RNA–Protein interactions for RNA: ENST00000305264.7

HDAC3-201, Transcript of histone deacetylase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC3, Length 1,959 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-201ENST00000305264 LORP23490 312 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-201ENST00000305264 KRTAP3-3Q9BYR6 98 aa13.03□□□□□ -0.32
HDAC3-201ENST00000305264 ACYP2P14621 99 aa12.98□□□□□ -0.33
HDAC3-201ENST00000305264 CSAG1Q6PB30 78 aa12.92□□□□□ -0.34
HDAC3-201ENST00000305264 KRTAP9-8Q9BYQ0 159 aa12.9□□□□□ -0.34
HDAC3-201ENST00000305264 MT2AP02795 61 aa12.81□□□□□ -0.36
HDAC3-201ENST00000305264 CHKB-CPT1BH3BT56 60 aa12.77□□□□□ -0.37
HDAC3-201ENST00000305264 PCP4P48539 62 aa12.76□□□□□ -0.37
HDAC3-201ENST00000305264 COA5Q86WW8 74 aa12.74□□□□□ -0.37
HDAC3-201ENST00000305264 MT1FP04733 61 aa12.74□□□□□ -0.37
HDAC3-201ENST00000305264 TMEM258P61165 79 aa12.7□□□□□ -0.38
HDAC3-201ENST00000305264 ATP5EP56381 51 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-201ENST00000305264 KRTAP10-10P60014 251 aa12.66□□□□□ -0.38
HDAC3-201ENST00000305264 SPTSSBQ8NFR3 76 aa12.62□□□□□ -0.39
HDAC3-201ENST00000305264 H0YAA0 97 aa12.56□□□□□ -0.4
HDAC3-201ENST00000305264 ADM2Q7Z4H4 148 aa12.5□□□□□ -0.41
HDAC3-201ENST00000305264 KRTAP9-3Q9BYQ3 159 aa12.47□□□□□ -0.41
HDAC3-201ENST00000305264 LCE2DQ5TA82 110 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-201ENST00000305264 KRTAP3-2Q9BYR7 98 aa12.39□□□□□ -0.43
HDAC3-201ENST00000305264 P0C880 135 aa12.37□□□□□ -0.43
HDAC3-201ENST00000305264 KRTAP9-2Q9BYQ4 174 aa12.34□□□□□ -0.43
HDAC3-201ENST00000305264 SERP1Q9Y6X1 66 aa12.3□□□□□ -0.44
HDAC3-201ENST00000305264 KRTAP19-1Q8IUB9 90 aa12.25□□□□□ -0.45
HDAC3-201ENST00000305264 LCE2BO14633 110 aa12.25□□□□□ -0.45
HDAC3-201ENST00000305264 CRIPTQ9P021 101 aa12.24□□□□□ -0.45
HDAC3-201ENST00000305264 SPRR2GQ9BYE4 73 aa12.19□□□□□ -0.46
HDAC3-201ENST00000305264 USH2AO75445 5202 aa12.16□□□□□ -0.46
HDAC3-201ENST00000305264 SEC61GP60059 68 aa12.12□□□□□ -0.47
HDAC3-201ENST00000305264 R4GN34 69 aa12.1□□□□□ -0.47
HDAC3-201ENST00000305264 M0QZ58 72 aa12.07□□□□□ -0.48
HDAC3-201ENST00000305264 FSIP2Q5CZC0 6907 aa12.06□□□□□ -0.48
HDAC3-201ENST00000305264 A0A1B0GU69 56 aa12.04□□□□□ -0.48
HDAC3-201ENST00000305264 LINC01558Q9Y6Z2 57 aa12.01□□□□□ -0.49
HDAC3-201ENST00000305264 KRTAP19-8Q3LI54 63 aa11.98□□□□□ -0.49
HDAC3-201ENST00000305264 RPS28P62857 69 aaKnown RBP11.93□□□□□ -0.5
HDAC3-201ENST00000305264 KRTAP13-4Q3LI77 160 aa11.92□□□□□ -0.5
HDAC3-201ENST00000305264 MT1BP07438 61 aa11.9□□□□□ -0.5
HDAC3-201ENST00000305264 Q5VV11 94 aa11.9□□□□□ -0.5
HDAC3-201ENST00000305264 SSPOA2VEC9 5147 aa11.89□□□□□ -0.51
HDAC3-201ENST00000305264 PRR15LQ9BU68 103 aa11.88□□□□□ -0.51
HDAC3-201ENST00000305264 A0A1B0GU33 70 aa11.88□□□□□ -0.51
HDAC3-201ENST00000305264 LINC01554Q52M75 96 aa11.87□□□□□ -0.51
HDAC3-201ENST00000305264 SMIM26A0A096LP01 95 aa11.86□□□□□ -0.51
HDAC3-201ENST00000305264 Q1T7F1 81 aa11.81□□□□□ -0.52
HDAC3-201ENST00000305264 CRCT1Q9UGL9 99 aa11.79□□□□□ -0.52
HDAC3-201ENST00000305264 V9GYY9 64 aa11.78□□□□□ -0.52
HDAC3-201ENST00000305264 SPATA8Q6RVD6 105 aa11.78□□□□□ -0.52
HDAC3-201ENST00000305264 PSPHP1O15172 72 aa11.68□□□□□ -0.54
HDAC3-201ENST00000305264 KRTAP19-6Q3LI70 58 aa11.63□□□□□ -0.55
HDAC3-201ENST00000305264 A0A0D9SG42 100 aa11.62□□□□□ -0.55
HDAC3-201ENST00000305264 KRTAP9-6A0A140TA67 174 aa11.62□□□□□ -0.55
HDAC3-201ENST00000305264 PLAC4Q8WY50 150 aa11.61□□□□□ -0.55
HDAC3-201ENST00000305264 A6NN06 94 aa11.58□□□□□ -0.56
HDAC3-201ENST00000305264 UQCR11O14957 56 aa11.54□□□□□ -0.56
HDAC3-201ENST00000305264 A8MU10 97 aa11.52□□□□□ -0.56
HDAC3-201ENST00000305264 FCGBPQ9Y6R7 5405 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-201ENST00000305264 KRTAP10-5P60370 271 aa11.42□□□□□ -0.58
HDAC3-201ENST00000305264 KRTAP12-1P59990 96 aa11.39□□□□□ -0.59
HDAC3-201ENST00000305264 SPINT4Q6UDR6 99 aa11.37□□□□□ -0.59
HDAC3-201ENST00000305264 MT1XP80297 61 aa11.37□□□□□ -0.59
HDAC3-201ENST00000305264 MIR22HGQ0VDD5 57 aa11.37□□□□□ -0.59
HDAC3-201ENST00000305264 KRTAP12-2P59991 146 aa11.35□□□□□ -0.59
HDAC3-201ENST00000305264 A6NED7 52 aa11.3□□□□□ -0.6
HDAC3-201ENST00000305264 PRO2289Q9P1D8 64 aa11.27□□□□□ -0.61
HDAC3-201ENST00000305264 CAMK2N1Q7Z7J9 78 aa11.25□□□□□ -0.61
HDAC3-201ENST00000305264 CDC42SE1Q9NRR8 79 aa10.99□□□□□ -0.65
HDAC3-201ENST00000305264 MACF1Q9UPN3 7388 aaKnown RBP10.98□□□□□ -0.65
HDAC3-201ENST00000305264 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.95□□□□□ -0.66
HDAC3-201ENST00000305264 K7ERS5 55 aa10.93□□□□□ -0.66
HDAC3-201ENST00000305264 KRTAP10-7P60409 375 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-201ENST00000305264 C10orf95Q9H7T3 257 aa10.83□□□□□ -0.68
HDAC3-201ENST00000305264 KMT2DO14686 5537 aa10.79□□□□□ -0.68
HDAC3-201ENST00000305264 KRTAP10-12P60413 245 aa10.77□□□□□ -0.68
HDAC3-201ENST00000305264 SYNE2Q8WXH0 6885 aaKnown RBP10.73□□□□□ -0.69
HDAC3-201ENST00000305264 BRK1Q8WUW1 75 aa10.7□□□□□ -0.7
HDAC3-201ENST00000305264 KRTAP4-8A0A0G2JLE6 195 aa10.63□□□□□ -0.71
HDAC3-201ENST00000305264 KRTAP4-8Q9BYQ9 185 aa10.63□□□□□ -0.71
HDAC3-201ENST00000305264 TNP1P09430 55 aa10.57□□□□□ -0.72
HDAC3-201ENST00000305264 KRTAP9-7A8MTY7 169 aa10.56□□□□□ -0.72
HDAC3-201ENST00000305264 KRTAP8-1Q8IUC2 63 aa10.5□□□□□ -0.73
HDAC3-201ENST00000305264 KRTAP6-3Q3LI67 103 aa10.46□□□□□ -0.73
HDAC3-201ENST00000305264 ROMO1P60602 79 aa10.41□□□□□ -0.74
HDAC3-201ENST00000305264 KRTAP25-1Q3LHN0 102 aa10.39□□□□□ -0.75
HDAC3-201ENST00000305264 KRTAP5-9P26371 169 aa10.37□□□□□ -0.75
HDAC3-201ENST00000305264 LCE3AQ5TA76 89 aa10.31□□□□□ -0.76
HDAC3-201ENST00000305264 SPRR2FQ96RM1 72 aa10.28□□□□□ -0.76
HDAC3-201ENST00000305264 MUC12Q9UKN1 5478 aa10.24□□□□□ -0.77
HDAC3-201ENST00000305264 KRTAP19-7Q3SYF9 63 aa10.15□□□□□ -0.78
HDAC3-201ENST00000305264 KRTAP19-5Q3LI72 72 aa10.12□□□□□ -0.79
HDAC3-201ENST00000305264 MDN1Q9NU22 5596 aa10.11□□□□□ -0.79
HDAC3-201ENST00000305264 PRO0628Q9UI54 55 aa10.08□□□□□ -0.8
HDAC3-201ENST00000305264 PMAIP1Q13794 54 aa10.06□□□□□ -0.8
HDAC3-201ENST00000305264 MT1EP04732 61 aa10.01□□□□□ -0.81
HDAC3-201ENST00000305264 KRTAP23-1A1A580 65 aa10□□□□□ -0.81
HDAC3-201ENST00000305264 SPRR2EP22531 72 aa9.92□□□□□ -0.82
HDAC3-201ENST00000305264 SPRR2BP35325 72 aa9.92□□□□□ -0.82
HDAC3-201ENST00000305264 SPRR2AP35326 72 aa9.92□□□□□ -0.82
HDAC3-201ENST00000305264 NEBP20929 6669 aa9.92□□□□□ -0.82
HDAC3-201ENST00000305264 LCE1AQ5T7P2 110 aa9.91□□□□□ -0.82
HDAC3-201ENST00000305264 KRTAP12-3P60328 96 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms