1B0GU33 70 aa9.1□□□□□ -0.95
CCDC43-201ENST00000315286 HERC1Q15751 4861 aa9.08□□□□□ -0.96
CCDC43-201ENST00000315286 H0YAA0 97 aa9.04□□□□□ -0.96
CCDC43-201ENST00000315286 KRTAP10-6P60371 365 aaPredicted RBP9.03□□□□□ -0.96
CCDC43-201ENST00000315286 A6NN06 94 aa9.02□□□□□ -0.97
CCDC43-201ENST00000315286 KRTAP3-2Q9BYR7 98 aa9.02□□□□□ -0.97
CCDC43-201ENST00000315286 CSAG1Q6PB30 78 aa8.98□□□□□ -0.97
CCDC43-201ENST00000315286 HMCN2Q8NDA2 5059 aa8.98□□□□□ -0.97
CCDC43-201ENST00000315286 P0C880 135 aa8.92□□□□□ -0.98
CCDC43-201ENST00000315286 ADM2Q7Z4H4 148 aa8.9□□□□□ -0.99
CCDC43-201ENST00000315286 KRTAP19-2Q3LHN2 52 aa8.89□□□□□ -0.99
CCDC43-201ENST00000315286 MUC2Q02817 5179 aa8.89□□□□□ -0.99
CCDC43-201ENST00000315286 KRTAP13-4Q3LI77 160 aa8.86□□□□□ -0.99
CCDC43-201ENST00000315286 KTN1-AS1Q86SY8 53 aa8.81□□□□□ -1
CCDC43-201ENST00000315286 A0A0D9SG42 100 aa8.73□□□□□ -1.01
CCDC43-201ENST00000315286 FLGP20930 4061 aaPredicted RBP8.71□□□□□ -1.02
CCDC43-201ENST00000315286 K7ERS5 55 aa8.65□□□□□ -1.03
CCDC43-201ENST00000315286 M0QZ58 72 aa8.63□□□□□ -1.03
CCDC43-201ENST00000315286 PRAC1Q96KF2 57 aa8.57□□□□□ -1.04
CCDC43-201ENST00000315286 UBR4Q5T4S7 5183 aa8.56□□□□□ -1.04
CCDC43-201ENST00000315286 LORP23490 312 aaPredicted RBP8.55□□□□□ -1.04
CCDC43-201ENST00000315286 LCE2CQ5TA81 110 aa8.55□□□□□ -1.04
CCDC43-201ENST00000315286 RNF213Q63HN8 5207 aa8.55□□□□□ -1.04
CCDC43-201ENST00000315286 KRTAP12-2P59991 146 aa8.53□□□□□ -1.04
CCDC43-201ENST00000315286 R4GN34 69 aa8.53□□□□□ -1.04
CCDC43-201ENST00000315286 FAT4Q6V0I7 4981 aa8.51□□□□□ -1.05
CCDC43-201ENST00000315286 KRTAP12-1P59990 96 aa8.5□□□□□ -1.05
CCDC43-201ENST00000315286 SPINT4Q6UDR6 99 aa8.47□□□□□ -1.05
CCDC43-201ENST00000315286 LINC01554Q52M75 96 aa8.45□□□□□ -1.06
CCDC43-201ENST00000315286 ROMO1P60602 79 aa8.39□□□□□ -1.07
CCDC43-201ENST00000315286 MT1HP80294 61 aa8.34□□□□□ -1.07
CCDC43-201ENST00000315286 M0R2T5 61 aa8.3□□□□□ -1.08
CCDC43-201ENST00000315286 CRIPTQ9P021 101 aa8.26□□□□□ -1.09
CCDC43-201ENST00000315286 KRTAP25-1Q3LHN0 102 aa8.22□□□□□ -1.09
CCDC43-201ENST00000315286 MT2AP02795 61 aa8.09□□□□□ -1.11
CCDC43-201ENST00000315286 KRTAP9-8Q9BYQ0 159 aa8.09□□□□□ -1.11
CCDC43-201ENST00000315286 MT1FP04733 61 aa8.07□□□□□ -1.12
CCDC43-201ENST00000315286 SPRR2GQ9BYE4 73 aa8.07□□□□□ -1.12
CCDC43-201ENST00000315286 C10orf95Q9H7T3 257 aa8.06□□□□□ -1.12
CCDC43-201ENST00000315286 KRTAP19-1Q8IUB9 90 aa8.06□□□□□ -1.12
CCDC43-201ENST00000315286 KRTAP10-10P60014 251 aa8.04□□□□□ -1.12
CCDC43-201ENST00000315286 CAMK2N1Q7Z7J9 78 aa8.04□□□□□ -1.12
CCDC43-201ENST00000315286 PLAC4Q8WY50 150 aa7.87□□□□□ -1.15
CCDC43-201ENST00000315286 KRTAP19-8Q3LI54 63 aa7.79□□□□□ -1.16
CCDC43-201ENST00000315286 KRTAP9-3Q9BYQ3 159 aa7.77□□□□□ -1.17
CCDC43-201ENST00000315286 LCE2AQ5TA79 106 aaPredicted RBP7.75□□□□□ -1.17
CCDC43-201ENST00000315286 MT1BP07438 61 aa7.71□□□□□ -1.18
CCDC43-201ENST00000315286 TNP1P09430 55 aa7.68□□□□□ -1.18
CCDC43-201ENST00000315286 PP632Q6XCG6 107 aa7.59□□□□□ -1.19
CCDC43-201ENST00000315286 LCE2BO14633 110 aa7.53□□□□□ -1.2
CCDC43-201ENST00000315286 KRTAP10-5P60370 271 aa7.53□□□□□ -1.2
CCDC43-201ENST00000315286 MT1XP80297 61 aa7.53□□□□□ -1.2
CCDC43-201ENST00000315286 KRTAP23-1A1A580 65 aa7.48□□□□□ -1.21
CCDC43-201ENST00000315286 H3BS24 57 aa7.39□□□□□ -1.23
CCDC43-201ENST00000315286 KRTAP15-1Q3LI76 137 aa7.38□□□□□ -1.23
CCDC43-201ENST00000315286 USH2AO75445 5202 aa7.36□□□□□ -1.23
CCDC43-201ENST00000315286 LCE3AQ5TA76 89 aa7.35□□□□□ -1.23
CCDC43-201ENST00000315286 PRO2289Q9P1D8 64 aa7.33□□□□□ -1.24
CCDC43-201ENST00000315286 KRTAP10-7P60409 375 aaPredicted RBP7.28□□□□□ -1.24
CCDC43-201ENST00000315286 KRTAP10-12P60413 245 aa7.23□□□□□ -1.25
CCDC43-201ENST00000315286 KRTAP8-1Q8IUC2 63 aa7.17□□□□□ -1.26
CCDC43-201ENST00000315286 SSPOA2VEC9 5147 aa7.04□□□□□ -1.28
CCDC43-201ENST00000315286 KRTAP12-3P60328 96 aa7.02□□□□□ -1.29
CCDC43-201ENST00000315286 KMT2DO14686 5537 aa7□□□□□ -1.29
CCDC43-201ENST00000315286 FSIP2Q5CZC0 6907 aa6.99□□□□□ -1.29
CCDC43-201ENST00000315286 NDUFAF8A1L188 74 aa6.99□□□□□ -1.29
CCDC43-201ENST00000315286 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
CCDC43-201ENST00000315286 KRTAP4-8Q9BYQ9 185 aa6.94□□□□□ -1.3
CCDC43-201ENST00000315286 KRTAP19-6Q3LI70 58 aa6.92□□□□□ -1.3
CCDC43-201ENST00000315286 SPRR5A0A1B0GTR4 108 aa6.91□□□□□ -1.3
CCDC43-201ENST00000315286 KRTAP19-5Q3LI72 72 aa6.89□□□□□ -1.31
CCDC43-201ENST00000315286 LCE2DQ5TA82 110 aaPredicted RBP6.86□□□□□ -1.31
CCDC43-201ENST00000315286 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
CCDC43-201ENST00000315286 KRTAP19-7Q3SYF9 63 aa6.72□□□□□ -1.33
CCDC43-201ENST00000315286 FCGBPQ9Y6R7 5405 aaPredicted RBP6.66□□□□□ -1.34
CCDC43-201ENST00000315286 LCE3CQ5T5A8 94 aa6.59□□□□□ -1.35
CCDC43-201ENST00000315286 MT1EP04732 61 aa6.56□□□□□ -1.36
CCDC43-201ENST00000315286 MT1LQ93083 61 aa6.48□□□□□ -1.37
CCDC43-201ENST00000315286 KRTAP9-2Q9BYQ4 174 aa6.47□□□□□ -1.37
CCDC43-201ENST00000315286 KRTAP4-7Q9BYR0 210 aa6.42□□□□□ -1.38
CCDC43-201ENST00000315286 KRTAP19-4Q3LI73 84 aa6.39□□□□□ -1.39
CCDC43-201ENST00000315286 MACF1Q9UPN3 7388 aaKnown RBP6.38□□□□□ -1.39
CCDC43-201ENST00000315286 MUC12Q9UKN1 5478 aa6.34□□□□□ -1.39
CCDC43-201ENST00000315286 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms