RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 IGHV6-1A0A0B4J1U7 121 aa10.19□□□□□ -0.78
VRK3-225ENST00000601912 HCG22E2RYF7 251 aa10.18□□□□□ -0.78
VRK3-225ENST00000601912 KRTAP29-1A8MX34 341 aaPredicted RBP10.17□□□□□ -0.78
VRK3-225ENST00000601912 MYCBP2O75592 4640 aa10.15□□□□□ -0.79
VRK3-225ENST00000601912 HERC2O95714 4834 aa10.14□□□□□ -0.79
VRK3-225ENST00000601912 C8orf17Q9NRJ1 99 aa10.14□□□□□ -0.79
VRK3-225ENST00000601912 WFDC13Q8IUB5 93 aa10.13□□□□□ -0.79
VRK3-225ENST00000601912 DMBT1Q9UGM3 2413 aaPredicted RBP10.13□□□□□ -0.79
VRK3-225ENST00000601912 C8orf87E5RJ46 101 aa10.12□□□□□ -0.79
VRK3-225ENST00000601912 ATOX1O00244 68 aa10.12□□□□□ -0.79
VRK3-225ENST00000601912 CASC2Q6XLA1 102 aa10.12□□□□□ -0.79
VRK3-225ENST00000601912 MMP24-AS1A0A0U1RRL7 71 aa10.12□□□□□ -0.79
VRK3-225ENST00000601912 RETNLBQ9BQ08 111 aa10.11□□□□□ -0.79
VRK3-225ENST00000601912 hDV103S1A0JD37 113 aa10.1□□□□□ -0.79
VRK3-225ENST00000601912 LINC00313P59037 77 aa10.09□□□□□ -0.79
VRK3-225ENST00000601912 NOTCH2NLQ7Z3S9 236 aa10.07□□□□□ -0.8
VRK3-225ENST00000601912 ANAPC13Q9BS18 74 aa10.06□□□□□ -0.8
VRK3-225ENST00000601912 J3QL48 77 aa10.06□□□□□ -0.8
VRK3-225ENST00000601912 SMIM20Q8N5G0 67 aa10.06□□□□□ -0.8
VRK3-225ENST00000601912 FP248Q71RG6 208 aaPredicted RBP10.04□□□□□ -0.8
VRK3-225ENST00000601912 TMEM254Q8TBM7 123 aa10.04□□□□□ -0.8
VRK3-225ENST00000601912 MRPL34Q9BQ48 92 aaKnown RBP10.02□□□□□ -0.8
VRK3-225ENST00000601912 ABCA13Q86UQ4 5058 aa10.02□□□□□ -0.81
VRK3-225ENST00000601912 SERP2Q8N6R1 65 aa9.99□□□□□ -0.81
VRK3-225ENST00000601912 TRAV7A0A075B6U4 112 aa9.98□□□□□ -0.81
VRK3-225ENST00000601912 PCP4P48539 62 aa9.98□□□□□ -0.81
VRK3-225ENST00000601912 OCR1Q9BZK8 76 aa9.98□□□□□ -0.81
VRK3-225ENST00000601912 NDUFS5O43920 106 aa9.96□□□□□ -0.81
VRK3-225ENST00000601912 IGLV7-46A0A075B6I9 117 aa9.96□□□□□ -0.82
VRK3-225ENST00000601912 C9orf92A6NGG3 77 aa9.93□□□□□ -0.82
VRK3-225ENST00000601912 KRTAP16-1A8MUX0 517 aa9.93□□□□□ -0.82
VRK3-225ENST00000601912 TP53AIP1Q9HCN2 124 aa9.93□□□□□ -0.82
VRK3-225ENST00000601912 COX7CP15954 63 aa9.92□□□□□ -0.82
VRK3-225ENST00000601912 PRR4Q16378 134 aa9.92□□□□□ -0.82
VRK3-225ENST00000601912 UQCRQO14949 82 aa9.91□□□□□ -0.82
VRK3-225ENST00000601912 Q8N9P0 234 aaPredicted RBP9.91□□□□□ -0.82
VRK3-225ENST00000601912 C5orf47Q569G3 176 aa9.87□□□□□ -0.83
VRK3-225ENST00000601912 KRTAP13-3Q3SY46 172 aa9.83□□□□□ -0.84
VRK3-225ENST00000601912 MP68P56378 58 aa9.82□□□□□ -0.84
VRK3-225ENST00000601912 TRAV22A0A0B4J277 110 aa9.81□□□□□ -0.84
VRK3-225ENST00000601912 C20orf166-AS1Q96NR2 134 aa9.81□□□□□ -0.84
VRK3-225ENST00000601912 CCDC179H3BU77 68 aa9.8□□□□□ -0.84
VRK3-225ENST00000601912 A8MUU9 505 aa9.8□□□□□ -0.84
VRK3-225ENST00000601912 H0Y9P7 68 aa9.8□□□□□ -0.84
VRK3-225ENST00000601912 C20orf197Q8N268 126 aa9.79□□□□□ -0.84
VRK3-225ENST00000601912 TPRXLQ17RH7 258 aa9.78□□□□□ -0.84
VRK3-225ENST00000601912 Q75L30 129 aa9.76□□□□□ -0.85
VRK3-225ENST00000601912 H3BPC8 53 aa9.75□□□□□ -0.85
VRK3-225ENST00000601912 PCLOQ9Y6V0 5065 aa9.75□□□□□ -0.85
VRK3-225ENST00000601912 Q5W150 140 aa9.74□□□□□ -0.85
VRK3-225ENST00000601912 XP32Q5T750 250 aa9.73□□□□□ -0.85
VRK3-225ENST00000601912 LINC00208Q96KT6 92 aa9.73□□□□□ -0.85
VRK3-225ENST00000601912 SNURFQ9Y675 71 aa9.73□□□□□ -0.85
VRK3-225ENST00000601912 A0A0U1RQV1 116 aa9.72□□□□□ -0.85
VRK3-225ENST00000601912 KLKP1Q107X0 134 aa9.72□□□□□ -0.85
VRK3-225ENST00000601912 ZCCHC13Q8WW36 166 aaKnown RBP9.72□□□□□ -0.85
VRK3-225ENST00000601912 C1orf64Q8NEQ6 169 aa9.71□□□□□ -0.86
VRK3-225ENST00000601912 RPL37P61927 97 aaKnown RBP9.67□□□□□ -0.86
VRK3-225ENST00000601912 ATP11AUNQ6ZP68 121 aa9.66□□□□□ -0.86
VRK3-225ENST00000601912 LOC101927531A0A1B0GV80 90 aa9.65□□□□□ -0.86
VRK3-225ENST00000601912 NDUFC1O43677 76 aa9.64□□□□□ -0.87
VRK3-225ENST00000601912 CYSTM1Q9H1C7 97 aa9.61□□□□□ -0.87
VRK3-225ENST00000601912 IGKV2-30P06310 120 aa9.58□□□□□ -0.88
VRK3-225ENST00000601912 CYP4F30PQ9H0H9 118 aa9.58□□□□□ -0.88
VRK3-225ENST00000601912 IGKV2D-30A0A075B6S6 120 aa9.57□□□□□ -0.88
VRK3-225ENST00000601912 H7BZZ5 65 aa9.56□□□□□ -0.88
VRK3-225ENST00000601912 C7orf65Q6ZTY9 151 aa9.55□□□□□ -0.88
VRK3-225ENST00000601912 PCOTHQ58A44 107 aa9.53□□□□□ -0.88
VRK3-225ENST00000601912 LPAP08519 4548 aa9.51□□□□□ -0.89
VRK3-225ENST00000601912 SPINK7P58062 85 aa9.48□□□□□ -0.89
VRK3-225ENST00000601912 TMEM258P61165 79 aa9.48□□□□□ -0.89
VRK3-225ENST00000601912 HERC1Q15751 4861 aa9.48□□□□□ -0.89
VRK3-225ENST00000601912 SEC61BP60468 96 aaKnown RBP9.48□□□□□ -0.89
VRK3-225ENST00000601912 LRP2P98164 4655 aa9.44□□□□□ -0.9
VRK3-225ENST00000601912 SPANXA2-OT1Q8N9U9 137 aa9.43□□□□□ -0.9
VRK3-225ENST00000601912 HRES1P13985 223 aa9.42□□□□□ -0.9
VRK3-225ENST00000601912 FAM236DA0A1B0GTK5 79 aa9.41□□□□□ -0.9
VRK3-225ENST00000601912 FAM236CP0DP71 79 aa9.41□□□□□ -0.9
VRK3-225ENST00000601912 ATP5EP56381 51 aaPredicted RBP9.39□□□□□ -0.91
VRK3-225ENST00000601912 HMCN2Q8NDA2 5059 aa9.36□□□□□ -0.91
VRK3-225ENST00000601912 C4orf26Q17RF5 130 aa9.32□□□□□ -0.92
VRK3-225ENST00000601912 DMAC1Q96GE9 116 aa9.26□□□□□ -0.93
VRK3-225ENST00000601912 A8MUN3 132 aa9.23□□□□□ -0.93
VRK3-225ENST00000601912 ACYP2P14621 99 aa9.23□□□□□ -0.93
VRK3-225ENST00000601912 COX6B2Q6YFQ2 88 aa9.23□□□□□ -0.93
VRK3-225ENST00000601912 MUC17Q685J3 4493 aa9.2□□□□□ -0.94
VRK3-225ENST00000601912 RBM12B-AS1Q9P1G2 102 aa9.19□□□□□ -0.94
VRK3-225ENST00000601912 SERP1Q9Y6X1 66 aa9.19□□□□□ -0.94
VRK3-225ENST00000601912 KRTAP4-1Q9BYQ7 146 aa9.18□□□□□ -0.94
VRK3-225ENST00000601912 MPLKIPQ8TAP9 179 aa9.16□□□□□ -0.94
VRK3-225ENST00000601912 KRTAP3-1Q9BYR8 98 aa9.15□□□□□ -0.94
VRK3-225ENST00000601912 COA5Q86WW8 74 aa9.13□□□□□ -0.95
VRK3-225ENST00000601912 RPS28P62857 69 aaKnown RBP9.12□□□□□ -0.95
VRK3-225ENST00000601912 CHKB-CPT1BH3BT56 60 aa9.09□□□□□ -0.95
VRK3-225ENST00000601912 H1FX-AS1Q4G0G2 97 aa9.04□□□□□ -0.96
VRK3-225ENST00000601912 S4R3F8 94 aa8.96□□□□□ -0.98
VRK3-225ENST00000601912 SPTSSBQ8NFR3 76 aa8.94□□□□□ -0.98
VRK3-225ENST00000601912 SMIM26A0A096LP01 95 aa8.94□□□□□ -0.98
VRK3-225ENST00000601912 UBR4Q5T4S7 5183 aa8.93□□□□□ -0.98
VRK3-225ENST00000601912 MUC2Q02817 5179 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms