RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SPTSSBQ8NFR3 76 aa6.83□□□□□ -1.32
SPTLC1-201ENST00000262554 LCA10Q71F78 164 aa6.81□□□□□ -1.32
SPTLC1-201ENST00000262554 FAT3Q8TDW7 4589 aa6.81□□□□□ -1.32
SPTLC1-201ENST00000262554 KRTAP4-8Q9BYQ9 185 aa6.81□□□□□ -1.32
SPTLC1-201ENST00000262554 CDC42SE1Q9NRR8 79 aa6.81□□□□□ -1.32
SPTLC1-201ENST00000262554 A8MU10 97 aa6.8□□□□□ -1.32
SPTLC1-201ENST00000262554 KIAA1109Q2LD37 5005 aa6.78□□□□□ -1.32
SPTLC1-201ENST00000262554 COX6B2Q6YFQ2 88 aa6.78□□□□□ -1.32
SPTLC1-201ENST00000262554 KRTAP4-12Q9BQ66 201 aa6.77□□□□□ -1.33
SPTLC1-201ENST00000262554 SEC61GP60059 68 aa6.73□□□□□ -1.33
SPTLC1-201ENST00000262554 TPRXLQ17RH7 258 aa6.71□□□□□ -1.34
SPTLC1-201ENST00000262554 KRTAP4-5Q9BYR2 181 aa6.7□□□□□ -1.34
SPTLC1-201ENST00000262554 UQCR11O14957 56 aa6.7□□□□□ -1.34
SPTLC1-201ENST00000262554 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
SPTLC1-201ENST00000262554 EPPK1P58107 5090 aaKnown RBP6.69□□□□□ -1.34
SPTLC1-201ENST00000262554 PMAIP1Q13794 54 aa6.68□□□□□ -1.34
SPTLC1-201ENST00000262554 KRTAP9-2Q9BYQ4 174 aa6.68□□□□□ -1.34
SPTLC1-201ENST00000262554 MIR22HGQ0VDD5 57 aa6.65□□□□□ -1.34
SPTLC1-201ENST00000262554 SPATA8Q6RVD6 105 aa6.65□□□□□ -1.34
SPTLC1-201ENST00000262554 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.64□□□□□ -1.35
SPTLC1-201ENST00000262554 KRTAP9-6A0A140TA67 174 aa6.62□□□□□ -1.35
SPTLC1-201ENST00000262554 A6NN06 94 aa6.58□□□□□ -1.36
SPTLC1-201ENST00000262554 S4R3F8 94 aa6.57□□□□□ -1.36
SPTLC1-201ENST00000262554 LCE4AQ5TA78 99 aa6.56□□□□□ -1.36
SPTLC1-201ENST00000262554 A0A1B0GU33 70 aa6.54□□□□□ -1.36
SPTLC1-201ENST00000262554 H1FX-AS1Q4G0G2 97 aa6.53□□□□□ -1.36
SPTLC1-201ENST00000262554 KRTAP9-7A8MTY7 169 aa6.53□□□□□ -1.36
SPTLC1-201ENST00000262554 LCE3BQ5TA77 95 aa6.53□□□□□ -1.36
SPTLC1-201ENST00000262554 RBM12B-AS1Q9P1G2 102 aa6.52□□□□□ -1.37
SPTLC1-201ENST00000262554 SEC61BP60468 96 aaKnown RBP6.49□□□□□ -1.37
SPTLC1-201ENST00000262554 KTN1-AS1Q86SY8 53 aa6.49□□□□□ -1.37
SPTLC1-201ENST00000262554 H0YAA0 97 aa6.48□□□□□ -1.37
SPTLC1-201ENST00000262554 LRP2P98164 4655 aa6.44□□□□□ -1.38
SPTLC1-201ENST00000262554 ABCA13Q86UQ4 5058 aa6.41□□□□□ -1.38
SPTLC1-201ENST00000262554 KRTAP10-6P60371 365 aaPredicted RBP6.41□□□□□ -1.38
SPTLC1-201ENST00000262554 LPAP08519 4548 aa6.4□□□□□ -1.39
SPTLC1-201ENST00000262554 CSAG1Q6PB30 78 aa6.38□□□□□ -1.39
SPTLC1-201ENST00000262554 KRTAP9-9Q9BYP9 154 aa6.34□□□□□ -1.39
SPTLC1-201ENST00000262554 KRTAP9-4Q9BYQ2 154 aa6.34□□□□□ -1.39
SPTLC1-201ENST00000262554 BIRC6Q9NR09 4857 aa6.33□□□□□ -1.4
SPTLC1-201ENST00000262554 HERC2O95714 4834 aa6.33□□□□□ -1.4
SPTLC1-201ENST00000262554 ADM2Q7Z4H4 148 aa6.32□□□□□ -1.4
SPTLC1-201ENST00000262554 P0C880 135 aa6.32□□□□□ -1.4
SPTLC1-201ENST00000262554 K7ERS5 55 aa6.3□□□□□ -1.4
SPTLC1-201ENST00000262554 KRTAP4-1Q9BYQ7 146 aa6.3□□□□□ -1.4
SPTLC1-201ENST00000262554 KRTAP13-4Q3LI77 160 aa6.28□□□□□ -1.4
SPTLC1-201ENST00000262554 KRTAP9-3Q9BYQ3 159 aa6.26□□□□□ -1.41
SPTLC1-201ENST00000262554 A0A0D9SG42 100 aa6.23□□□□□ -1.41
SPTLC1-201ENST00000262554 PRAC1Q96KF2 57 aa6.22□□□□□ -1.41
SPTLC1-201ENST00000262554 A0A0A0MQY5 61 aa6.19□□□□□ -1.42
SPTLC1-201ENST00000262554 KRTAP15-1Q3LI76 137 aa6.19□□□□□ -1.42
SPTLC1-201ENST00000262554 MUC17Q685J3 4493 aa6.19□□□□□ -1.42
SPTLC1-201ENST00000262554 M0QZ58 72 aa6.18□□□□□ -1.42
SPTLC1-201ENST00000262554 KRTAP19-2Q3LHN2 52 aa6.17□□□□□ -1.42
SPTLC1-201ENST00000262554 KRTAP4-8A0A0G2JLE6 195 aa6.13□□□□□ -1.43
SPTLC1-201ENST00000262554 LCE1DQ5T752 114 aa6.13□□□□□ -1.43
SPTLC1-201ENST00000262554 R4GN34 69 aa6.08□□□□□ -1.44
SPTLC1-201ENST00000262554 KRTAP12-2P59991 146 aa6.07□□□□□ -1.44
SPTLC1-201ENST00000262554 ROMO1P60602 79 aa6.07□□□□□ -1.44
SPTLC1-201ENST00000262554 KRTAP12-1P59990 96 aa6.07□□□□□ -1.44
SPTLC1-201ENST00000262554 LCE5AQ5TCM9 118 aa6.07□□□□□ -1.44
SPTLC1-201ENST00000262554 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
SPTLC1-201ENST00000262554 PCLOQ9Y6V0 5065 aa6.03□□□□□ -1.44
SPTLC1-201ENST00000262554 KRTAP25-1Q3LHN0 102 aa6□□□□□ -1.45
SPTLC1-201ENST00000262554 LINC01554Q52M75 96 aa6□□□□□ -1.45
SPTLC1-201ENST00000262554 HERC1Q15751 4861 aa5.97□□□□□ -1.45
SPTLC1-201ENST00000262554 HMCN2Q8NDA2 5059 aa5.95□□□□□ -1.46
SPTLC1-201ENST00000262554 CRIPTQ9P021 101 aa5.94□□□□□ -1.46
SPTLC1-201ENST00000262554 FLGP20930 4061 aaPredicted RBP5.9□□□□□ -1.46
SPTLC1-201ENST00000262554 MUC2Q02817 5179 aa5.88□□□□□ -1.47
SPTLC1-201ENST00000262554 KRTAP4-7Q9BYR0 210 aa5.88□□□□□ -1.47
SPTLC1-201ENST00000262554 KRTAP4-9Q9BYQ8 210 aa5.87□□□□□ -1.47
SPTLC1-201ENST00000262554 M0R2T5 61 aa5.8□□□□□ -1.48
SPTLC1-201ENST00000262554 MT1HP80294 61 aa5.78□□□□□ -1.48
SPTLC1-201ENST00000262554 C10orf95Q9H7T3 257 aa5.78□□□□□ -1.48
SPTLC1-201ENST00000262554 KRTAP4-11Q9BYQ6 195 aa5.75□□□□□ -1.49
SPTLC1-201ENST00000262554 CAMK2N1Q7Z7J9 78 aa5.74□□□□□ -1.49
SPTLC1-201ENST00000262554 SPRR2GQ9BYE4 73 aa5.66□□□□□ -1.5
SPTLC1-201ENST00000262554 RNF213Q63HN8 5207 aa5.64□□□□□ -1.51
SPTLC1-201ENST00000262554 MT2AP02795 61 aa5.62□□□□□ -1.51
SPTLC1-201ENST00000262554 KRTAP10-10P60014 251 aa5.62□□□□□ -1.51
SPTLC1-201ENST00000262554 UBR4Q5T4S7 5183 aa5.62□□□□□ -1.51
SPTLC1-201ENST00000262554 FAT4Q6V0I7 4981 aa5.61□□□□□ -1.51
SPTLC1-201ENST00000262554 MT1FP04733 61 aa5.6□□□□□ -1.51
SPTLC1-201ENST00000262554 KRTAP9-8Q9BYQ0 159 aa5.6□□□□□ -1.51
SPTLC1-201ENST00000262554 KRTAP4-2Q9BYR5 136 aa5.6□□□□□ -1.51
SPTLC1-201ENST00000262554 PLAC4Q8WY50 150 aa5.59□□□□□ -1.51
SPTLC1-201ENST00000262554 PP632Q6XCG6 107 aa5.51□□□□□ -1.53
SPTLC1-201ENST00000262554 TNP1P09430 55 aa5.5□□□□□ -1.53
SPTLC1-201ENST00000262554 KRTAP19-8Q3LI54 63 aa5.47□□□□□ -1.53
SPTLC1-201ENST00000262554 MT1BP07438 61 aa5.37□□□□□ -1.55
SPTLC1-201ENST00000262554 KRTAP10-5P60370 271 aa5.27□□□□□ -1.57
SPTLC1-201ENST00000262554 MT1XP80297 61 aa5.27□□□□□ -1.57
SPTLC1-201ENST00000262554 LCE1AQ5T7P2 110 aa5.22□□□□□ -1.57
SPTLC1-201ENST00000262554 LCE3AQ5TA76 89 aa5.2□□□□□ -1.58
SPTLC1-201ENST00000262554 PRO2289Q9P1D8 64 aa5.2□□□□□ -1.58
SPTLC1-201ENST00000262554 NDUFAF8A1L188 74 aa5.13□□□□□ -1.59
SPTLC1-201ENST00000262554 KRTAP10-12P60413 245 aa5.12□□□□□ -1.59
SPTLC1-201ENST00000262554 KRTAP8-1Q8IUC2 63 aa5.09□□□□□ -1.59
SPTLC1-201ENST00000262554 KRTAP10-7P60409 375 aaPredicted RBP5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms