RNA–Protein interactions for RNA: ENST00000636549.1

CACNA1A-227, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,792 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-227ENST00000636549 TRANK1O15050 2925 aa9.42□□□□□ -0.9
CACNA1A-227ENST00000636549 NOTCH1P46531 2555 aa9.38□□□□□ -0.91
CACNA1A-227ENST00000636549 MAP1AP78559 2803 aaPredicted RBP9.38□□□□□ -0.91
CACNA1A-227ENST00000636549 DMXL2Q8TDJ6 3036 aa9.37□□□□□ -0.91
CACNA1A-227ENST00000636549 ZNF292O60281 2723 aa9.36□□□□□ -0.91
CACNA1A-227ENST00000636549 LRBAP50851 2863 aa9.33□□□□□ -0.92
CACNA1A-227ENST00000636549 LAMA1P25391 3075 aa9.33□□□□□ -0.92
CACNA1A-227ENST00000636549 SPTBN5Q9NRC6 3674 aaKnown RBP9.33□□□□□ -0.92
CACNA1A-227ENST00000636549 USP34Q70CQ2 3546 aa9.32□□□□□ -0.92
CACNA1A-227ENST00000636549 ASPMQ8IZT6 3477 aa9.3□□□□□ -0.92
CACNA1A-227ENST00000636549 MYO15AQ9UKN7 3530 aa9.25□□□□□ -0.93
CACNA1A-227ENST00000636549 KMT2BQ9UMN6 2715 aaPredicted RBP9.23□□□□□ -0.93
CACNA1A-227ENST00000636549 BOD1L1Q8NFC6 3051 aa9.23□□□□□ -0.93
CACNA1A-227ENST00000636549 TACC2O95359 2948 aa9.23□□□□□ -0.93
CACNA1A-227ENST00000636549 APCP25054 2843 aa9.22□□□□□ -0.93
CACNA1A-227ENST00000636549 KRTAP21-3Q3LHN1 58 aa9.21□□□□□ -0.94
CACNA1A-227ENST00000636549 CRCT1Q9UGL9 99 aa9.2□□□□□ -0.94
CACNA1A-227ENST00000636549 ASH1LQ9NR48 2969 aaKnown RBP9.2□□□□□ -0.94
CACNA1A-227ENST00000636549 H0YAA0 97 aa9.19□□□□□ -0.94
CACNA1A-227ENST00000636549 IGSF10Q6WRI0 2623 aa9.19□□□□□ -0.94
CACNA1A-227ENST00000636549 ATMQ13315 3056 aa9.19□□□□□ -0.94
CACNA1A-227ENST00000636549 UBR5O95071 2799 aaPredicted RBP9.18□□□□□ -0.94
CACNA1A-227ENST00000636549 NSD1Q96L73 2696 aaPredicted RBP9.17□□□□□ -0.94
CACNA1A-227ENST00000636549 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
CACNA1A-227ENST00000636549 HIVEP1P15822 2718 aa9.16□□□□□ -0.94
CACNA1A-227ENST00000636549 PP632Q6XCG6 107 aa9.14□□□□□ -0.95
CACNA1A-227ENST00000636549 TPRXLQ17RH7 258 aa9.13□□□□□ -0.95
CACNA1A-227ENST00000636549 UTP20O75691 2785 aaKnown RBP9.12□□□□□ -0.95
CACNA1A-227ENST00000636549 NBEAQ8NFP9 2946 aa9.1□□□□□ -0.95
CACNA1A-227ENST00000636549 COL12A1Q99715 3063 aa9.1□□□□□ -0.95
CACNA1A-227ENST00000636549 FRYLO94915 3013 aa9.08□□□□□ -0.96
CACNA1A-227ENST00000636549 DCHS1Q96JQ0 3298 aa9.04□□□□□ -0.96
CACNA1A-227ENST00000636549 WDFY3Q8IZQ1 3526 aa9.04□□□□□ -0.96
CACNA1A-227ENST00000636549 NBPF19A0A087WUL8 3843 aa9.04□□□□□ -0.96
CACNA1A-227ENST00000636549 EYSQ5T1H1 3165 aa9.03□□□□□ -0.96
CACNA1A-227ENST00000636549 LOC400499M0QZD8 3231 aa9.01□□□□□ -0.97
CACNA1A-227ENST00000636549 ITPR1Q14643 2758 aa9.01□□□□□ -0.97
CACNA1A-227ENST00000636549 KRTAP13-3Q3SY46 172 aa9□□□□□ -0.97
CACNA1A-227ENST00000636549 KRTAP12-2P59991 146 aa9□□□□□ -0.97
CACNA1A-227ENST00000636549 ADGRG4Q8IZF6 3080 aa8.97□□□□□ -0.97
CACNA1A-227ENST00000636549 ZFHX4Q86UP3 3567 aa8.88□□□□□ -0.99
CACNA1A-227ENST00000636549 ZZEF1O43149 2961 aa8.88□□□□□ -0.99
CACNA1A-227ENST00000636549 KRTAP15-1Q3LI76 137 aa8.82□□□□□ -1
CACNA1A-227ENST00000636549 TENM4Q6N022 2769 aa8.8□□□□□ -1
CACNA1A-227ENST00000636549 CELSR2Q9HCU4 2923 aa8.79□□□□□ -1
CACNA1A-227ENST00000636549 LAMA5O15230 3695 aa8.77□□□□□ -1
CACNA1A-227ENST00000636549 CSMD1Q96PZ7 3565 aa8.72□□□□□ -1.01
CACNA1A-227ENST00000636549 TENM2Q9NT68 2774 aa8.68□□□□□ -1.02
CACNA1A-227ENST00000636549 DMXL1Q9Y485 3027 aa8.67□□□□□ -1.02
CACNA1A-227ENST00000636549 DCHS2Q6V1P9 2916 aa8.65□□□□□ -1.03
CACNA1A-227ENST00000636549 TNRC18O15417 2968 aaPredicted RBP8.64□□□□□ -1.03
CACNA1A-227ENST00000636549 TENM1Q9UKZ4 2725 aa8.62□□□□□ -1.03
CACNA1A-227ENST00000636549 FLNCQ14315 2725 aa8.59□□□□□ -1.03
CACNA1A-227ENST00000636549 RELNP78509 3460 aa8.58□□□□□ -1.04
CACNA1A-227ENST00000636549 CELSR1Q9NYQ6 3014 aa8.57□□□□□ -1.04
CACNA1A-227ENST00000636549 KRTAP13-4Q3LI77 160 aa8.52□□□□□ -1.05
CACNA1A-227ENST00000636549 KRTAP12-1P59990 96 aa8.44□□□□□ -1.06
CACNA1A-227ENST00000636549 NF1P21359 2839 aa8.38□□□□□ -1.07
CACNA1A-227ENST00000636549 FBN2P35556 2912 aa8.37□□□□□ -1.07
CACNA1A-227ENST00000636549 SPENQ96T58 3664 aaKnown RBP8.36□□□□□ -1.07
CACNA1A-227ENST00000636549 SMG1Q96Q15 3661 aaKnown RBP8.35□□□□□ -1.07
CACNA1A-227ENST00000636549 TGP01266 2768 aa8.34□□□□□ -1.07
CACNA1A-227ENST00000636549 PKD1L1Q8TDX9 2849 aa8.32□□□□□ -1.08
CACNA1A-227ENST00000636549 VWFP04275 2813 aa8.31□□□□□ -1.08
CACNA1A-227ENST00000636549 ZANQ9Y493 2812 aa8.27□□□□□ -1.09
CACNA1A-227ENST00000636549 HRNRQ86YZ3 2850 aaPredicted RBP8.26□□□□□ -1.09
CACNA1A-227ENST00000636549 ZFHX3Q15911 3703 aa8.25□□□□□ -1.09
CACNA1A-227ENST00000636549 TENM3Q9P273 2699 aa8.24□□□□□ -1.09
CACNA1A-227ENST00000636549 LORP23490 312 aaPredicted RBP8.23□□□□□ -1.09
CACNA1A-227ENST00000636549 MUC3AQ02505 3323 aa8.22□□□□□ -1.09
CACNA1A-227ENST00000636549 DMDP11532 3685 aa8.22□□□□□ -1.09
CACNA1A-227ENST00000636549 NIPBLQ6KC79 2804 aaeCLIP8.22□□□□□ -1.09
CACNA1A-227ENST00000636549 CUBNO60494 3623 aa8.19□□□□□ -1.1
CACNA1A-227ENST00000636549 KRTAP4-5Q9BYR2 181 aa8.17□□□□□ -1.1
CACNA1A-227ENST00000636549 KRTAP10-12P60413 245 aa8.17□□□□□ -1.1
CACNA1A-227ENST00000636549 SVEP1Q4LDE5 3571 aa8.16□□□□□ -1.1
CACNA1A-227ENST00000636549 KRTAP3-1Q9BYR8 98 aa8.16□□□□□ -1.1
CACNA1A-227ENST00000636549 PDZD2O15018 2839 aa8.09□□□□□ -1.11
CACNA1A-227ENST00000636549 CSMD2Q7Z408 3487 aa8.03□□□□□ -1.12
CACNA1A-227ENST00000636549 KRTAP10-5P60370 271 aa8.02□□□□□ -1.13
CACNA1A-227ENST00000636549 MXRA5Q9NR99 2828 aa8□□□□□ -1.13
CACNA1A-227ENST00000636549 ANK3Q12955 4377 aaKnown RBP7.93□□□□□ -1.14
CACNA1A-227ENST00000636549 KRTAP10-6P60371 365 aaPredicted RBP7.9□□□□□ -1.14
CACNA1A-227ENST00000636549 LCE3AQ5TA76 89 aa7.88□□□□□ -1.15
CACNA1A-227ENST00000636549 KRTAP8-1Q8IUC2 63 aa7.84□□□□□ -1.15
CACNA1A-227ENST00000636549 CSMD3Q7Z407 3707 aa7.83□□□□□ -1.16
CACNA1A-227ENST00000636549 MT1HL1P0DM35 61 aa7.83□□□□□ -1.16
CACNA1A-227ENST00000636549 KRTAP12-3P60328 96 aa7.8□□□□□ -1.16
CACNA1A-227ENST00000636549 TRRAPQ9Y4A5 3859 aa7.74□□□□□ -1.17
CACNA1A-227ENST00000636549 VPS13CQ709C8 3753 aa7.72□□□□□ -1.17
CACNA1A-227ENST00000636549 HUWE1Q7Z6Z7 4374 aaKnown RBP7.71□□□□□ -1.17
CACNA1A-227ENST00000636549 FBN1P35555 2871 aaKnown RBP7.64□□□□□ -1.19
CACNA1A-227ENST00000636549 MEGF8Q7Z7M0 2845 aa7.63□□□□□ -1.19
CACNA1A-227ENST00000636549 INE1O15225 51 aa7.63□□□□□ -1.19
CACNA1A-227ENST00000636549 SRRM2Q9UQ35 2752 aaKnown RBP7.62□□□□□ -1.19
CACNA1A-227ENST00000636549 BSNQ9UPA5 3926 aa7.6□□□□□ -1.19
CACNA1A-227ENST00000636549 FBN3Q75N90 2809 aa7.57□□□□□ -1.2
CACNA1A-227ENST00000636549 KRTAP3-3Q9BYR6 98 aa7.55□□□□□ -1.2
CACNA1A-227ENST00000636549 COL7A1Q02388 2944 aa7.55□□□□□ -1.2
CACNA1A-227ENST00000636549 ALMS1Q8TCU4 4167 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms