RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 DMBT1Q9UGM3 2413 aaPredicted RBP13.67□□□□□ -0.22
ATPAF1-213ENST00000574428 LINC00472Q9H8W2 130 aa13.66□□□□□ -0.22
ATPAF1-213ENST00000574428 C1orf195Q5TG92 126 aa13.64□□□□□ -0.23
ATPAF1-213ENST00000574428 DSCR10P59022 87 aa13.63□□□□□ -0.23
ATPAF1-213ENST00000574428 RETNLBQ9BQ08 111 aa13.62□□□□□ -0.23
ATPAF1-213ENST00000574428 CCDC179H3BU77 68 aa13.57□□□□□ -0.24
ATPAF1-213ENST00000574428 K7EQZ3 153 aa13.56□□□□□ -0.24
ATPAF1-213ENST00000574428 J3KT08 172 aa13.52□□□□□ -0.25
ATPAF1-213ENST00000574428 SERP2Q8N6R1 65 aa13.51□□□□□ -0.25
ATPAF1-213ENST00000574428 COX7CP15954 63 aa13.5□□□□□ -0.25
ATPAF1-213ENST00000574428 UQCRQO14949 82 aa13.48□□□□□ -0.25
ATPAF1-213ENST00000574428 A8MWP4 228 aa13.45□□□□□ -0.26
ATPAF1-213ENST00000574428 SMIM20Q8N5G0 67 aa13.42□□□□□ -0.26
ATPAF1-213ENST00000574428 TRAV7A0A075B6U4 112 aa13.41□□□□□ -0.26
ATPAF1-213ENST00000574428 PRR15Q8IV56 129 aa13.4□□□□□ -0.26
ATPAF1-213ENST00000574428 IGHV6-1A0A0B4J1U7 121 aa13.4□□□□□ -0.26
ATPAF1-213ENST00000574428 HCG22E2RYF7 251 aa13.4□□□□□ -0.26
ATPAF1-213ENST00000574428 NDUFB1O75438 58 aa13.4□□□□□ -0.26
ATPAF1-213ENST00000574428 A0A1B0GVX0 72 aa13.39□□□□□ -0.27
ATPAF1-213ENST00000574428 PRR4Q16378 134 aa13.39□□□□□ -0.27
ATPAF1-213ENST00000574428 FP248Q71RG6 208 aaPredicted RBP13.39□□□□□ -0.27
ATPAF1-213ENST00000574428 IGLV7-46A0A075B6I9 117 aa13.35□□□□□ -0.27
ATPAF1-213ENST00000574428 OCR1Q9BZK8 76 aa13.33□□□□□ -0.28
ATPAF1-213ENST00000574428 NOTCH2NLQ7Z3S9 236 aa13.32□□□□□ -0.28
ATPAF1-213ENST00000574428 WFDC13Q8IUB5 93 aa13.32□□□□□ -0.28
ATPAF1-213ENST00000574428 C9orf92A6NGG3 77 aa13.28□□□□□ -0.28
ATPAF1-213ENST00000574428 C8orf17Q9NRJ1 99 aa13.27□□□□□ -0.28
ATPAF1-213ENST00000574428 MMP24-AS1A0A0U1RRL7 71 aa13.27□□□□□ -0.29
ATPAF1-213ENST00000574428 CASC2Q6XLA1 102 aa13.27□□□□□ -0.29
ATPAF1-213ENST00000574428 LINC00313P59037 77 aa13.26□□□□□ -0.29
ATPAF1-213ENST00000574428 CYSTM1Q9H1C7 97 aa13.25□□□□□ -0.29
ATPAF1-213ENST00000574428 HERC1Q15751 4861 aa13.25□□□□□ -0.29
ATPAF1-213ENST00000574428 C8orf87E5RJ46 101 aa13.25□□□□□ -0.29
ATPAF1-213ENST00000574428 C20orf197Q8N268 126 aa13.25□□□□□ -0.29
ATPAF1-213ENST00000574428 KRTAP13-3Q3SY46 172 aa13.21□□□□□ -0.29
ATPAF1-213ENST00000574428 hDV103S1A0JD37 113 aa13.17□□□□□ -0.3
ATPAF1-213ENST00000574428 KRTAP16-1A8MUX0 517 aa13.15□□□□□ -0.3
ATPAF1-213ENST00000574428 TPRXLQ17RH7 258 aa13.15□□□□□ -0.3
ATPAF1-213ENST00000574428 KLKP1Q107X0 134 aa13.15□□□□□ -0.31
ATPAF1-213ENST00000574428 SNURFQ9Y675 71 aa13.15□□□□□ -0.31
ATPAF1-213ENST00000574428 TMEM254Q8TBM7 123 aa13.14□□□□□ -0.31
ATPAF1-213ENST00000574428 MRPL34Q9BQ48 92 aaKnown RBP13.09□□□□□ -0.31
ATPAF1-213ENST00000574428 A0A0U1RQV1 116 aa13.08□□□□□ -0.32
ATPAF1-213ENST00000574428 XP32Q5T750 250 aa13.07□□□□□ -0.32
ATPAF1-213ENST00000574428 LPAP08519 4548 aa13.06□□□□□ -0.32
ATPAF1-213ENST00000574428 C5orf47Q569G3 176 aa13.04□□□□□ -0.32
ATPAF1-213ENST00000574428 HMCN2Q8NDA2 5059 aa13.03□□□□□ -0.32
ATPAF1-213ENST00000574428 H7BZZ5 65 aa13.02□□□□□ -0.33
ATPAF1-213ENST00000574428 NDUFS5O43920 106 aa13.01□□□□□ -0.33
ATPAF1-213ENST00000574428 Q8N9P0 234 aaPredicted RBP13.01□□□□□ -0.33
ATPAF1-213ENST00000574428 TMEM258P61165 79 aa13□□□□□ -0.33
ATPAF1-213ENST00000574428 C20orf166-AS1Q96NR2 134 aa12.99□□□□□ -0.33
ATPAF1-213ENST00000574428 A8MUU9 505 aa12.98□□□□□ -0.33
ATPAF1-213ENST00000574428 NDUFC1O43677 76 aa12.96□□□□□ -0.34
ATPAF1-213ENST00000574428 H0Y9P7 68 aa12.95□□□□□ -0.34
ATPAF1-213ENST00000574428 ZCCHC13Q8WW36 166 aaKnown RBP12.95□□□□□ -0.34
ATPAF1-213ENST00000574428 TP53AIP1Q9HCN2 124 aa12.95□□□□□ -0.34
ATPAF1-213ENST00000574428 MP68P56378 58 aa12.94□□□□□ -0.34
ATPAF1-213ENST00000574428 Q75L30 129 aa12.94□□□□□ -0.34
ATPAF1-213ENST00000574428 TRAV22A0A0B4J277 110 aa12.92□□□□□ -0.34
ATPAF1-213ENST00000574428 RPL37P61927 97 aaKnown RBP12.92□□□□□ -0.34
ATPAF1-213ENST00000574428 LRP2P98164 4655 aa12.89□□□□□ -0.35
ATPAF1-213ENST00000574428 LINC00208Q96KT6 92 aa12.89□□□□□ -0.35
ATPAF1-213ENST00000574428 H3BPC8 53 aa12.86□□□□□ -0.35
ATPAF1-213ENST00000574428 FAM236DA0A1B0GTK5 79 aa12.84□□□□□ -0.35
ATPAF1-213ENST00000574428 FAM236CP0DP71 79 aa12.84□□□□□ -0.35
ATPAF1-213ENST00000574428 C1orf64Q8NEQ6 169 aa12.81□□□□□ -0.36
ATPAF1-213ENST00000574428 Q5W150 140 aa12.81□□□□□ -0.36
ATPAF1-213ENST00000574428 ATP11AUNQ6ZP68 121 aa12.8□□□□□ -0.36
ATPAF1-213ENST00000574428 PCOTHQ58A44 107 aa12.76□□□□□ -0.37
ATPAF1-213ENST00000574428 ATP5EP56381 51 aaPredicted RBP12.73□□□□□ -0.37
ATPAF1-213ENST00000574428 SEC61BP60468 96 aaKnown RBP12.71□□□□□ -0.38
ATPAF1-213ENST00000574428 RPS28P62857 69 aaKnown RBP12.64□□□□□ -0.39
ATPAF1-213ENST00000574428 LOC101927531A0A1B0GV80 90 aa12.62□□□□□ -0.39
ATPAF1-213ENST00000574428 SERP1Q9Y6X1 66 aa12.6□□□□□ -0.39
ATPAF1-213ENST00000574428 MUC17Q685J3 4493 aa12.59□□□□□ -0.39
ATPAF1-213ENST00000574428 IGKV2D-30A0A075B6S6 120 aa12.58□□□□□ -0.4
ATPAF1-213ENST00000574428 IGKV2-30P06310 120 aa12.58□□□□□ -0.4
ATPAF1-213ENST00000574428 SPANXA2-OT1Q8N9U9 137 aa12.57□□□□□ -0.4
ATPAF1-213ENST00000574428 CYP4F30PQ9H0H9 118 aa12.54□□□□□ -0.4
ATPAF1-213ENST00000574428 UBR4Q5T4S7 5183 aa12.54□□□□□ -0.4
ATPAF1-213ENST00000574428 SPINK7P58062 85 aa12.53□□□□□ -0.4
ATPAF1-213ENST00000574428 KRTAP4-1Q9BYQ7 146 aa12.51□□□□□ -0.41
ATPAF1-213ENST00000574428 C7orf65Q6ZTY9 151 aa12.51□□□□□ -0.41
ATPAF1-213ENST00000574428 HRES1P13985 223 aa12.36□□□□□ -0.43
ATPAF1-213ENST00000574428 RNF213Q63HN8 5207 aa12.35□□□□□ -0.43
ATPAF1-213ENST00000574428 MUC2Q02817 5179 aa12.34□□□□□ -0.43
ATPAF1-213ENST00000574428 SMIM26A0A096LP01 95 aa12.28□□□□□ -0.44
ATPAF1-213ENST00000574428 C4orf26Q17RF5 130 aa12.27□□□□□ -0.45
ATPAF1-213ENST00000574428 COA5Q86WW8 74 aa12.25□□□□□ -0.45
ATPAF1-213ENST00000574428 MPLKIPQ8TAP9 179 aa12.23□□□□□ -0.45
ATPAF1-213ENST00000574428 DMAC1Q96GE9 116 aa12.2□□□□□ -0.46
ATPAF1-213ENST00000574428 RBM12B-AS1Q9P1G2 102 aa12.18□□□□□ -0.46
ATPAF1-213ENST00000574428 ACYP2P14621 99 aa12.13□□□□□ -0.47
ATPAF1-213ENST00000574428 COX6B2Q6YFQ2 88 aa12.13□□□□□ -0.47
ATPAF1-213ENST00000574428 KRTAP3-1Q9BYR8 98 aa12.09□□□□□ -0.47
ATPAF1-213ENST00000574428 KRTAP19-2Q3LHN2 52 aa12.08□□□□□ -0.48
ATPAF1-213ENST00000574428 Q1T7F1 81 aa12.01□□□□□ -0.49
ATPAF1-213ENST00000574428 A8MUN3 132 aa11.97□□□□□ -0.49
ATPAF1-213ENST00000574428 CHKB-CPT1BH3BT56 60 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms