RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 SEC61BP60468 96 aaKnown RBP10.82□□□□□ -0.68
YBX3-202ENST00000279550 BRK1Q8WUW1 75 aa10.81□□□□□ -0.68
YBX3-202ENST00000279550 PRO0628Q9UI54 55 aa10.69□□□□□ -0.7
YBX3-202ENST00000279550 A0A1B0GU69 56 aa10.67□□□□□ -0.7
YBX3-202ENST00000279550 A8MU10 97 aa10.67□□□□□ -0.7
YBX3-202ENST00000279550 A6NED7 52 aa10.65□□□□□ -0.7
YBX3-202ENST00000279550 MUC17Q685J3 4493 aa10.65□□□□□ -0.7
YBX3-202ENST00000279550 SPTSSBQ8NFR3 76 aa10.64□□□□□ -0.71
YBX3-202ENST00000279550 KRTAP4-1Q9BYQ7 146 aa10.61□□□□□ -0.71
YBX3-202ENST00000279550 LCA10Q71F78 164 aa10.59□□□□□ -0.71
YBX3-202ENST00000279550 SVIPQ8NHG7 77 aa10.55□□□□□ -0.72
YBX3-202ENST00000279550 CDC42SE1Q9NRR8 79 aa10.5□□□□□ -0.73
YBX3-202ENST00000279550 MUC2Q02817 5179 aa10.48□□□□□ -0.73
YBX3-202ENST00000279550 UBR4Q5T4S7 5183 aa10.48□□□□□ -0.73
YBX3-202ENST00000279550 S4R3F8 94 aa10.47□□□□□ -0.73
YBX3-202ENST00000279550 H1FX-AS1Q4G0G2 97 aa10.47□□□□□ -0.73
YBX3-202ENST00000279550 SEC61GP60059 68 aa10.44□□□□□ -0.74
YBX3-202ENST00000279550 RBM12B-AS1Q9P1G2 102 aa10.44□□□□□ -0.74
YBX3-202ENST00000279550 UQCR11O14957 56 aa10.37□□□□□ -0.75
YBX3-202ENST00000279550 SPATA8Q6RVD6 105 aa10.36□□□□□ -0.75
YBX3-202ENST00000279550 MIR22HGQ0VDD5 57 aa10.33□□□□□ -0.76
YBX3-202ENST00000279550 RNF213Q63HN8 5207 aa10.3□□□□□ -0.76
YBX3-202ENST00000279550 KRTAP19-2Q3LHN2 52 aa10.3□□□□□ -0.76
YBX3-202ENST00000279550 A0A1B0GU33 70 aa10.26□□□□□ -0.77
YBX3-202ENST00000279550 KRTAP10-6P60371 365 aaPredicted RBP10.24□□□□□ -0.77
YBX3-202ENST00000279550 H0YAA0 97 aa10.22□□□□□ -0.77
YBX3-202ENST00000279550 PMAIP1Q13794 54 aa10.19□□□□□ -0.78
YBX3-202ENST00000279550 CSAG1Q6PB30 78 aa10.16□□□□□ -0.78
YBX3-202ENST00000279550 A6NN06 94 aa10.15□□□□□ -0.78
YBX3-202ENST00000279550 LCE2CQ5TA81 110 aa10.13□□□□□ -0.79
YBX3-202ENST00000279550 P0C880 135 aa10.13□□□□□ -0.79
YBX3-202ENST00000279550 ADM2Q7Z4H4 148 aa10.09□□□□□ -0.79
YBX3-202ENST00000279550 KRTAP13-4Q3LI77 160 aa10.06□□□□□ -0.8
YBX3-202ENST00000279550 FAT4Q6V0I7 4981 aa10.03□□□□□ -0.8
YBX3-202ENST00000279550 FLGP20930 4061 aaPredicted RBP10.01□□□□□ -0.81
YBX3-202ENST00000279550 MT1HP80294 61 aa9.95□□□□□ -0.82
YBX3-202ENST00000279550 A0A0D9SG42 100 aa9.87□□□□□ -0.83
YBX3-202ENST00000279550 KTN1-AS1Q86SY8 53 aa9.85□□□□□ -0.83
YBX3-202ENST00000279550 M0R2T5 61 aa9.84□□□□□ -0.83
YBX3-202ENST00000279550 M0QZ58 72 aa9.75□□□□□ -0.85
YBX3-202ENST00000279550 LORP23490 312 aaPredicted RBP9.75□□□□□ -0.85
YBX3-202ENST00000279550 LCE2AQ5TA79 106 aaPredicted RBP9.7□□□□□ -0.86
YBX3-202ENST00000279550 K7ERS5 55 aa9.7□□□□□ -0.86
YBX3-202ENST00000279550 LCE2BO14633 110 aa9.68□□□□□ -0.86
YBX3-202ENST00000279550 KRTAP12-2P59991 146 aa9.65□□□□□ -0.86
YBX3-202ENST00000279550 KRTAP12-1P59990 96 aa9.64□□□□□ -0.87
YBX3-202ENST00000279550 PRAC1Q96KF2 57 aa9.64□□□□□ -0.87
YBX3-202ENST00000279550 R4GN34 69 aa9.63□□□□□ -0.87
YBX3-202ENST00000279550 LINC01554Q52M75 96 aa9.56□□□□□ -0.88
YBX3-202ENST00000279550 SPINT4Q6UDR6 99 aa9.56□□□□□ -0.88
YBX3-202ENST00000279550 KRTAP9-8Q9BYQ0 159 aa9.56□□□□□ -0.88
YBX3-202ENST00000279550 MT2AP02795 61 aa9.5□□□□□ -0.89
YBX3-202ENST00000279550 MT1FP04733 61 aa9.45□□□□□ -0.9
YBX3-202ENST00000279550 ROMO1P60602 79 aa9.45□□□□□ -0.9
YBX3-202ENST00000279550 KRTAP10-10P60014 251 aa9.42□□□□□ -0.9
YBX3-202ENST00000279550 CRIPTQ9P021 101 aa9.36□□□□□ -0.91
YBX3-202ENST00000279550 KRTAP25-1Q3LHN0 102 aa9.24□□□□□ -0.93
YBX3-202ENST00000279550 SPRR2GQ9BYE4 73 aa9.22□□□□□ -0.93
YBX3-202ENST00000279550 KRTAP19-1Q8IUB9 90 aa9.22□□□□□ -0.93
YBX3-202ENST00000279550 KRTAP9-3Q9BYQ3 159 aa9.22□□□□□ -0.93
YBX3-202ENST00000279550 C10orf95Q9H7T3 257 aa9.13□□□□□ -0.95
YBX3-202ENST00000279550 CAMK2N1Q7Z7J9 78 aa9.08□□□□□ -0.96
YBX3-202ENST00000279550 KRTAP19-8Q3LI54 63 aa9□□□□□ -0.97
YBX3-202ENST00000279550 PLAC4Q8WY50 150 aa8.91□□□□□ -0.98
YBX3-202ENST00000279550 MT1BP07438 61 aa8.9□□□□□ -0.98
YBX3-202ENST00000279550 USH2AO75445 5202 aa8.73□□□□□ -1.01
YBX3-202ENST00000279550 TNP1P09430 55 aa8.66□□□□□ -1.02
YBX3-202ENST00000279550 KRTAP9-2Q9BYQ4 174 aa8.64□□□□□ -1.03
YBX3-202ENST00000279550 MT1XP80297 61 aa8.6□□□□□ -1.03
YBX3-202ENST00000279550 KRTAP10-5P60370 271 aa8.6□□□□□ -1.03
YBX3-202ENST00000279550 PP632Q6XCG6 107 aa8.54□□□□□ -1.04
YBX3-202ENST00000279550 PRO2289Q9P1D8 64 aa8.51□□□□□ -1.05
YBX3-202ENST00000279550 FSIP2Q5CZC0 6907 aa8.5□□□□□ -1.05
YBX3-202ENST00000279550 KRTAP19-6Q3LI70 58 aa8.49□□□□□ -1.05
YBX3-202ENST00000279550 SSPOA2VEC9 5147 aa8.47□□□□□ -1.05
YBX3-202ENST00000279550 KRTAP23-1A1A580 65 aa8.45□□□□□ -1.06
YBX3-202ENST00000279550 LCE3AQ5TA76 89 aa8.36□□□□□ -1.07
YBX3-202ENST00000279550 KRTAP10-7P60409 375 aaPredicted RBP8.31□□□□□ -1.08
YBX3-202ENST00000279550 CRCT1Q9UGL9 99 aa8.3□□□□□ -1.08
YBX3-202ENST00000279550 KRTAP15-1Q3LI76 137 aa8.29□□□□□ -1.08
YBX3-202ENST00000279550 KRTAP10-12P60413 245 aa8.21□□□□□ -1.09
YBX3-202ENST00000279550 FCGBPQ9Y6R7 5405 aaPredicted RBP8.19□□□□□ -1.1
YBX3-202ENST00000279550 KRTAP8-1Q8IUC2 63 aa8.13□□□□□ -1.11
YBX3-202ENST00000279550 KRTAP9-6A0A140TA67 174 aa8.03□□□□□ -1.12
YBX3-202ENST00000279550 KMT2DO14686 5537 aa7.96□□□□□ -1.14
YBX3-202ENST00000279550 KRTAP4-8A0A0G2JLE6 195 aa7.95□□□□□ -1.14
YBX3-202ENST00000279550 KRTAP12-3P60328 96 aa7.95□□□□□ -1.14
YBX3-202ENST00000279550 KRTAP4-8Q9BYQ9 185 aa7.95□□□□□ -1.14
YBX3-202ENST00000279550 LOC100996750A0A140TA64 210 aa7.92□□□□□ -1.14
YBX3-202ENST00000279550 KRTAP4-6Q9BYQ5 205 aa7.92□□□□□ -1.14
YBX3-202ENST00000279550 KRTAP19-5Q3LI72 72 aa7.86□□□□□ -1.15
YBX3-202ENST00000279550 SPRR5A0A1B0GTR4 108 aa7.81□□□□□ -1.16
YBX3-202ENST00000279550 NDUFAF8A1L188 74 aa7.79□□□□□ -1.16
YBX3-202ENST00000279550 MACF1Q9UPN3 7388 aaKnown RBP7.78□□□□□ -1.16
YBX3-202ENST00000279550 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.69□□□□□ -1.18
YBX3-202ENST00000279550 KRTAP19-7Q3SYF9 63 aa7.67□□□□□ -1.18
YBX3-202ENST00000279550 LUZP6Q538Z0 58 aa7.59□□□□□ -1.19
YBX3-202ENST00000279550 MT1EP04732 61 aa7.52□□□□□ -1.2
YBX3-202ENST00000279550 SPRR2FQ96RM1 72 aa7.52□□□□□ -1.2
YBX3-202ENST00000279550 KRTAP5-9P26371 169 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms