RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 LCA10Q71F78 164 aa11.33□□□□□ -0.6
SMARCB1-201ENST00000263121 KRTAP3-3Q9BYR6 98 aa11.3□□□□□ -0.6
SMARCB1-201ENST00000263121 SPTSSBQ8NFR3 76 aa11.3□□□□□ -0.6
SMARCB1-201ENST00000263121 RNF213Q63HN8 5207 aa11.28□□□□□ -0.6
SMARCB1-201ENST00000263121 Q1T7F1 81 aa11.27□□□□□ -0.6
SMARCB1-201ENST00000263121 V9GYY9 64 aa11.22□□□□□ -0.61
SMARCB1-201ENST00000263121 LINC01558Q9Y6Z2 57 aa11.2□□□□□ -0.62
SMARCB1-201ENST00000263121 LCE2CQ5TA81 110 aa11.14□□□□□ -0.63
SMARCB1-201ENST00000263121 CSAG1Q6PB30 78 aa11.09□□□□□ -0.63
SMARCB1-201ENST00000263121 FLGP20930 4061 aaPredicted RBP11.09□□□□□ -0.63
SMARCB1-201ENST00000263121 PRR15LQ9BU68 103 aa11.07□□□□□ -0.64
SMARCB1-201ENST00000263121 PSPHP1O15172 72 aa11.05□□□□□ -0.64
SMARCB1-201ENST00000263121 A0A1B0GU69 56 aa11.02□□□□□ -0.64
SMARCB1-201ENST00000263121 Q5VV11 94 aa10.98□□□□□ -0.65
SMARCB1-201ENST00000263121 SEC61GP60059 68 aa10.96□□□□□ -0.65
SMARCB1-201ENST00000263121 FAT4Q6V0I7 4981 aa10.92□□□□□ -0.66
SMARCB1-201ENST00000263121 MT1HP80294 61 aa10.91□□□□□ -0.66
SMARCB1-201ENST00000263121 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
SMARCB1-201ENST00000263121 H0YAA0 97 aa10.88□□□□□ -0.67
SMARCB1-201ENST00000263121 KRTAP10-6P60371 365 aaPredicted RBP10.86□□□□□ -0.67
SMARCB1-201ENST00000263121 ADM2Q7Z4H4 148 aa10.83□□□□□ -0.68
SMARCB1-201ENST00000263121 P0C880 135 aa10.78□□□□□ -0.68
SMARCB1-201ENST00000263121 M0R2T5 61 aa10.74□□□□□ -0.69
SMARCB1-201ENST00000263121 A0A1B0GU33 70 aa10.72□□□□□ -0.69
SMARCB1-201ENST00000263121 A6NED7 52 aa10.71□□□□□ -0.69
SMARCB1-201ENST00000263121 UQCR11O14957 56 aa10.68□□□□□ -0.7
SMARCB1-201ENST00000263121 MIR22HGQ0VDD5 57 aa10.56□□□□□ -0.72
SMARCB1-201ENST00000263121 SPATA8Q6RVD6 105 aa10.56□□□□□ -0.72
SMARCB1-201ENST00000263121 KRTAP13-4Q3LI77 160 aa10.55□□□□□ -0.72
SMARCB1-201ENST00000263121 LCE2AQ5TA79 106 aaPredicted RBP10.54□□□□□ -0.72
SMARCB1-201ENST00000263121 BRK1Q8WUW1 75 aa10.54□□□□□ -0.72
SMARCB1-201ENST00000263121 LORP23490 312 aaPredicted RBP10.53□□□□□ -0.72
SMARCB1-201ENST00000263121 CDC42SE1Q9NRR8 79 aa10.53□□□□□ -0.72
SMARCB1-201ENST00000263121 KRTAP9-8Q9BYQ0 159 aa10.5□□□□□ -0.73
SMARCB1-201ENST00000263121 A8MU10 97 aa10.49□□□□□ -0.73
SMARCB1-201ENST00000263121 M0QZ58 72 aa10.49□□□□□ -0.73
SMARCB1-201ENST00000263121 MT2AP02795 61 aa10.47□□□□□ -0.73
SMARCB1-201ENST00000263121 R4GN34 69 aa10.44□□□□□ -0.74
SMARCB1-201ENST00000263121 CRIPTQ9P021 101 aa10.41□□□□□ -0.74
SMARCB1-201ENST00000263121 MT1FP04733 61 aa10.41□□□□□ -0.74
SMARCB1-201ENST00000263121 KRTAP10-10P60014 251 aa10.34□□□□□ -0.75
SMARCB1-201ENST00000263121 A0A0D9SG42 100 aa10.31□□□□□ -0.76
SMARCB1-201ENST00000263121 PRO0628Q9UI54 55 aa10.28□□□□□ -0.76
SMARCB1-201ENST00000263121 SPRR2GQ9BYE4 73 aa10.23□□□□□ -0.77
SMARCB1-201ENST00000263121 LINC01554Q52M75 96 aa10.22□□□□□ -0.77
SMARCB1-201ENST00000263121 KRTAP19-1Q8IUB9 90 aa10.21□□□□□ -0.78
SMARCB1-201ENST00000263121 KRTAP12-1P59990 96 aa10.15□□□□□ -0.79
SMARCB1-201ENST00000263121 KRTAP9-3Q9BYQ3 159 aa10.13□□□□□ -0.79
SMARCB1-201ENST00000263121 KRTAP12-2P59991 146 aa10.11□□□□□ -0.79
SMARCB1-201ENST00000263121 A6NN06 94 aa10.09□□□□□ -0.79
SMARCB1-201ENST00000263121 K7ERS5 55 aa10.06□□□□□ -0.8
SMARCB1-201ENST00000263121 SPINT4Q6UDR6 99 aa10.06□□□□□ -0.8
SMARCB1-201ENST00000263121 KRTAP19-8Q3LI54 63 aa9.98□□□□□ -0.81
SMARCB1-201ENST00000263121 PMAIP1Q13794 54 aa9.96□□□□□ -0.82
SMARCB1-201ENST00000263121 LCE2BO14633 110 aa9.86□□□□□ -0.83
SMARCB1-201ENST00000263121 MT1BP07438 61 aa9.85□□□□□ -0.83
SMARCB1-201ENST00000263121 PLAC4Q8WY50 150 aa9.83□□□□□ -0.84
SMARCB1-201ENST00000263121 CAMK2N1Q7Z7J9 78 aa9.76□□□□□ -0.85
SMARCB1-201ENST00000263121 ROMO1P60602 79 aa9.67□□□□□ -0.86
SMARCB1-201ENST00000263121 C10orf95Q9H7T3 257 aa9.61□□□□□ -0.87
SMARCB1-201ENST00000263121 LCE2DQ5TA82 110 aaPredicted RBP9.59□□□□□ -0.87
SMARCB1-201ENST00000263121 USH2AO75445 5202 aa9.57□□□□□ -0.88
SMARCB1-201ENST00000263121 KTN1-AS1Q86SY8 53 aa9.54□□□□□ -0.88
SMARCB1-201ENST00000263121 MT1XP80297 61 aa9.51□□□□□ -0.89
SMARCB1-201ENST00000263121 KRTAP10-5P60370 271 aa9.49□□□□□ -0.89
SMARCB1-201ENST00000263121 PRO2289Q9P1D8 64 aa9.38□□□□□ -0.91
SMARCB1-201ENST00000263121 PRAC1Q96KF2 57 aa9.36□□□□□ -0.91
SMARCB1-201ENST00000263121 KRTAP25-1Q3LHN0 102 aa9.32□□□□□ -0.92
SMARCB1-201ENST00000263121 SSPOA2VEC9 5147 aa9.29□□□□□ -0.92
SMARCB1-201ENST00000263121 TNP1P09430 55 aa9.29□□□□□ -0.92
SMARCB1-201ENST00000263121 KRTAP19-6Q3LI70 58 aa9.27□□□□□ -0.93
SMARCB1-201ENST00000263121 SVIPQ8NHG7 77 aa9.23□□□□□ -0.93
SMARCB1-201ENST00000263121 KRTAP9-2Q9BYQ4 174 aa9.23□□□□□ -0.93
SMARCB1-201ENST00000263121 KRTAP10-7P60409 375 aaPredicted RBP9.12□□□□□ -0.95
SMARCB1-201ENST00000263121 FSIP2Q5CZC0 6907 aa9.11□□□□□ -0.95
SMARCB1-201ENST00000263121 KRTAP23-1A1A580 65 aa9.02□□□□□ -0.97
SMARCB1-201ENST00000263121 KRTAP10-12P60413 245 aa9.02□□□□□ -0.97
SMARCB1-201ENST00000263121 PP632Q6XCG6 107 aa8.99□□□□□ -0.97
SMARCB1-201ENST00000263121 LCE3AQ5TA76 89 aa8.94□□□□□ -0.98
SMARCB1-201ENST00000263121 FCGBPQ9Y6R7 5405 aaPredicted RBP8.89□□□□□ -0.99
SMARCB1-201ENST00000263121 CRCT1Q9UGL9 99 aa8.88□□□□□ -0.99
SMARCB1-201ENST00000263121 KRTAP4-8A0A0G2JLE6 195 aa8.77□□□□□ -1.01
SMARCB1-201ENST00000263121 KRTAP4-8Q9BYQ9 185 aa8.77□□□□□ -1.01
SMARCB1-201ENST00000263121 KRTAP8-1Q8IUC2 63 aa8.76□□□□□ -1.01
SMARCB1-201ENST00000263121 KMT2DO14686 5537 aa8.7□□□□□ -1.02
SMARCB1-201ENST00000263121 KRTAP12-3P60328 96 aa8.57□□□□□ -1.04
SMARCB1-201ENST00000263121 KRTAP19-5Q3LI72 72 aa8.56□□□□□ -1.04
SMARCB1-201ENST00000263121 KRTAP9-6A0A140TA67 174 aa8.51□□□□□ -1.05
SMARCB1-201ENST00000263121 KRTAP19-7Q3SYF9 63 aa8.49□□□□□ -1.05
SMARCB1-201ENST00000263121 MACF1Q9UPN3 7388 aaKnown RBP8.41□□□□□ -1.06
SMARCB1-201ENST00000263121 KRTAP15-1Q3LI76 137 aa8.39□□□□□ -1.07
SMARCB1-201ENST00000263121 MT1EP04732 61 aa8.34□□□□□ -1.07
SMARCB1-201ENST00000263121 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.24□□□□□ -1.09
SMARCB1-201ENST00000263121 SPRR2FQ96RM1 72 aa8.2□□□□□ -1.1
SMARCB1-201ENST00000263121 KRTAP5-9P26371 169 aa8.17□□□□□ -1.1
SMARCB1-201ENST00000263121 MT1LQ93083 61 aa8.16□□□□□ -1.1
SMARCB1-201ENST00000263121 SYNE2Q8WXH0 6885 aaKnown RBP8.12□□□□□ -1.11
SMARCB1-201ENST00000263121 MUC12Q9UKN1 5478 aa8.07□□□□□ -1.12
SMARCB1-201ENST00000263121 KRTAP19-4Q3LI73 84 aa8.05□□□□□ -1.12
SMARCB1-201ENST00000263121 KRTAP6-3Q3LI67 103 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms