RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 OXTP01178 125 aa8.07□□□□□ -1.12
USP39-220ENST00000613444 SCGB1A1P11684 91 aa8.05□□□□□ -1.12
USP39-220ENST00000613444 FAM236AA0A1B0GUQ0 79 aa8.04□□□□□ -1.12
USP39-220ENST00000613444 FAM236BA0A1B0GV22 79 aa8.04□□□□□ -1.12
USP39-220ENST00000613444 A0A1B0GVX0 72 aa8.04□□□□□ -1.12
USP39-220ENST00000613444 KRTAP29-1A8MX34 341 aaPredicted RBP8.03□□□□□ -1.12
USP39-220ENST00000613444 NDUFB1O75438 58 aa8.03□□□□□ -1.12
USP39-220ENST00000613444 NOTCH2NLQ7Z3S9 236 aa8□□□□□ -1.13
USP39-220ENST00000613444 IGHV6-1A0A0B4J1U7 121 aa8□□□□□ -1.13
USP39-220ENST00000613444 MMP24-AS1A0A0U1RRL7 71 aa8□□□□□ -1.13
USP39-220ENST00000613444 HCG22E2RYF7 251 aa8□□□□□ -1.13
USP39-220ENST00000613444 RETNLBQ9BQ08 111 aa7.98□□□□□ -1.13
USP39-220ENST00000613444 C8orf17Q9NRJ1 99 aa7.98□□□□□ -1.13
USP39-220ENST00000613444 WFDC13Q8IUB5 93 aa7.95□□□□□ -1.14
USP39-220ENST00000613444 PCLOQ9Y6V0 5065 aa7.95□□□□□ -1.14
USP39-220ENST00000613444 CASC2Q6XLA1 102 aa7.94□□□□□ -1.14
USP39-220ENST00000613444 hDV103S1A0JD37 113 aa7.93□□□□□ -1.14
USP39-220ENST00000613444 C8orf87E5RJ46 101 aa7.93□□□□□ -1.14
USP39-220ENST00000613444 ATOX1O00244 68 aa7.92□□□□□ -1.14
USP39-220ENST00000613444 LINC00313P59037 77 aa7.91□□□□□ -1.14
USP39-220ENST00000613444 KRTAP16-1A8MUX0 517 aa7.9□□□□□ -1.15
USP39-220ENST00000613444 TMEM254Q8TBM7 123 aa7.88□□□□□ -1.15
USP39-220ENST00000613444 OCR1Q9BZK8 76 aa7.88□□□□□ -1.15
USP39-220ENST00000613444 FP248Q71RG6 208 aaPredicted RBP7.88□□□□□ -1.15
USP39-220ENST00000613444 MRPL34Q9BQ48 92 aaKnown RBP7.87□□□□□ -1.15
USP39-220ENST00000613444 ANAPC13Q9BS18 74 aa7.87□□□□□ -1.15
USP39-220ENST00000613444 J3QL48 77 aa7.86□□□□□ -1.15
USP39-220ENST00000613444 TRAV7A0A075B6U4 112 aa7.83□□□□□ -1.16
USP39-220ENST00000613444 SMIM20Q8N5G0 67 aa7.83□□□□□ -1.16
USP39-220ENST00000613444 SERP2Q8N6R1 65 aa7.83□□□□□ -1.16
USP39-220ENST00000613444 Q8N9P0 234 aaPredicted RBP7.83□□□□□ -1.16
USP39-220ENST00000613444 C9orf92A6NGG3 77 aa7.82□□□□□ -1.16
USP39-220ENST00000613444 IGLV7-46A0A075B6I9 117 aa7.81□□□□□ -1.16
USP39-220ENST00000613444 COX7CP15954 63 aa7.79□□□□□ -1.16
USP39-220ENST00000613444 KRTAP13-3Q3SY46 172 aa7.78□□□□□ -1.16
USP39-220ENST00000613444 NDUFS5O43920 106 aa7.77□□□□□ -1.17
USP39-220ENST00000613444 PRR4Q16378 134 aa7.77□□□□□ -1.17
USP39-220ENST00000613444 UQCRQO14949 82 aa7.76□□□□□ -1.17
USP39-220ENST00000613444 TP53AIP1Q9HCN2 124 aa7.76□□□□□ -1.17
USP39-220ENST00000613444 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
USP39-220ENST00000613444 LPAP08519 4548 aa7.74□□□□□ -1.17
USP39-220ENST00000613444 A8MUU9 505 aa7.74□□□□□ -1.17
USP39-220ENST00000613444 CCDC179H3BU77 68 aa7.74□□□□□ -1.17
USP39-220ENST00000613444 HERC1Q15751 4861 aa7.74□□□□□ -1.17
USP39-220ENST00000613444 Q5W150 140 aa7.73□□□□□ -1.17
USP39-220ENST00000613444 C5orf47Q569G3 176 aa7.71□□□□□ -1.17
USP39-220ENST00000613444 TPRXLQ17RH7 258 aa7.71□□□□□ -1.18
USP39-220ENST00000613444 TRAV22A0A0B4J277 110 aa7.7□□□□□ -1.18
USP39-220ENST00000613444 XP32Q5T750 250 aa7.7□□□□□ -1.18
USP39-220ENST00000613444 Q75L30 129 aa7.69□□□□□ -1.18
USP39-220ENST00000613444 C20orf197Q8N268 126 aa7.69□□□□□ -1.18
USP39-220ENST00000613444 LRP2P98164 4655 aa7.68□□□□□ -1.18
USP39-220ENST00000613444 H0Y9P7 68 aa7.68□□□□□ -1.18
USP39-220ENST00000613444 A0A0U1RQV1 116 aa7.67□□□□□ -1.18
USP39-220ENST00000613444 CYSTM1Q9H1C7 97 aa7.66□□□□□ -1.18
USP39-220ENST00000613444 KLKP1Q107X0 134 aa7.65□□□□□ -1.18
USP39-220ENST00000613444 ZCCHC13Q8WW36 166 aaKnown RBP7.65□□□□□ -1.18
USP39-220ENST00000613444 SNURFQ9Y675 71 aa7.65□□□□□ -1.18
USP39-220ENST00000613444 MP68P56378 58 aa7.64□□□□□ -1.19
USP39-220ENST00000613444 RPL37P61927 97 aaKnown RBP7.63□□□□□ -1.19
USP39-220ENST00000613444 LINC00208Q96KT6 92 aa7.63□□□□□ -1.19
USP39-220ENST00000613444 H3BPC8 53 aa7.62□□□□□ -1.19
USP39-220ENST00000613444 HMCN2Q8NDA2 5059 aa7.62□□□□□ -1.19
USP39-220ENST00000613444 C1orf64Q8NEQ6 169 aa7.6□□□□□ -1.19
USP39-220ENST00000613444 LOC101927531A0A1B0GV80 90 aa7.56□□□□□ -1.2
USP39-220ENST00000613444 IGKV2-30P06310 120 aa7.56□□□□□ -1.2
USP39-220ENST00000613444 H7BZZ5 65 aa7.55□□□□□ -1.2
USP39-220ENST00000613444 CYP4F30PQ9H0H9 118 aa7.54□□□□□ -1.2
USP39-220ENST00000613444 ATP11AUNQ6ZP68 121 aa7.54□□□□□ -1.2
USP39-220ENST00000613444 NDUFC1O43677 76 aa7.51□□□□□ -1.21
USP39-220ENST00000613444 IGKV2D-30A0A075B6S6 120 aa7.5□□□□□ -1.21
USP39-220ENST00000613444 SEC61GP60059 68 aa7.49□□□□□ -1.21
USP39-220ENST00000613444 PCOTHQ58A44 107 aa7.49□□□□□ -1.21
USP39-220ENST00000613444 MUC17Q685J3 4493 aa7.48□□□□□ -1.21
USP39-220ENST00000613444 C7orf65Q6ZTY9 151 aa7.47□□□□□ -1.21
USP39-220ENST00000613444 SPINK7P58062 85 aa7.46□□□□□ -1.21
USP39-220ENST00000613444 TMEM258P61165 79 aa7.42□□□□□ -1.22
USP39-220ENST00000613444 HRES1P13985 223 aa7.42□□□□□ -1.22
USP39-220ENST00000613444 SEC61BP60468 96 aaKnown RBP7.41□□□□□ -1.22
USP39-220ENST00000613444 SPANXA2-OT1Q8N9U9 137 aa7.4□□□□□ -1.23
USP39-220ENST00000613444 FAM236DA0A1B0GTK5 79 aa7.36□□□□□ -1.23
USP39-220ENST00000613444 FAM236CP0DP71 79 aa7.36□□□□□ -1.23
USP39-220ENST00000613444 KRTAP4-1Q9BYQ7 146 aa7.35□□□□□ -1.23
USP39-220ENST00000613444 C4orf26Q17RF5 130 aa7.33□□□□□ -1.24
USP39-220ENST00000613444 ATP5EP56381 51 aaPredicted RBP7.32□□□□□ -1.24
USP39-220ENST00000613444 MUC2Q02817 5179 aa7.29□□□□□ -1.24
USP39-220ENST00000613444 MPLKIPQ8TAP9 179 aa7.29□□□□□ -1.24
USP39-220ENST00000613444 DMAC1Q96GE9 116 aa7.29□□□□□ -1.24
USP39-220ENST00000613444 KRTAP3-1Q9BYR8 98 aa7.29□□□□□ -1.24
USP39-220ENST00000613444 UBR4Q5T4S7 5183 aa7.28□□□□□ -1.24
USP39-220ENST00000613444 COX6B2Q6YFQ2 88 aa7.25□□□□□ -1.25
USP39-220ENST00000613444 V9GYY9 64 aa7.25□□□□□ -1.25
USP39-220ENST00000613444 RNF213Q63HN8 5207 aa7.22□□□□□ -1.25
USP39-220ENST00000613444 A8MUN3 132 aa7.21□□□□□ -1.26
USP39-220ENST00000613444 ACYP2P14621 99 aa7.2□□□□□ -1.26
USP39-220ENST00000613444 SERP1Q9Y6X1 66 aa7.19□□□□□ -1.26
USP39-220ENST00000613444 COA5Q86WW8 74 aa7.17□□□□□ -1.26
USP39-220ENST00000613444 KRTAP19-2Q3LHN2 52 aa7.16□□□□□ -1.26
USP39-220ENST00000613444 RBM12B-AS1Q9P1G2 102 aa7.16□□□□□ -1.26
USP39-220ENST00000613444 RPS28P62857 69 aaKnown RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms