RNA–Protein interactions for RNA: ENST00000260563.4

RTCA-201, Transcript of RNA 3'-terminal phosphate cyclase, humanhuman

TSL 1 (best) BASIC

Gene RTCA, Length 1,534 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTCA-201ENST00000260563 ATP5EP56381 51 aaPredicted RBP10.18□□□□□ -0.78
RTCA-201ENST00000260563 S4R3F8 94 aa10.1□□□□□ -0.79
RTCA-201ENST00000260563 KRTAP10-6P60371 365 aaPredicted RBP10.09□□□□□ -0.79
RTCA-201ENST00000260563 LORP23490 312 aaPredicted RBP10.06□□□□□ -0.8
RTCA-201ENST00000260563 LCA10Q71F78 164 aa10.06□□□□□ -0.8
RTCA-201ENST00000260563 COA5Q86WW8 74 aa10.04□□□□□ -0.8
RTCA-201ENST00000260563 CHKB-CPT1BH3BT56 60 aa10.02□□□□□ -0.81
RTCA-201ENST00000260563 KRTAP3-3Q9BYR6 98 aa9.99□□□□□ -0.81
RTCA-201ENST00000260563 SERP1Q9Y6X1 66 aa9.92□□□□□ -0.82
RTCA-201ENST00000260563 CSAG1Q6PB30 78 aa9.91□□□□□ -0.82
RTCA-201ENST00000260563 LCE2DQ5TA82 110 aaPredicted RBP9.9□□□□□ -0.82
RTCA-201ENST00000260563 SPTSSBQ8NFR3 76 aa9.89□□□□□ -0.83
RTCA-201ENST00000260563 KRTAP9-8Q9BYQ0 159 aa9.87□□□□□ -0.83
RTCA-201ENST00000260563 MT2AP02795 61 aa9.81□□□□□ -0.84
RTCA-201ENST00000260563 RPS28P62857 69 aaKnown RBP9.75□□□□□ -0.85
RTCA-201ENST00000260563 MT1FP04733 61 aa9.74□□□□□ -0.85
RTCA-201ENST00000260563 KRTAP10-10P60014 251 aa9.72□□□□□ -0.85
RTCA-201ENST00000260563 KRTAP9-2Q9BYQ4 174 aa9.67□□□□□ -0.86
RTCA-201ENST00000260563 H0YAA0 97 aa9.66□□□□□ -0.86
RTCA-201ENST00000260563 SMIM26A0A096LP01 95 aa9.61□□□□□ -0.87
RTCA-201ENST00000260563 ADM2Q7Z4H4 148 aa9.61□□□□□ -0.87
RTCA-201ENST00000260563 LINC01558Q9Y6Z2 57 aa9.56□□□□□ -0.88
RTCA-201ENST00000260563 SEC61GP60059 68 aa9.55□□□□□ -0.88
RTCA-201ENST00000260563 KRTAP9-3Q9BYQ3 159 aa9.55□□□□□ -0.88
RTCA-201ENST00000260563 KRTAP3-2Q9BYR7 98 aa9.55□□□□□ -0.88
RTCA-201ENST00000260563 A0A1B0GU69 56 aa9.51□□□□□ -0.89
RTCA-201ENST00000260563 V9GYY9 64 aa9.51□□□□□ -0.89
RTCA-201ENST00000260563 P0C880 135 aa9.5□□□□□ -0.89
RTCA-201ENST00000260563 Q1T7F1 81 aa9.5□□□□□ -0.89
RTCA-201ENST00000260563 PRR15LQ9BU68 103 aa9.46□□□□□ -0.9
RTCA-201ENST00000260563 LCE2BO14633 110 aa9.39□□□□□ -0.91
RTCA-201ENST00000260563 CRIPTQ9P021 101 aa9.36□□□□□ -0.91
RTCA-201ENST00000260563 PSPHP1O15172 72 aa9.35□□□□□ -0.91
RTCA-201ENST00000260563 A0A1B0GU33 70 aa9.31□□□□□ -0.92
RTCA-201ENST00000260563 KRTAP19-1Q8IUB9 90 aa9.31□□□□□ -0.92
RTCA-201ENST00000260563 SPRR2GQ9BYE4 73 aa9.3□□□□□ -0.92
RTCA-201ENST00000260563 R4GN34 69 aa9.3□□□□□ -0.92
RTCA-201ENST00000260563 FSIP2Q5CZC0 6907 aa9.29□□□□□ -0.92
RTCA-201ENST00000260563 USH2AO75445 5202 aa9.29□□□□□ -0.92
RTCA-201ENST00000260563 M0QZ58 72 aa9.26□□□□□ -0.93
RTCA-201ENST00000260563 Q5VV11 94 aa9.26□□□□□ -0.93
RTCA-201ENST00000260563 CRCT1Q9UGL9 99 aa9.22□□□□□ -0.93
RTCA-201ENST00000260563 KRTAP13-4Q3LI77 160 aa9.21□□□□□ -0.94
RTCA-201ENST00000260563 KRTAP9-6A0A140TA67 174 aa9.17□□□□□ -0.94
RTCA-201ENST00000260563 SPATA8Q6RVD6 105 aa9.17□□□□□ -0.94
RTCA-201ENST00000260563 UQCR11O14957 56 aa9.16□□□□□ -0.94
RTCA-201ENST00000260563 KRTAP19-8Q3LI54 63 aa9.15□□□□□ -0.95
RTCA-201ENST00000260563 SSPOA2VEC9 5147 aa9.13□□□□□ -0.95
RTCA-201ENST00000260563 LINC01554Q52M75 96 aa9.09□□□□□ -0.95
RTCA-201ENST00000260563 A6NED7 52 aa9.07□□□□□ -0.96
RTCA-201ENST00000260563 MT1BP07438 61 aa9.07□□□□□ -0.96
RTCA-201ENST00000260563 MIR22HGQ0VDD5 57 aa9.04□□□□□ -0.96
RTCA-201ENST00000260563 A0A0D9SG42 100 aa9.01□□□□□ -0.97
RTCA-201ENST00000260563 A8MU10 97 aa9□□□□□ -0.97
RTCA-201ENST00000260563 KRTAP19-6Q3LI70 58 aa8.99□□□□□ -0.97
RTCA-201ENST00000260563 A6NN06 94 aa8.93□□□□□ -0.98
RTCA-201ENST00000260563 PLAC4Q8WY50 150 aa8.89□□□□□ -0.99
RTCA-201ENST00000260563 CDC42SE1Q9NRR8 79 aa8.86□□□□□ -0.99
RTCA-201ENST00000260563 KRTAP12-1P59990 96 aa8.85□□□□□ -0.99
RTCA-201ENST00000260563 SPINT4Q6UDR6 99 aa8.84□□□□□ -0.99
RTCA-201ENST00000260563 KRTAP12-2P59991 146 aa8.81□□□□□ -1
RTCA-201ENST00000260563 FCGBPQ9Y6R7 5405 aaPredicted RBP8.8□□□□□ -1
RTCA-201ENST00000260563 KRTAP10-5P60370 271 aa8.76□□□□□ -1.01
RTCA-201ENST00000260563 BRK1Q8WUW1 75 aa8.74□□□□□ -1.01
RTCA-201ENST00000260563 K7ERS5 55 aa8.7□□□□□ -1.02
RTCA-201ENST00000260563 PRO2289Q9P1D8 64 aa8.68□□□□□ -1.02
RTCA-201ENST00000260563 CAMK2N1Q7Z7J9 78 aa8.67□□□□□ -1.02
RTCA-201ENST00000260563 MT1XP80297 61 aa8.64□□□□□ -1.03
RTCA-201ENST00000260563 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.57□□□□□ -1.04
RTCA-201ENST00000260563 MACF1Q9UPN3 7388 aaKnown RBP8.5□□□□□ -1.05
RTCA-201ENST00000260563 C10orf95Q9H7T3 257 aa8.39□□□□□ -1.07
RTCA-201ENST00000260563 PRO0628Q9UI54 55 aa8.38□□□□□ -1.07
RTCA-201ENST00000260563 KRTAP9-7A8MTY7 169 aa8.31□□□□□ -1.08
RTCA-201ENST00000260563 SYNE2Q8WXH0 6885 aaKnown RBP8.31□□□□□ -1.08
RTCA-201ENST00000260563 ROMO1P60602 79 aa8.28□□□□□ -1.08
RTCA-201ENST00000260563 KRTAP10-7P60409 375 aaPredicted RBP8.27□□□□□ -1.09
RTCA-201ENST00000260563 PMAIP1Q13794 54 aa8.25□□□□□ -1.09
RTCA-201ENST00000260563 KRTAP10-12P60413 245 aa8.22□□□□□ -1.09
RTCA-201ENST00000260563 TNP1P09430 55 aa8.2□□□□□ -1.1
RTCA-201ENST00000260563 KMT2DO14686 5537 aa8.19□□□□□ -1.1
RTCA-201ENST00000260563 KRTAP6-3Q3LI67 103 aa8.18□□□□□ -1.1
RTCA-201ENST00000260563 KRTAP25-1Q3LHN0 102 aa8.13□□□□□ -1.11
RTCA-201ENST00000260563 KRTAP4-8A0A0G2JLE6 195 aa8.09□□□□□ -1.11
RTCA-201ENST00000260563 KRTAP8-1Q8IUC2 63 aa8.09□□□□□ -1.11
RTCA-201ENST00000260563 KRTAP4-8Q9BYQ9 185 aa8.09□□□□□ -1.11
RTCA-201ENST00000260563 KRTAP5-9P26371 169 aa8.03□□□□□ -1.12
RTCA-201ENST00000260563 LOC100996750A0A140TA64 210 aa7.98□□□□□ -1.13
RTCA-201ENST00000260563 KRTAP4-6Q9BYQ5 205 aa7.98□□□□□ -1.13
RTCA-201ENST00000260563 SPRR2FQ96RM1 72 aa7.95□□□□□ -1.14
RTCA-201ENST00000260563 LCE3AQ5TA76 89 aa7.9□□□□□ -1.14
RTCA-201ENST00000260563 MUC12Q9UKN1 5478 aa7.9□□□□□ -1.15
RTCA-201ENST00000260563 KRTAP23-1A1A580 65 aa7.86□□□□□ -1.15
RTCA-201ENST00000260563 KTN1-AS1Q86SY8 53 aa7.82□□□□□ -1.16
RTCA-201ENST00000260563 PP632Q6XCG6 107 aa7.79□□□□□ -1.16
RTCA-201ENST00000260563 PRAC1Q96KF2 57 aa7.76□□□□□ -1.17
RTCA-201ENST00000260563 SPRR2EP22531 72 aa7.71□□□□□ -1.18
RTCA-201ENST00000260563 SPRR2BP35325 72 aa7.71□□□□□ -1.18
RTCA-201ENST00000260563 SPRR2AP35326 72 aa7.71□□□□□ -1.18
RTCA-201ENST00000260563 KRTAP19-7Q3SYF9 63 aa7.71□□□□□ -1.18
RTCA-201ENST00000260563 MDN1Q9NU22 5596 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms