RNA–Protein interactions for RNA: ENST00000291386.3

SSU72-201, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSU72, Length 1,290 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-201ENST00000291386 KRTAP9-6A0A140TA67 174 aa12.59□□□□□ -0.39
SSU72-201ENST00000291386 CRCT1Q9UGL9 99 aa12.55□□□□□ -0.4
SSU72-201ENST00000291386 LCE2BO14633 110 aa12.49□□□□□ -0.41
SSU72-201ENST00000291386 USH2AO75445 5202 aa12.49□□□□□ -0.41
SSU72-201ENST00000291386 NDUFC1O43677 76 aa12.45□□□□□ -0.42
SSU72-201ENST00000291386 DMAC1Q96GE9 116 aa12.45□□□□□ -0.42
SSU72-201ENST00000291386 SERP2Q8N6R1 65 aa12.43□□□□□ -0.42
SSU72-201ENST00000291386 SNURFQ9Y675 71 aa12.33□□□□□ -0.44
SSU72-201ENST00000291386 H0YAA0 97 aa12.29□□□□□ -0.44
SSU72-201ENST00000291386 C20orf197Q8N268 126 aa12.29□□□□□ -0.44
SSU72-201ENST00000291386 SSPOA2VEC9 5147 aa12.27□□□□□ -0.45
SSU72-201ENST00000291386 ACYP2P14621 99 aa12.23□□□□□ -0.45
SSU72-201ENST00000291386 KRTAP19-1Q8IUB9 90 aa12.22□□□□□ -0.45
SSU72-201ENST00000291386 SPANXA2-OT1Q8N9U9 137 aa12.19□□□□□ -0.46
SSU72-201ENST00000291386 COX7CP15954 63 aa12.18□□□□□ -0.46
SSU72-201ENST00000291386 SPRR2GQ9BYE4 73 aa12.16□□□□□ -0.46
SSU72-201ENST00000291386 CRIPTQ9P021 101 aa12.15□□□□□ -0.46
SSU72-201ENST00000291386 ADM2Q7Z4H4 148 aa12.08□□□□□ -0.48
SSU72-201ENST00000291386 KRTAP19-8Q3LI54 63 aa12.01□□□□□ -0.49
SSU72-201ENST00000291386 KRTAP19-6Q3LI70 58 aa12.01□□□□□ -0.49
SSU72-201ENST00000291386 SPTSSBQ8NFR3 76 aa11.99□□□□□ -0.49
SSU72-201ENST00000291386 CHKB-CPT1BH3BT56 60 aa11.96□□□□□ -0.49
SSU72-201ENST00000291386 ANAPC13Q9BS18 74 aa11.95□□□□□ -0.5
SSU72-201ENST00000291386 Q5VV11 94 aa11.93□□□□□ -0.5
SSU72-201ENST00000291386 MT1BP07438 61 aa11.92□□□□□ -0.5
SSU72-201ENST00000291386 FCGBPQ9Y6R7 5405 aaPredicted RBP11.91□□□□□ -0.5
SSU72-201ENST00000291386 H7BZZ5 65 aa11.89□□□□□ -0.51
SSU72-201ENST00000291386 KRTAP3-2Q9BYR7 98 aa11.89□□□□□ -0.51
SSU72-201ENST00000291386 CYSTM1Q9H1C7 97 aa11.88□□□□□ -0.51
SSU72-201ENST00000291386 P0C880 135 aa11.87□□□□□ -0.51
SSU72-201ENST00000291386 COA5Q86WW8 74 aa11.77□□□□□ -0.53
SSU72-201ENST00000291386 R4GN34 69 aa11.75□□□□□ -0.53
SSU72-201ENST00000291386 CCDC179H3BU77 68 aa11.7□□□□□ -0.54
SSU72-201ENST00000291386 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.67□□□□□ -0.54
SSU72-201ENST00000291386 M0QZ58 72 aa11.67□□□□□ -0.54
SSU72-201ENST00000291386 A6NN06 94 aa11.58□□□□□ -0.56
SSU72-201ENST00000291386 KRTAP10-5P60370 271 aa11.56□□□□□ -0.56
SSU72-201ENST00000291386 MACF1Q9UPN3 7388 aaKnown RBP11.47□□□□□ -0.57
SSU72-201ENST00000291386 ATP5EP56381 51 aaPredicted RBP11.47□□□□□ -0.57
SSU72-201ENST00000291386 PLAC4Q8WY50 150 aa11.47□□□□□ -0.57
SSU72-201ENST00000291386 LINC01554Q52M75 96 aa11.42□□□□□ -0.58
SSU72-201ENST00000291386 SEC61GP60059 68 aa11.38□□□□□ -0.59
SSU72-201ENST00000291386 KRTAP9-7A8MTY7 169 aa11.37□□□□□ -0.59
SSU72-201ENST00000291386 SERP1Q9Y6X1 66 aa11.36□□□□□ -0.59
SSU72-201ENST00000291386 TMEM258P61165 79 aa11.32□□□□□ -0.6
SSU72-201ENST00000291386 PRO2289Q9P1D8 64 aa11.3□□□□□ -0.6
SSU72-201ENST00000291386 MT1XP80297 61 aa11.29□□□□□ -0.6
SSU72-201ENST00000291386 KRTAP13-4Q3LI77 160 aa11.29□□□□□ -0.6
SSU72-201ENST00000291386 SYNE2Q8WXH0 6885 aaKnown RBP11.28□□□□□ -0.6
SSU72-201ENST00000291386 A0A1B0GU33 70 aa11.16□□□□□ -0.62
SSU72-201ENST00000291386 A0A1B0GU69 56 aa11.15□□□□□ -0.62
SSU72-201ENST00000291386 KRTAP6-3Q3LI67 103 aa11.1□□□□□ -0.63
SSU72-201ENST00000291386 SPATA8Q6RVD6 105 aa11.04□□□□□ -0.64
SSU72-201ENST00000291386 LINC01558Q9Y6Z2 57 aa11.01□□□□□ -0.65
SSU72-201ENST00000291386 KRTAP12-2P59991 146 aa10.97□□□□□ -0.65
SSU72-201ENST00000291386 PRR15LQ9BU68 103 aa10.97□□□□□ -0.65
SSU72-201ENST00000291386 A0A0D9SG42 100 aa10.94□□□□□ -0.66
SSU72-201ENST00000291386 SMIM26A0A096LP01 95 aa10.85□□□□□ -0.67
SSU72-201ENST00000291386 CAMK2N1Q7Z7J9 78 aa10.85□□□□□ -0.67
SSU72-201ENST00000291386 KRTAP5-9P26371 169 aa10.81□□□□□ -0.68
SSU72-201ENST00000291386 KRTAP12-1P59990 96 aa10.8□□□□□ -0.68
SSU72-201ENST00000291386 SPINT4Q6UDR6 99 aa10.78□□□□□ -0.68
SSU72-201ENST00000291386 KRTAP10-7P60409 375 aaPredicted RBP10.77□□□□□ -0.69
SSU72-201ENST00000291386 KMT2DO14686 5537 aa10.76□□□□□ -0.69
SSU72-201ENST00000291386 KRTAP10-12P60413 245 aa10.76□□□□□ -0.69
SSU72-201ENST00000291386 PCP4P48539 62 aa10.74□□□□□ -0.69
SSU72-201ENST00000291386 A8MU10 97 aa10.72□□□□□ -0.69
SSU72-201ENST00000291386 KRTAP8-1Q8IUC2 63 aa10.64□□□□□ -0.71
SSU72-201ENST00000291386 V9GYY9 64 aa10.64□□□□□ -0.71
SSU72-201ENST00000291386 UQCR11O14957 56 aa10.63□□□□□ -0.71
SSU72-201ENST00000291386 MUC12Q9UKN1 5478 aa10.62□□□□□ -0.71
SSU72-201ENST00000291386 KRTAP4-8A0A0G2JLE6 195 aa10.62□□□□□ -0.71
SSU72-201ENST00000291386 KRTAP4-8Q9BYQ9 185 aa10.62□□□□□ -0.71
SSU72-201ENST00000291386 Q1T7F1 81 aa10.6□□□□□ -0.71
SSU72-201ENST00000291386 NEBP20929 6669 aa10.57□□□□□ -0.72
SSU72-201ENST00000291386 SPRR2FQ96RM1 72 aa10.52□□□□□ -0.73
SSU72-201ENST00000291386 RPS28P62857 69 aaKnown RBP10.48□□□□□ -0.73
SSU72-201ENST00000291386 PSPHP1O15172 72 aa10.43□□□□□ -0.74
SSU72-201ENST00000291386 MIR22HGQ0VDD5 57 aa10.41□□□□□ -0.74
SSU72-201ENST00000291386 MDN1Q9NU22 5596 aa10.4□□□□□ -0.74
SSU72-201ENST00000291386 C10orf95Q9H7T3 257 aa10.29□□□□□ -0.76
SSU72-201ENST00000291386 SPRR2EP22531 72 aa10.25□□□□□ -0.77
SSU72-201ENST00000291386 SPRR2BP35325 72 aa10.25□□□□□ -0.77
SSU72-201ENST00000291386 SPRR2AP35326 72 aa10.25□□□□□ -0.77
SSU72-201ENST00000291386 LCE1AQ5T7P2 110 aa10.22□□□□□ -0.77
SSU72-201ENST00000291386 TNP1P09430 55 aa10.17□□□□□ -0.78
SSU72-201ENST00000291386 A6NED7 52 aa10.12□□□□□ -0.79
SSU72-201ENST00000291386 K7ERS5 55 aa10.12□□□□□ -0.79
SSU72-201ENST00000291386 KRTAP19-7Q3SYF9 63 aa10.1□□□□□ -0.79
SSU72-201ENST00000291386 KRTAP20-1Q3LI63 56 aa10.01□□□□□ -0.81
SSU72-201ENST00000291386 MT1EP04732 61 aa9.98□□□□□ -0.81
SSU72-201ENST00000291386 KRTAP19-5Q3LI72 72 aa9.93□□□□□ -0.82
SSU72-201ENST00000291386 LCE3AQ5TA76 89 aa9.93□□□□□ -0.82
SSU72-201ENST00000291386 KRTAP2-3P0C7H8 128 aa9.91□□□□□ -0.82
SSU72-201ENST00000291386 SPRR2DP22532 72 aa9.91□□□□□ -0.82
SSU72-201ENST00000291386 KRTAP2-4Q9BYR9 128 aa9.91□□□□□ -0.82
SSU72-201ENST00000291386 KRTAP25-1Q3LHN0 102 aa9.85□□□□□ -0.83
SSU72-201ENST00000291386 KRTAP19-3Q7Z4W3 81 aa9.81□□□□□ -0.84
SSU72-201ENST00000291386 CDC42SE1Q9NRR8 79 aa9.81□□□□□ -0.84
SSU72-201ENST00000291386 LCE5AQ5TCM9 118 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms