RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 FAM236AA0A1B0GUQ0 79 aa3.4□□□□□ -1.87
DEPDC4-201ENST00000299185 FAM236BA0A1B0GV22 79 aa3.4□□□□□ -1.87
DEPDC4-201ENST00000299185 SEC61BP60468 96 aaKnown RBP3.4□□□□□ -1.87
DEPDC4-201ENST00000299185 KRTAP10-5P60370 271 aa3.39□□□□□ -1.87
DEPDC4-201ENST00000299185 Q5W150 140 aa3.39□□□□□ -1.87
DEPDC4-201ENST00000299185 ZCCHC13Q8WW36 166 aaKnown RBP3.39□□□□□ -1.87
DEPDC4-201ENST00000299185 ATOX1O00244 68 aa3.38□□□□□ -1.87
DEPDC4-201ENST00000299185 SMIM20Q8N5G0 67 aa3.38□□□□□ -1.87
DEPDC4-201ENST00000299185 ATP11AUNQ6ZP68 121 aa3.37□□□□□ -1.87
DEPDC4-201ENST00000299185 OCR1Q9BZK8 76 aa3.36□□□□□ -1.87
DEPDC4-201ENST00000299185 TRAV7A0A075B6U4 112 aa3.35□□□□□ -1.87
DEPDC4-201ENST00000299185 SERP2Q8N6R1 65 aa3.35□□□□□ -1.87
DEPDC4-201ENST00000299185 TP53AIP1Q9HCN2 124 aa3.35□□□□□ -1.87
DEPDC4-201ENST00000299185 KRTAP9-6A8MVA2 160 aa3.34□□□□□ -1.87
DEPDC4-201ENST00000299185 KRTAP19-2Q3LHN2 52 aa3.34□□□□□ -1.87
DEPDC4-201ENST00000299185 ANAPC13Q9BS18 74 aa3.34□□□□□ -1.87
DEPDC4-201ENST00000299185 UQCRQO14949 82 aa3.33□□□□□ -1.88
DEPDC4-201ENST00000299185 HRES1P13985 223 aa3.33□□□□□ -1.88
DEPDC4-201ENST00000299185 C5orf47Q569G3 176 aa3.33□□□□□ -1.88
DEPDC4-201ENST00000299185 COX7CP15954 63 aa3.32□□□□□ -1.88
DEPDC4-201ENST00000299185 SPINK7P58062 85 aa3.31□□□□□ -1.88
DEPDC4-201ENST00000299185 H0Y9P7 68 aa3.3□□□□□ -1.88
DEPDC4-201ENST00000299185 TRAV22A0A0B4J277 110 aa3.29□□□□□ -1.88
DEPDC4-201ENST00000299185 H3BPC8 53 aa3.29□□□□□ -1.88
DEPDC4-201ENST00000299185 MP68P56378 58 aa3.29□□□□□ -1.88
DEPDC4-201ENST00000299185 C7orf65Q6ZTY9 151 aa3.28□□□□□ -1.88
DEPDC4-201ENST00000299185 CCDC179H3BU77 68 aa3.27□□□□□ -1.89
DEPDC4-201ENST00000299185 COX6B2Q6YFQ2 88 aa3.27□□□□□ -1.89
DEPDC4-201ENST00000299185 C20orf197Q8N268 126 aa3.27□□□□□ -1.89
DEPDC4-201ENST00000299185 FAM236DA0A1B0GTK5 79 aa3.26□□□□□ -1.89
DEPDC4-201ENST00000299185 FAM236CP0DP71 79 aa3.26□□□□□ -1.89
DEPDC4-201ENST00000299185 KLKP1Q107X0 134 aa3.26□□□□□ -1.89
DEPDC4-201ENST00000299185 C1orf64Q8NEQ6 169 aa3.26□□□□□ -1.89
DEPDC4-201ENST00000299185 LINC00208Q96KT6 92 aa3.26□□□□□ -1.89
DEPDC4-201ENST00000299185 C4orf26Q17RF5 130 aa3.25□□□□□ -1.89
DEPDC4-201ENST00000299185 LOC101927531A0A1B0GV80 90 aa3.24□□□□□ -1.89
DEPDC4-201ENST00000299185 MT1HP80294 61 aa3.24□□□□□ -1.89
DEPDC4-201ENST00000299185 CYP4F30PQ9H0H9 118 aa3.24□□□□□ -1.89
DEPDC4-201ENST00000299185 SNURFQ9Y675 71 aa3.24□□□□□ -1.89
DEPDC4-201ENST00000299185 NDUFC1O43677 76 aa3.23□□□□□ -1.89
DEPDC4-201ENST00000299185 CYSTM1Q9H1C7 97 aa3.21□□□□□ -1.9
DEPDC4-201ENST00000299185 H7BZZ5 65 aa3.2□□□□□ -1.9
DEPDC4-201ENST00000299185 RBM12B-AS1Q9P1G2 102 aa3.2□□□□□ -1.9
DEPDC4-201ENST00000299185 FLGP20930 4061 aaPredicted RBP3.19□□□□□ -1.9
DEPDC4-201ENST00000299185 SPANXA2-OT1Q8N9U9 137 aa3.17□□□□□ -1.9
DEPDC4-201ENST00000299185 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
DEPDC4-201ENST00000299185 M0R2T5 61 aa3.16□□□□□ -1.9
DEPDC4-201ENST00000299185 TMEM258P61165 79 aa3.16□□□□□ -1.9
DEPDC4-201ENST00000299185 H1FX-AS1Q4G0G2 97 aa3.15□□□□□ -1.91
DEPDC4-201ENST00000299185 SYNE2Q8WXH0 6885 aaKnown RBP3.14□□□□□ -1.91
DEPDC4-201ENST00000299185 ATP5EP56381 51 aaPredicted RBP3.14□□□□□ -1.91
DEPDC4-201ENST00000299185 KRTAP4-3Q9BYR4 195 aa3.13□□□□□ -1.91
DEPDC4-201ENST00000299185 S4R3F8 94 aa3.13□□□□□ -1.91
DEPDC4-201ENST00000299185 KRTAP10-12P60413 245 aa3.12□□□□□ -1.91
DEPDC4-201ENST00000299185 LCA10Q71F78 164 aa3.12□□□□□ -1.91
DEPDC4-201ENST00000299185 SSPOA2VEC9 5147 aa3.11□□□□□ -1.91
DEPDC4-201ENST00000299185 A8MUN3 132 aa3.11□□□□□ -1.91
DEPDC4-201ENST00000299185 DMAC1Q96GE9 116 aa3.11□□□□□ -1.91
DEPDC4-201ENST00000299185 ACYP2P14621 99 aa3.1□□□□□ -1.91
DEPDC4-201ENST00000299185 MT2AP02795 61 aa3.09□□□□□ -1.91
DEPDC4-201ENST00000299185 MT1FP04733 61 aa3.09□□□□□ -1.91
DEPDC4-201ENST00000299185 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.91
DEPDC4-201ENST00000299185 RPS28P62857 69 aaKnown RBP3.07□□□□□ -1.92
DEPDC4-201ENST00000299185 SERP1Q9Y6X1 66 aa3.07□□□□□ -1.92
DEPDC4-201ENST00000299185 COA5Q86WW8 74 aa3.05□□□□□ -1.92
DEPDC4-201ENST00000299185 CHKB-CPT1BH3BT56 60 aa3.02□□□□□ -1.93
DEPDC4-201ENST00000299185 CSAG1Q6PB30 78 aa3.02□□□□□ -1.93
DEPDC4-201ENST00000299185 NEBP20929 6669 aa3.02□□□□□ -1.93
DEPDC4-201ENST00000299185 FCGBPQ9Y6R7 5405 aaPredicted RBP3.02□□□□□ -1.93
DEPDC4-201ENST00000299185 KRTAP10-10P60014 251 aa3.01□□□□□ -1.93
DEPDC4-201ENST00000299185 LCE1FQ5T754 118 aa3.01□□□□□ -1.93
DEPDC4-201ENST00000299185 KRTAP5-2Q701N4 177 aa3.01□□□□□ -1.93
DEPDC4-201ENST00000299185 USH2AO75445 5202 aa3.01□□□□□ -1.93
DEPDC4-201ENST00000299185 SPTSSBQ8NFR3 76 aa3□□□□□ -1.93
DEPDC4-201ENST00000299185 SMIM26A0A096LP01 95 aa2.99□□□□□ -1.93
DEPDC4-201ENST00000299185 KRTAP20-1Q3LI63 56 aa2.98□□□□□ -1.93
DEPDC4-201ENST00000299185 ADM2Q7Z4H4 148 aa2.98□□□□□ -1.93
DEPDC4-201ENST00000299185 P0C880 135 aa2.97□□□□□ -1.93
DEPDC4-201ENST00000299185 Q1T7F1 81 aa2.95□□□□□ -1.94
DEPDC4-201ENST00000299185 KRTAP6-3Q3LI67 103 aa2.95□□□□□ -1.94
DEPDC4-201ENST00000299185 V9GYY9 64 aa2.95□□□□□ -1.94
DEPDC4-201ENST00000299185 LINC01558Q9Y6Z2 57 aa2.93□□□□□ -1.94
DEPDC4-201ENST00000299185 H0YAA0 97 aa2.91□□□□□ -1.94
DEPDC4-201ENST00000299185 SEC61GP60059 68 aa2.91□□□□□ -1.94
DEPDC4-201ENST00000299185 A0A1B0GU69 56 aa2.89□□□□□ -1.95
DEPDC4-201ENST00000299185 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
DEPDC4-201ENST00000299185 PRR15LQ9BU68 103 aa2.89□□□□□ -1.95
DEPDC4-201ENST00000299185 KRTAP13-4Q3LI77 160 aa2.88□□□□□ -1.95
DEPDC4-201ENST00000299185 M0QZ58 72 aa2.87□□□□□ -1.95
DEPDC4-201ENST00000299185 PSPHP1O15172 72 aa2.87□□□□□ -1.95
DEPDC4-201ENST00000299185 MT1BP07438 61 aa2.87□□□□□ -1.95
DEPDC4-201ENST00000299185 SPRR2GQ9BYE4 73 aa2.86□□□□□ -1.95
DEPDC4-201ENST00000299185 LINC01554Q52M75 96 aa2.85□□□□□ -1.95
DEPDC4-201ENST00000299185 KRTAP19-8Q3LI54 63 aa2.84□□□□□ -1.95
DEPDC4-201ENST00000299185 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
DEPDC4-201ENST00000299185 Q5VV11 94 aa2.84□□□□□ -1.95
DEPDC4-201ENST00000299185 A0A1B0GU33 70 aa2.83□□□□□ -1.96
DEPDC4-201ENST00000299185 R4GN34 69 aa2.83□□□□□ -1.96
DEPDC4-201ENST00000299185 SPATA8Q6RVD6 105 aa2.82□□□□□ -1.96
DEPDC4-201ENST00000299185 PRAC1Q96KF2 57 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms