RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 H1FX-AS1Q4G0G2 97 aa8.21□□□□□ -1.1
TPM1-201ENST00000267996 LINC01558Q9Y6Z2 57 aa8.2□□□□□ -1.1
TPM1-201ENST00000267996 SPTSSBQ8NFR3 76 aa8.18□□□□□ -1.1
TPM1-201ENST00000267996 S4R3F8 94 aa8.13□□□□□ -1.11
TPM1-201ENST00000267996 KRTAP19-2Q3LHN2 52 aa8.12□□□□□ -1.11
TPM1-201ENST00000267996 LCA10Q71F78 164 aa8.12□□□□□ -1.11
TPM1-201ENST00000267996 PSPHP1O15172 72 aa8.1□□□□□ -1.11
TPM1-201ENST00000267996 PRR15LQ9BU68 103 aa8.09□□□□□ -1.11
TPM1-201ENST00000267996 Q5VV11 94 aa8.07□□□□□ -1.12
TPM1-201ENST00000267996 MUC2Q02817 5179 aa8.03□□□□□ -1.12
TPM1-201ENST00000267996 A0A1B0GU69 56 aa8.02□□□□□ -1.13
TPM1-201ENST00000267996 FLGP20930 4061 aaPredicted RBP7.97□□□□□ -1.13
TPM1-201ENST00000267996 UBR4Q5T4S7 5183 aa7.96□□□□□ -1.14
TPM1-201ENST00000267996 RNF213Q63HN8 5207 aa7.96□□□□□ -1.14
TPM1-201ENST00000267996 CSAG1Q6PB30 78 aa7.95□□□□□ -1.14
TPM1-201ENST00000267996 SEC61GP60059 68 aa7.95□□□□□ -1.14
TPM1-201ENST00000267996 LCE2CQ5TA81 110 aa7.9□□□□□ -1.14
TPM1-201ENST00000267996 A6NED7 52 aa7.85□□□□□ -1.15
TPM1-201ENST00000267996 KRTAP10-6P60371 365 aaPredicted RBP7.85□□□□□ -1.15
TPM1-201ENST00000267996 H0YAA0 97 aa7.83□□□□□ -1.16
TPM1-201ENST00000267996 UQCR11O14957 56 aa7.79□□□□□ -1.16
TPM1-201ENST00000267996 BRK1Q8WUW1 75 aa7.79□□□□□ -1.16
TPM1-201ENST00000267996 A0A1B0GU33 70 aa7.78□□□□□ -1.16
TPM1-201ENST00000267996 ADM2Q7Z4H4 148 aa7.78□□□□□ -1.16
TPM1-201ENST00000267996 P0C880 135 aa7.76□□□□□ -1.17
TPM1-201ENST00000267996 FAT4Q6V0I7 4981 aa7.75□□□□□ -1.17
TPM1-201ENST00000267996 SPATA8Q6RVD6 105 aa7.74□□□□□ -1.17
TPM1-201ENST00000267996 CDC42SE1Q9NRR8 79 aa7.74□□□□□ -1.17
TPM1-201ENST00000267996 A8MU10 97 aa7.72□□□□□ -1.17
TPM1-201ENST00000267996 MIR22HGQ0VDD5 57 aa7.71□□□□□ -1.18
TPM1-201ENST00000267996 MT1HP80294 61 aa7.7□□□□□ -1.18
TPM1-201ENST00000267996 SVIPQ8NHG7 77 aa7.67□□□□□ -1.18
TPM1-201ENST00000267996 PRO0628Q9UI54 55 aa7.67□□□□□ -1.18
TPM1-201ENST00000267996 KRTAP13-4Q3LI77 160 aa7.63□□□□□ -1.19
TPM1-201ENST00000267996 M0QZ58 72 aa7.57□□□□□ -1.2
TPM1-201ENST00000267996 M0R2T5 61 aa7.57□□□□□ -1.2
TPM1-201ENST00000267996 LORP23490 312 aaPredicted RBP7.54□□□□□ -1.2
TPM1-201ENST00000267996 R4GN34 69 aa7.48□□□□□ -1.21
TPM1-201ENST00000267996 KRTAP9-8Q9BYQ0 159 aa7.45□□□□□ -1.22
TPM1-201ENST00000267996 CRIPTQ9P021 101 aa7.45□□□□□ -1.22
TPM1-201ENST00000267996 A0A0D9SG42 100 aa7.44□□□□□ -1.22
TPM1-201ENST00000267996 MT2AP02795 61 aa7.41□□□□□ -1.22
TPM1-201ENST00000267996 LCE2AQ5TA79 106 aaPredicted RBP7.39□□□□□ -1.23
TPM1-201ENST00000267996 A6NN06 94 aa7.37□□□□□ -1.23
TPM1-201ENST00000267996 MT1FP04733 61 aa7.37□□□□□ -1.23
TPM1-201ENST00000267996 PMAIP1Q13794 54 aa7.37□□□□□ -1.23
TPM1-201ENST00000267996 KRTAP12-1P59990 96 aa7.35□□□□□ -1.23
TPM1-201ENST00000267996 K7ERS5 55 aa7.32□□□□□ -1.24
TPM1-201ENST00000267996 KRTAP10-10P60014 251 aa7.32□□□□□ -1.24
TPM1-201ENST00000267996 LINC01554Q52M75 96 aa7.32□□□□□ -1.24
TPM1-201ENST00000267996 KRTAP12-2P59991 146 aa7.32□□□□□ -1.24
TPM1-201ENST00000267996 SPRR2GQ9BYE4 73 aa7.31□□□□□ -1.24
TPM1-201ENST00000267996 LCE2BO14633 110 aa7.3□□□□□ -1.24
TPM1-201ENST00000267996 KRTAP19-1Q8IUB9 90 aa7.28□□□□□ -1.24
TPM1-201ENST00000267996 SPINT4Q6UDR6 99 aa7.25□□□□□ -1.25
TPM1-201ENST00000267996 KRTAP9-3Q9BYQ3 159 aa7.18□□□□□ -1.26
TPM1-201ENST00000267996 KRTAP19-8Q3LI54 63 aa7.12□□□□□ -1.27
TPM1-201ENST00000267996 KTN1-AS1Q86SY8 53 aa7.09□□□□□ -1.27
TPM1-201ENST00000267996 LOC100996750A0A140TA64 210 aa7.07□□□□□ -1.28
TPM1-201ENST00000267996 KRTAP4-6Q9BYQ5 205 aa7.07□□□□□ -1.28
TPM1-201ENST00000267996 ROMO1P60602 79 aa7.06□□□□□ -1.28
TPM1-201ENST00000267996 PLAC4Q8WY50 150 aa7.02□□□□□ -1.29
TPM1-201ENST00000267996 MT1BP07438 61 aa7.01□□□□□ -1.29
TPM1-201ENST00000267996 CAMK2N1Q7Z7J9 78 aa7□□□□□ -1.29
TPM1-201ENST00000267996 C10orf95Q9H7T3 257 aa6.95□□□□□ -1.3
TPM1-201ENST00000267996 PRAC1Q96KF2 57 aa6.9□□□□□ -1.3
TPM1-201ENST00000267996 MT1XP80297 61 aa6.78□□□□□ -1.32
TPM1-201ENST00000267996 KRTAP10-5P60370 271 aa6.77□□□□□ -1.32
TPM1-201ENST00000267996 USH2AO75445 5202 aa6.76□□□□□ -1.33
TPM1-201ENST00000267996 KRTAP25-1Q3LHN0 102 aa6.76□□□□□ -1.33
TPM1-201ENST00000267996 TNP1P09430 55 aa6.7□□□□□ -1.34
TPM1-201ENST00000267996 PRO2289Q9P1D8 64 aa6.67□□□□□ -1.34
TPM1-201ENST00000267996 KRTAP23-1A1A580 65 aa6.56□□□□□ -1.36
TPM1-201ENST00000267996 SSPOA2VEC9 5147 aa6.55□□□□□ -1.36
TPM1-201ENST00000267996 PP632Q6XCG6 107 aa6.54□□□□□ -1.36
TPM1-201ENST00000267996 KRTAP19-6Q3LI70 58 aa6.53□□□□□ -1.36
TPM1-201ENST00000267996 KRTAP10-7P60409 375 aaPredicted RBP6.5□□□□□ -1.37
TPM1-201ENST00000267996 KRTAP10-12P60413 245 aa6.43□□□□□ -1.38
TPM1-201ENST00000267996 LCE3AQ5TA76 89 aa6.42□□□□□ -1.38
TPM1-201ENST00000267996 FSIP2Q5CZC0 6907 aa6.37□□□□□ -1.39
TPM1-201ENST00000267996 KRTAP9-2Q9BYQ4 174 aa6.36□□□□□ -1.39
TPM1-201ENST00000267996 KRTAP4-8Q9BYQ9 185 aa6.35□□□□□ -1.39
TPM1-201ENST00000267996 KRTAP8-1Q8IUC2 63 aa6.33□□□□□ -1.4
TPM1-201ENST00000267996 FCGBPQ9Y6R7 5405 aaPredicted RBP6.26□□□□□ -1.41
TPM1-201ENST00000267996 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.26□□□□□ -1.41
TPM1-201ENST00000267996 KRTAP4-8A0A0G2JLE6 195 aa6.23□□□□□ -1.41
TPM1-201ENST00000267996 KRTAP9-6A0A140TA67 174 aa6.2□□□□□ -1.42
TPM1-201ENST00000267996 KMT2DO14686 5537 aa6.19□□□□□ -1.42
TPM1-201ENST00000267996 KRTAP12-3P60328 96 aa6.17□□□□□ -1.42
TPM1-201ENST00000267996 CRCT1Q9UGL9 99 aa6.16□□□□□ -1.42
TPM1-201ENST00000267996 KRTAP19-5Q3LI72 72 aa6.13□□□□□ -1.43
TPM1-201ENST00000267996 KRTAP15-1Q3LI76 137 aa6.06□□□□□ -1.44
TPM1-201ENST00000267996 KRTAP19-7Q3SYF9 63 aa6.06□□□□□ -1.44
TPM1-201ENST00000267996 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
TPM1-201ENST00000267996 MT1EP04732 61 aa5.94□□□□□ -1.46
TPM1-201ENST00000267996 MACF1Q9UPN3 7388 aaKnown RBP5.94□□□□□ -1.46
TPM1-201ENST00000267996 KRTAP4-12Q9BQ66 201 aa5.93□□□□□ -1.46
TPM1-201ENST00000267996 KRTAP9-9Q9BYP9 154 aa5.92□□□□□ -1.46
TPM1-201ENST00000267996 KRTAP9-4Q9BYQ2 154 aa5.92□□□□□ -1.46
TPM1-201ENST00000267996 SPRR5A0A1B0GTR4 108 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms