RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 Q5VV11 94 aa7.44□□□□□ -1.22
RTFDC1-201ENST00000023939 PRR15LQ9BU68 103 aa7.44□□□□□ -1.22
RTFDC1-201ENST00000023939 HERC1Q15751 4861 aa7.38□□□□□ -1.23
RTFDC1-201ENST00000023939 SPTSSBQ8NFR3 76 aa7.38□□□□□ -1.23
RTFDC1-201ENST00000023939 BRK1Q8WUW1 75 aa7.35□□□□□ -1.23
RTFDC1-201ENST00000023939 A0A1B0GU69 56 aa7.3□□□□□ -1.24
RTFDC1-201ENST00000023939 SEC61BP60468 96 aaKnown RBP7.28□□□□□ -1.24
RTFDC1-201ENST00000023939 LRP2P98164 4655 aa7.26□□□□□ -1.25
RTFDC1-201ENST00000023939 A6NED7 52 aa7.24□□□□□ -1.25
RTFDC1-201ENST00000023939 H1FX-AS1Q4G0G2 97 aa7.21□□□□□ -1.25
RTFDC1-201ENST00000023939 LPAP08519 4548 aa7.21□□□□□ -1.25
RTFDC1-201ENST00000023939 SEC61GP60059 68 aa7.2□□□□□ -1.26
RTFDC1-201ENST00000023939 RBM12B-AS1Q9P1G2 102 aa7.2□□□□□ -1.26
RTFDC1-201ENST00000023939 CDC42SE1Q9NRR8 79 aa7.19□□□□□ -1.26
RTFDC1-201ENST00000023939 LCA10Q71F78 164 aa7.18□□□□□ -1.26
RTFDC1-201ENST00000023939 S4R3F8 94 aa7.18□□□□□ -1.26
RTFDC1-201ENST00000023939 UQCR11O14957 56 aa7.13□□□□□ -1.27
RTFDC1-201ENST00000023939 A8MU10 97 aa7.13□□□□□ -1.27
RTFDC1-201ENST00000023939 SPATA8Q6RVD6 105 aa7.1□□□□□ -1.27
RTFDC1-201ENST00000023939 KRTAP4-1Q9BYQ7 146 aa7.1□□□□□ -1.27
RTFDC1-201ENST00000023939 MUC17Q685J3 4493 aa7.08□□□□□ -1.28
RTFDC1-201ENST00000023939 MIR22HGQ0VDD5 57 aa7.06□□□□□ -1.28
RTFDC1-201ENST00000023939 HMCN2Q8NDA2 5059 aa7.06□□□□□ -1.28
RTFDC1-201ENST00000023939 A0A1B0GU33 70 aa7.03□□□□□ -1.28
RTFDC1-201ENST00000023939 PMAIP1Q13794 54 aa7.02□□□□□ -1.29
RTFDC1-201ENST00000023939 CSAG1Q6PB30 78 aa7.01□□□□□ -1.29
RTFDC1-201ENST00000023939 KRTAP10-6P60371 365 aaPredicted RBP7□□□□□ -1.29
RTFDC1-201ENST00000023939 KRTAP19-2Q3LHN2 52 aa6.99□□□□□ -1.29
RTFDC1-201ENST00000023939 UBR4Q5T4S7 5183 aa6.98□□□□□ -1.29
RTFDC1-201ENST00000023939 H0YAA0 97 aa6.96□□□□□ -1.3
RTFDC1-201ENST00000023939 A6NN06 94 aa6.9□□□□□ -1.31
RTFDC1-201ENST00000023939 ADM2Q7Z4H4 148 aa6.89□□□□□ -1.31
RTFDC1-201ENST00000023939 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
RTFDC1-201ENST00000023939 P0C880 135 aa6.88□□□□□ -1.31
RTFDC1-201ENST00000023939 KRTAP4-6Q9BYQ5 205 aa6.88□□□□□ -1.31
RTFDC1-201ENST00000023939 KTN1-AS1Q86SY8 53 aa6.87□□□□□ -1.31
RTFDC1-201ENST00000023939 KRTAP13-4Q3LI77 160 aa6.81□□□□□ -1.32
RTFDC1-201ENST00000023939 RNF213Q63HN8 5207 aa6.77□□□□□ -1.33
RTFDC1-201ENST00000023939 M0QZ58 72 aa6.76□□□□□ -1.33
RTFDC1-201ENST00000023939 K7ERS5 55 aa6.7□□□□□ -1.34
RTFDC1-201ENST00000023939 MUC2Q02817 5179 aa6.69□□□□□ -1.34
RTFDC1-201ENST00000023939 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
RTFDC1-201ENST00000023939 A0A0D9SG42 100 aa6.66□□□□□ -1.34
RTFDC1-201ENST00000023939 R4GN34 69 aa6.62□□□□□ -1.35
RTFDC1-201ENST00000023939 KRTAP12-1P59990 96 aa6.58□□□□□ -1.36
RTFDC1-201ENST00000023939 MT1HP80294 61 aa6.56□□□□□ -1.36
RTFDC1-201ENST00000023939 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
RTFDC1-201ENST00000023939 CRIPTQ9P021 101 aa6.55□□□□□ -1.36
RTFDC1-201ENST00000023939 SPINT4Q6UDR6 99 aa6.5□□□□□ -1.37
RTFDC1-201ENST00000023939 ROMO1P60602 79 aa6.47□□□□□ -1.37
RTFDC1-201ENST00000023939 LINC01554Q52M75 96 aa6.47□□□□□ -1.37
RTFDC1-201ENST00000023939 M0R2T5 61 aa6.46□□□□□ -1.38
RTFDC1-201ENST00000023939 PRAC1Q96KF2 57 aa6.45□□□□□ -1.38
RTFDC1-201ENST00000023939 FAT4Q6V0I7 4981 aa6.44□□□□□ -1.38
RTFDC1-201ENST00000023939 KRTAP4-8Q9BYQ9 185 aa6.42□□□□□ -1.38
RTFDC1-201ENST00000023939 H3BS24 57 aa6.39□□□□□ -1.39
RTFDC1-201ENST00000023939 KRTAP9-8Q9BYQ0 159 aa6.36□□□□□ -1.39
RTFDC1-201ENST00000023939 MT2AP02795 61 aa6.36□□□□□ -1.39
RTFDC1-201ENST00000023939 SPRR2GQ9BYE4 73 aa6.36□□□□□ -1.39
RTFDC1-201ENST00000023939 MT1FP04733 61 aa6.32□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP19-1Q8IUB9 90 aa6.3□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP9-2Q9BYQ4 174 aa6.3□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP25-1Q3LHN0 102 aa6.3□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.29□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP10-10P60014 251 aa6.28□□□□□ -1.4
RTFDC1-201ENST00000023939 KRTAP9-6A0A140TA67 174 aa6.26□□□□□ -1.41
RTFDC1-201ENST00000023939 KRTAP4-12Q9BQ66 201 aa6.25□□□□□ -1.41
RTFDC1-201ENST00000023939 CAMK2N1Q7Z7J9 78 aa6.22□□□□□ -1.41
RTFDC1-201ENST00000023939 C10orf95Q9H7T3 257 aa6.22□□□□□ -1.41
RTFDC1-201ENST00000023939 KRTAP19-8Q3LI54 63 aa6.17□□□□□ -1.42
RTFDC1-201ENST00000023939 PLAC4Q8WY50 150 aa6.14□□□□□ -1.43
RTFDC1-201ENST00000023939 KRTAP9-3Q9BYQ3 159 aa6.13□□□□□ -1.43
RTFDC1-201ENST00000023939 LCE3BQ5TA77 95 aa6.11□□□□□ -1.43
RTFDC1-201ENST00000023939 MT1BP07438 61 aa6.05□□□□□ -1.44
RTFDC1-201ENST00000023939 KRTAP9-9Q9BYP9 154 aa6□□□□□ -1.45
RTFDC1-201ENST00000023939 KRTAP9-4Q9BYQ2 154 aa6□□□□□ -1.45
RTFDC1-201ENST00000023939 TNP1P09430 55 aa5.98□□□□□ -1.45
RTFDC1-201ENST00000023939 PP632Q6XCG6 107 aa5.96□□□□□ -1.46
RTFDC1-201ENST00000023939 KRTAP23-1A1A580 65 aa5.93□□□□□ -1.46
RTFDC1-201ENST00000023939 FSIP2Q5CZC0 6907 aa5.92□□□□□ -1.46
RTFDC1-201ENST00000023939 CRCT1Q9UGL9 99 aa5.91□□□□□ -1.46
RTFDC1-201ENST00000023939 MT1XP80297 61 aa5.89□□□□□ -1.47
RTFDC1-201ENST00000023939 KRTAP10-5P60370 271 aa5.88□□□□□ -1.47
RTFDC1-201ENST00000023939 KRTAP19-4Q3LI73 84 aa5.86□□□□□ -1.47
RTFDC1-201ENST00000023939 KRTAP4-8A0A0G2JLE6 195 aa5.84□□□□□ -1.47
RTFDC1-201ENST00000023939 LCE4AQ5TA78 99 aa5.83□□□□□ -1.48
RTFDC1-201ENST00000023939 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
RTFDC1-201ENST00000023939 KRTAP9-7A8MTY7 169 aa5.74□□□□□ -1.49
RTFDC1-201ENST00000023939 A0A0A0MQY5 61 aa5.73□□□□□ -1.49
RTFDC1-201ENST00000023939 LCE1DQ5T752 114 aa5.72□□□□□ -1.49
RTFDC1-201ENST00000023939 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
RTFDC1-201ENST00000023939 KRTAP15-1Q3LI76 137 aa5.65□□□□□ -1.51
RTFDC1-201ENST00000023939 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
RTFDC1-201ENST00000023939 KRTAP10-12P60413 245 aa5.64□□□□□ -1.51
RTFDC1-201ENST00000023939 USH2AO75445 5202 aa5.63□□□□□ -1.51
RTFDC1-201ENST00000023939 KRTAP8-1Q8IUC2 63 aa5.62□□□□□ -1.51
RTFDC1-201ENST00000023939 KRTAP4-7Q9BYR0 210 aa5.62□□□□□ -1.51
RTFDC1-201ENST00000023939 KRTAP4-9Q9BYQ8 210 aa5.54□□□□□ -1.52
RTFDC1-201ENST00000023939 SSPOA2VEC9 5147 aa5.52□□□□□ -1.53
RTFDC1-201ENST00000023939 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms