RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 A0A1B0GU69 56 aa9.98□□□□□ -0.81
PDLIM4-201ENST00000253754 HERC1Q15751 4861 aa9.96□□□□□ -0.82
PDLIM4-201ENST00000253754 KRTAP3-1Q9BYR8 98 aa9.93□□□□□ -0.82
PDLIM4-201ENST00000253754 LINC01554Q52M75 96 aa9.9□□□□□ -0.82
PDLIM4-201ENST00000253754 J3QL48 77 aa9.9□□□□□ -0.83
PDLIM4-201ENST00000253754 PRAC1Q96KF2 57 aa9.9□□□□□ -0.83
PDLIM4-201ENST00000253754 H3BS24 57 aa9.82□□□□□ -0.84
PDLIM4-201ENST00000253754 ADM2Q7Z4H4 148 aa9.81□□□□□ -0.84
PDLIM4-201ENST00000253754 XP32Q5T750 250 aa9.79□□□□□ -0.84
PDLIM4-201ENST00000253754 LPAP08519 4548 aa9.77□□□□□ -0.84
PDLIM4-201ENST00000253754 RPL37P61927 97 aaKnown RBP9.76□□□□□ -0.85
PDLIM4-201ENST00000253754 SPATA8Q6RVD6 105 aa9.75□□□□□ -0.85
PDLIM4-201ENST00000253754 COX6B2Q6YFQ2 88 aa9.75□□□□□ -0.85
PDLIM4-201ENST00000253754 UQCR11O14957 56 aa9.74□□□□□ -0.85
PDLIM4-201ENST00000253754 MIR22HGQ0VDD5 57 aa9.72□□□□□ -0.85
PDLIM4-201ENST00000253754 TPRXLQ17RH7 258 aa9.65□□□□□ -0.87
PDLIM4-201ENST00000253754 LRP2P98164 4655 aa9.64□□□□□ -0.87
PDLIM4-201ENST00000253754 HMCN2Q8NDA2 5059 aa9.6□□□□□ -0.87
PDLIM4-201ENST00000253754 CSAG1Q6PB30 78 aa9.56□□□□□ -0.88
PDLIM4-201ENST00000253754 H0YAA0 97 aa9.54□□□□□ -0.88
PDLIM4-201ENST00000253754 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
PDLIM4-201ENST00000253754 A0A1B0GU33 70 aa9.51□□□□□ -0.89
PDLIM4-201ENST00000253754 H1FX-AS1Q4G0G2 97 aa9.49□□□□□ -0.89
PDLIM4-201ENST00000253754 S4R3F8 94 aa9.44□□□□□ -0.9
PDLIM4-201ENST00000253754 MUC2Q02817 5179 aa9.43□□□□□ -0.9
PDLIM4-201ENST00000253754 UBR4Q5T4S7 5183 aa9.42□□□□□ -0.9
PDLIM4-201ENST00000253754 KRTAP10-6P60371 365 aaPredicted RBP9.36□□□□□ -0.91
PDLIM4-201ENST00000253754 RNF213Q63HN8 5207 aa9.33□□□□□ -0.92
PDLIM4-201ENST00000253754 KRTAP3-2Q9BYR7 98 aa9.32□□□□□ -0.92
PDLIM4-201ENST00000253754 SEC61BP60468 96 aaKnown RBP9.31□□□□□ -0.92
PDLIM4-201ENST00000253754 KRTAP25-1Q3LHN0 102 aa9.28□□□□□ -0.92
PDLIM4-201ENST00000253754 ROMO1P60602 79 aa9.27□□□□□ -0.93
PDLIM4-201ENST00000253754 KRTAP13-4Q3LI77 160 aa9.26□□□□□ -0.93
PDLIM4-201ENST00000253754 P0C880 135 aa9.24□□□□□ -0.93
PDLIM4-201ENST00000253754 KRTAP4-1Q9BYQ7 146 aa9.17□□□□□ -0.94
PDLIM4-201ENST00000253754 A0A0D9SG42 100 aa9.16□□□□□ -0.94
PDLIM4-201ENST00000253754 MUC17Q685J3 4493 aa9.16□□□□□ -0.94
PDLIM4-201ENST00000253754 K7ERS5 55 aa9.07□□□□□ -0.96
PDLIM4-201ENST00000253754 FAT4Q6V0I7 4981 aa8.98□□□□□ -0.97
PDLIM4-201ENST00000253754 KRTAP12-2P59991 146 aa8.92□□□□□ -0.98
PDLIM4-201ENST00000253754 CRIPTQ9P021 101 aa8.92□□□□□ -0.98
PDLIM4-201ENST00000253754 KRTAP19-2Q3LHN2 52 aa8.89□□□□□ -0.99
PDLIM4-201ENST00000253754 KRTAP12-1P59990 96 aa8.85□□□□□ -0.99
PDLIM4-201ENST00000253754 SPINT4Q6UDR6 99 aa8.84□□□□□ -0.99
PDLIM4-201ENST00000253754 M0QZ58 72 aa8.84□□□□□ -0.99
PDLIM4-201ENST00000253754 LORP23490 312 aaPredicted RBP8.78□□□□□ -1
PDLIM4-201ENST00000253754 FLGP20930 4061 aaPredicted RBP8.75□□□□□ -1.01
PDLIM4-201ENST00000253754 R4GN34 69 aa8.74□□□□□ -1.01
PDLIM4-201ENST00000253754 LCE2CQ5TA81 110 aa8.67□□□□□ -1.02
PDLIM4-201ENST00000253754 KRTAP15-1Q3LI76 137 aa8.64□□□□□ -1.03
PDLIM4-201ENST00000253754 C10orf95Q9H7T3 257 aa8.64□□□□□ -1.03
PDLIM4-201ENST00000253754 NDUFAF8A1L188 74 aa8.57□□□□□ -1.04
PDLIM4-201ENST00000253754 MT1HP80294 61 aa8.5□□□□□ -1.05
PDLIM4-201ENST00000253754 M0R2T5 61 aa8.49□□□□□ -1.05
PDLIM4-201ENST00000253754 A0A0A0MQY5 61 aa8.32□□□□□ -1.08
PDLIM4-201ENST00000253754 LCE2AQ5TA79 106 aaPredicted RBP8.27□□□□□ -1.09
PDLIM4-201ENST00000253754 CAMK2N1Q7Z7J9 78 aa8.27□□□□□ -1.09
PDLIM4-201ENST00000253754 KRTAP9-8Q9BYQ0 159 aa8.19□□□□□ -1.1
PDLIM4-201ENST00000253754 MT2AP02795 61 aa8.18□□□□□ -1.1
PDLIM4-201ENST00000253754 KRTAP10-10P60014 251 aa8.15□□□□□ -1.1
PDLIM4-201ENST00000253754 MT1FP04733 61 aa8.14□□□□□ -1.11
PDLIM4-201ENST00000253754 KRTAP19-1Q8IUB9 90 aa8.09□□□□□ -1.11
PDLIM4-201ENST00000253754 SPRR2GQ9BYE4 73 aa8.07□□□□□ -1.12
PDLIM4-201ENST00000253754 LUZP6Q538Z0 58 aa8.05□□□□□ -1.12
PDLIM4-201ENST00000253754 PLAC4Q8WY50 150 aa7.93□□□□□ -1.14
PDLIM4-201ENST00000253754 FSIP2Q5CZC0 6907 aa7.92□□□□□ -1.14
PDLIM4-201ENST00000253754 USH2AO75445 5202 aa7.91□□□□□ -1.14
PDLIM4-201ENST00000253754 TNP1P09430 55 aa7.89□□□□□ -1.15
PDLIM4-201ENST00000253754 PP632Q6XCG6 107 aa7.89□□□□□ -1.15
PDLIM4-201ENST00000253754 KRTAP9-3Q9BYQ3 159 aa7.89□□□□□ -1.15
PDLIM4-201ENST00000253754 KRTAP19-8Q3LI54 63 aa7.77□□□□□ -1.17
PDLIM4-201ENST00000253754 LCE2BO14633 110 aa7.71□□□□□ -1.18
PDLIM4-201ENST00000253754 MT1BP07438 61 aa7.71□□□□□ -1.18
PDLIM4-201ENST00000253754 KRTAP23-1A1A580 65 aa7.67□□□□□ -1.18
PDLIM4-201ENST00000253754 KRTAP10-5P60370 271 aa7.61□□□□□ -1.19
PDLIM4-201ENST00000253754 MT1XP80297 61 aa7.6□□□□□ -1.19
PDLIM4-201ENST00000253754 LCE3AQ5TA76 89 aa7.58□□□□□ -1.2
PDLIM4-201ENST00000253754 SSPOA2VEC9 5147 aa7.57□□□□□ -1.2
PDLIM4-201ENST00000253754 KRTAP9-2Q9BYQ4 174 aa7.51□□□□□ -1.21
PDLIM4-201ENST00000253754 LCE2DQ5TA82 110 aaPredicted RBP7.48□□□□□ -1.21
PDLIM4-201ENST00000253754 KRTAP10-7P60409 375 aaPredicted RBP7.39□□□□□ -1.23
PDLIM4-201ENST00000253754 SPRR5A0A1B0GTR4 108 aa7.38□□□□□ -1.23
PDLIM4-201ENST00000253754 PRO2289Q9P1D8 64 aa7.36□□□□□ -1.23
PDLIM4-201ENST00000253754 KRTAP10-12P60413 245 aa7.35□□□□□ -1.23
PDLIM4-201ENST00000253754 KRTAP8-1Q8IUC2 63 aa7.34□□□□□ -1.24
PDLIM4-201ENST00000253754 FCGBPQ9Y6R7 5405 aaPredicted RBP7.26□□□□□ -1.25
PDLIM4-201ENST00000253754 KRTAP12-3P60328 96 aa7.2□□□□□ -1.26
PDLIM4-201ENST00000253754 KMT2DO14686 5537 aa7.2□□□□□ -1.26
PDLIM4-201ENST00000253754 CRCT1Q9UGL9 99 aa7.17□□□□□ -1.26
PDLIM4-201ENST00000253754 KRTAP19-6Q3LI70 58 aa7.15□□□□□ -1.26
PDLIM4-201ENST00000253754 KRTAP19-5Q3LI72 72 aa7.02□□□□□ -1.29
PDLIM4-201ENST00000253754 MACF1Q9UPN3 7388 aaKnown RBP7.02□□□□□ -1.29
PDLIM4-201ENST00000253754 KRTAP4-8A0A0G2JLE6 195 aa7.01□□□□□ -1.29
PDLIM4-201ENST00000253754 KRTAP4-8Q9BYQ9 185 aa7.01□□□□□ -1.29
PDLIM4-201ENST00000253754 INE1O15225 51 aa6.98□□□□□ -1.29
PDLIM4-201ENST00000253754 KRTAP9-6A0A140TA67 174 aa6.97□□□□□ -1.29
PDLIM4-201ENST00000253754 SYNE2Q8WXH0 6885 aaKnown RBP6.92□□□□□ -1.3
PDLIM4-201ENST00000253754 KRTAP19-7Q3SYF9 63 aa6.78□□□□□ -1.32
PDLIM4-201ENST00000253754 LCE3CQ5T5A8 94 aa6.76□□□□□ -1.33
PDLIM4-201ENST00000253754 MUC12Q9UKN1 5478 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms