RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 H0YAA0 97 aa8.29□□□□□ -1.08
PDLIM2-220ENST00000622226 ASH1LQ9NR48 2969 aaKnown RBP8.29□□□□□ -1.08
PDLIM2-220ENST00000622226 Q6ZRN7 208 aaPredicted RBP8.26□□□□□ -1.09
PDLIM2-220ENST00000622226 EYSQ5T1H1 3165 aa8.26□□□□□ -1.09
PDLIM2-220ENST00000622226 TRANK1O15050 2925 aa8.26□□□□□ -1.09
PDLIM2-220ENST00000622226 PP632Q6XCG6 107 aa8.25□□□□□ -1.09
PDLIM2-220ENST00000622226 KRTAP13-1Q8IUC0 172 aa8.25□□□□□ -1.09
PDLIM2-220ENST00000622226 USP34Q70CQ2 3546 aa8.22□□□□□ -1.09
PDLIM2-220ENST00000622226 IGSF10Q6WRI0 2623 aa8.22□□□□□ -1.09
PDLIM2-220ENST00000622226 KMT2BQ9UMN6 2715 aaPredicted RBP8.2□□□□□ -1.1
PDLIM2-220ENST00000622226 LAMA1P25391 3075 aa8.2□□□□□ -1.1
PDLIM2-220ENST00000622226 APCP25054 2843 aa8.15□□□□□ -1.1
PDLIM2-220ENST00000622226 ITPR1Q14643 2758 aa8.14□□□□□ -1.11
PDLIM2-220ENST00000622226 UBR5O95071 2799 aaPredicted RBP8.13□□□□□ -1.11
PDLIM2-220ENST00000622226 ITPR2Q14571 2701 aa8.13□□□□□ -1.11
PDLIM2-220ENST00000622226 BOD1L1Q8NFC6 3051 aa8.09□□□□□ -1.11
PDLIM2-220ENST00000622226 KRTAP21-3Q3LHN1 58 aa8.09□□□□□ -1.11
PDLIM2-220ENST00000622226 MYO15AQ9UKN7 3530 aa8.08□□□□□ -1.12
PDLIM2-220ENST00000622226 ZNF292O60281 2723 aa8.07□□□□□ -1.12
PDLIM2-220ENST00000622226 ASPMQ8IZT6 3477 aa8.06□□□□□ -1.12
PDLIM2-220ENST00000622226 LRBAP50851 2863 aa8.04□□□□□ -1.12
PDLIM2-220ENST00000622226 FRYLO94915 3013 aa8.04□□□□□ -1.12
PDLIM2-220ENST00000622226 ATMQ13315 3056 aa8.04□□□□□ -1.12
PDLIM2-220ENST00000622226 TACC2O95359 2948 aa8.03□□□□□ -1.12
PDLIM2-220ENST00000622226 COL12A1Q99715 3063 aa8.03□□□□□ -1.12
PDLIM2-220ENST00000622226 UTP20O75691 2785 aaKnown RBP8.03□□□□□ -1.12
PDLIM2-220ENST00000622226 HIVEP1P15822 2718 aa8□□□□□ -1.13
PDLIM2-220ENST00000622226 KRTAP10-10P60014 251 aa7.99□□□□□ -1.13
PDLIM2-220ENST00000622226 NBEAQ8NFP9 2946 aa7.98□□□□□ -1.13
PDLIM2-220ENST00000622226 NBPF19A0A087WUL8 3843 aa7.96□□□□□ -1.14
PDLIM2-220ENST00000622226 XP32Q5T750 250 aa7.95□□□□□ -1.14
PDLIM2-220ENST00000622226 TNRC18O15417 2968 aaPredicted RBP7.92□□□□□ -1.14
PDLIM2-220ENST00000622226 WDFY3Q8IZQ1 3526 aa7.86□□□□□ -1.15
PDLIM2-220ENST00000622226 ADGRG4Q8IZF6 3080 aa7.82□□□□□ -1.16
PDLIM2-220ENST00000622226 KRTAP1-4P0C5Y4 121 aa7.81□□□□□ -1.16
PDLIM2-220ENST00000622226 DMXL1Q9Y485 3027 aa7.79□□□□□ -1.16
PDLIM2-220ENST00000622226 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
PDLIM2-220ENST00000622226 CELSR2Q9HCU4 2923 aa7.77□□□□□ -1.17
PDLIM2-220ENST00000622226 PRO2289Q9P1D8 64 aa7.74□□□□□ -1.17
PDLIM2-220ENST00000622226 ZZEF1O43149 2961 aa7.72□□□□□ -1.17
PDLIM2-220ENST00000622226 LOC400499M0QZD8 3231 aa7.72□□□□□ -1.17
PDLIM2-220ENST00000622226 TENM4Q6N022 2769 aa7.7□□□□□ -1.18
PDLIM2-220ENST00000622226 TPRXLQ17RH7 258 aa7.68□□□□□ -1.18
PDLIM2-220ENST00000622226 RELNP78509 3460 aa7.64□□□□□ -1.19
PDLIM2-220ENST00000622226 TGP01266 2768 aa7.62□□□□□ -1.19
PDLIM2-220ENST00000622226 DCHS1Q96JQ0 3298 aa7.6□□□□□ -1.19
PDLIM2-220ENST00000622226 FLNCQ14315 2725 aa7.59□□□□□ -1.19
PDLIM2-220ENST00000622226 DCHS2Q6V1P9 2916 aa7.58□□□□□ -1.2
PDLIM2-220ENST00000622226 LAMA5O15230 3695 aa7.57□□□□□ -1.2
PDLIM2-220ENST00000622226 ZFHX4Q86UP3 3567 aa7.55□□□□□ -1.2
PDLIM2-220ENST00000622226 KRTAP13-4Q3LI77 160 aa7.55□□□□□ -1.2
PDLIM2-220ENST00000622226 TENM2Q9NT68 2774 aa7.54□□□□□ -1.2
PDLIM2-220ENST00000622226 KRTAP13-3Q3SY46 172 aa7.53□□□□□ -1.2
PDLIM2-220ENST00000622226 KRTAP12-1P59990 96 aa7.53□□□□□ -1.2
PDLIM2-220ENST00000622226 CELSR1Q9NYQ6 3014 aa7.47□□□□□ -1.21
PDLIM2-220ENST00000622226 TENM3Q9P273 2699 aa7.45□□□□□ -1.22
PDLIM2-220ENST00000622226 NF1P21359 2839 aa7.45□□□□□ -1.22
PDLIM2-220ENST00000622226 KRTAP15-1Q3LI76 137 aa7.45□□□□□ -1.22
PDLIM2-220ENST00000622226 TENM1Q9UKZ4 2725 aa7.45□□□□□ -1.22
PDLIM2-220ENST00000622226 ZFHX3Q15911 3703 aa7.44□□□□□ -1.22
PDLIM2-220ENST00000622226 DMDP11532 3685 aa7.41□□□□□ -1.22
PDLIM2-220ENST00000622226 CSMD1Q96PZ7 3565 aa7.41□□□□□ -1.22
PDLIM2-220ENST00000622226 NIPBLQ6KC79 2804 aaeCLIP7.39□□□□□ -1.23
PDLIM2-220ENST00000622226 PDZD2O15018 2839 aa7.34□□□□□ -1.23
PDLIM2-220ENST00000622226 FBN2P35556 2912 aa7.34□□□□□ -1.23
PDLIM2-220ENST00000622226 PKD1L1Q8TDX9 2849 aa7.27□□□□□ -1.25
PDLIM2-220ENST00000622226 ZANQ9Y493 2812 aa7.27□□□□□ -1.25
PDLIM2-220ENST00000622226 KRTAP3-1Q9BYR8 98 aa7.26□□□□□ -1.25
PDLIM2-220ENST00000622226 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
PDLIM2-220ENST00000622226 SPENQ96T58 3664 aaKnown RBP7.22□□□□□ -1.25
PDLIM2-220ENST00000622226 VWFP04275 2813 aa7.21□□□□□ -1.25
PDLIM2-220ENST00000622226 INE1O15225 51 aa7.2□□□□□ -1.26
PDLIM2-220ENST00000622226 CSMD2Q7Z408 3487 aa7.2□□□□□ -1.26
PDLIM2-220ENST00000622226 SMG1Q96Q15 3661 aaKnown RBP7.17□□□□□ -1.26
PDLIM2-220ENST00000622226 KRTAP10-6P60371 365 aaPredicted RBP7.12□□□□□ -1.27
PDLIM2-220ENST00000622226 HRNRQ86YZ3 2850 aaPredicted RBP7.11□□□□□ -1.27
PDLIM2-220ENST00000622226 SVEP1Q4LDE5 3571 aa7.09□□□□□ -1.27
PDLIM2-220ENST00000622226 KRTAP4-5Q9BYR2 181 aa7.09□□□□□ -1.28
PDLIM2-220ENST00000622226 CUBNO60494 3623 aa7.07□□□□□ -1.28
PDLIM2-220ENST00000622226 MUC3AQ02505 3323 aa7□□□□□ -1.29
PDLIM2-220ENST00000622226 MXRA5Q9NR99 2828 aa6.98□□□□□ -1.29
PDLIM2-220ENST00000622226 SRRM2Q9UQ35 2752 aaKnown RBP6.94□□□□□ -1.3
PDLIM2-220ENST00000622226 ANK3Q12955 4377 aaKnown RBP6.94□□□□□ -1.3
PDLIM2-220ENST00000622226 KRTAP10-12P60413 245 aa6.86□□□□□ -1.31
PDLIM2-220ENST00000622226 LORP23490 312 aaPredicted RBP6.85□□□□□ -1.31
PDLIM2-220ENST00000622226 TRRAPQ9Y4A5 3859 aa6.8□□□□□ -1.32
PDLIM2-220ENST00000622226 FBN1P35555 2871 aaKnown RBP6.79□□□□□ -1.32
PDLIM2-220ENST00000622226 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
PDLIM2-220ENST00000622226 MEGF8Q7Z7M0 2845 aa6.75□□□□□ -1.33
PDLIM2-220ENST00000622226 KRTAP3-3Q9BYR6 98 aa6.72□□□□□ -1.33
PDLIM2-220ENST00000622226 KRTAP12-3P60328 96 aa6.72□□□□□ -1.33
PDLIM2-220ENST00000622226 BSNQ9UPA5 3926 aa6.72□□□□□ -1.33
PDLIM2-220ENST00000622226 FBN3Q75N90 2809 aa6.71□□□□□ -1.34
PDLIM2-220ENST00000622226 COL7A1Q02388 2944 aa6.69□□□□□ -1.34
PDLIM2-220ENST00000622226 LCE3AQ5TA76 89 aa6.68□□□□□ -1.34
PDLIM2-220ENST00000622226 VPS13CQ709C8 3753 aa6.67□□□□□ -1.34
PDLIM2-220ENST00000622226 KRTAP10-5P60370 271 aa6.67□□□□□ -1.34
PDLIM2-220ENST00000622226 HUWE1Q7Z6Z7 4374 aaKnown RBP6.66□□□□□ -1.34
PDLIM2-220ENST00000622226 MT1HL1P0DM35 61 aa6.64□□□□□ -1.35
PDLIM2-220ENST00000622226 CSMD3Q7Z407 3707 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms