RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 ZZEF1O43149 2961 aa6.56□□□□□ -1.36
SYNE2-208ENST00000553289 UTP20O75691 2785 aaKnown RBP6.56□□□□□ -1.36
SYNE2-208ENST00000553289 PLAC4Q8WY50 150 aa6.56□□□□□ -1.36
SYNE2-208ENST00000553289 USP34Q70CQ2 3546 aa6.55□□□□□ -1.36
SYNE2-208ENST00000553289 DMBT1Q9UGM3 2413 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-208ENST00000553289 ITPR2Q14571 2701 aa6.54□□□□□ -1.36
SYNE2-208ENST00000553289 NBEAL2Q6ZNJ1 2754 aa6.54□□□□□ -1.36
SYNE2-208ENST00000553289 LOC400499M0QZD8 3231 aa6.53□□□□□ -1.36
SYNE2-208ENST00000553289 KRTAP13-2Q52LG2 175 aa6.51□□□□□ -1.37
SYNE2-208ENST00000553289 A6NN06 94 aa6.51□□□□□ -1.37
SYNE2-208ENST00000553289 MYO15AQ9UKN7 3530 aa6.49□□□□□ -1.37
SYNE2-208ENST00000553289 APCP25054 2843 aa6.49□□□□□ -1.37
SYNE2-208ENST00000553289 NSD1Q96L73 2696 aaPredicted RBP6.46□□□□□ -1.38
SYNE2-208ENST00000553289 KRTAP25-1Q3LHN0 102 aa6.46□□□□□ -1.38
SYNE2-208ENST00000553289 HIVEP1P15822 2718 aa6.45□□□□□ -1.38
SYNE2-208ENST00000553289 CFAP47Q6ZTR5 3102 aa6.44□□□□□ -1.38
SYNE2-208ENST00000553289 ZANQ9Y493 2812 aa6.44□□□□□ -1.38
SYNE2-208ENST00000553289 A8MUU9 505 aa6.44□□□□□ -1.38
SYNE2-208ENST00000553289 HRNRQ86YZ3 2850 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-208ENST00000553289 KMT2BQ9UMN6 2715 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-208ENST00000553289 A8MU10 97 aa6.4□□□□□ -1.38
SYNE2-208ENST00000553289 STAB2Q8WWQ8 2551 aa6.4□□□□□ -1.39
SYNE2-208ENST00000553289 KRTAP21-3Q3LHN1 58 aa6.39□□□□□ -1.39
SYNE2-208ENST00000553289 C20orf166-AS1Q96NR2 134 aa6.37□□□□□ -1.39
SYNE2-208ENST00000553289 NIPBLQ6KC79 2804 aaeCLIP6.32□□□□□ -1.4
SYNE2-208ENST00000553289 KRTAP16-1A8MUX0 517 aa6.29□□□□□ -1.4
SYNE2-208ENST00000553289 CRYBG3Q68DQ2 2970 aa6.29□□□□□ -1.4
SYNE2-208ENST00000553289 CELSR2Q9HCU4 2923 aa6.28□□□□□ -1.4
SYNE2-208ENST00000553289 MUC3AQ02505 3323 aa6.27□□□□□ -1.41
SYNE2-208ENST00000553289 ASH1LQ9NR48 2969 aaKnown RBP6.27□□□□□ -1.41
SYNE2-208ENST00000553289 NF1P21359 2839 aa6.25□□□□□ -1.41
SYNE2-208ENST00000553289 TNP1P09430 55 aa6.25□□□□□ -1.41
SYNE2-208ENST00000553289 RELNP78509 3460 aa6.23□□□□□ -1.41
SYNE2-208ENST00000553289 DCHS2Q6V1P9 2916 aa6.22□□□□□ -1.41
SYNE2-208ENST00000553289 FBN2P35556 2912 aa6.22□□□□□ -1.41
SYNE2-208ENST00000553289 KRTAP1-4P0C5Y4 121 aa6.22□□□□□ -1.41
SYNE2-208ENST00000553289 DMDP11532 3685 aa6.2□□□□□ -1.42
SYNE2-208ENST00000553289 LAMA5O15230 3695 aa6.19□□□□□ -1.42
SYNE2-208ENST00000553289 WDFY3Q8IZQ1 3526 aa6.19□□□□□ -1.42
SYNE2-208ENST00000553289 PP632Q6XCG6 107 aa6.17□□□□□ -1.42
SYNE2-208ENST00000553289 MXRA5Q9NR99 2828 aa6.17□□□□□ -1.42
SYNE2-208ENST00000553289 XP32Q5T750 250 aa6.15□□□□□ -1.42
SYNE2-208ENST00000553289 NDUFAF8A1L188 74 aa6.15□□□□□ -1.42
SYNE2-208ENST00000553289 TENM4Q6N022 2769 aa6.15□□□□□ -1.43
SYNE2-208ENST00000553289 DCHS1Q96JQ0 3298 aa6.12□□□□□ -1.43
SYNE2-208ENST00000553289 ASPMQ8IZT6 3477 aa6.11□□□□□ -1.43
SYNE2-208ENST00000553289 TPRXLQ17RH7 258 aa6.09□□□□□ -1.44
SYNE2-208ENST00000553289 ZFHX4Q86UP3 3567 aa6.07□□□□□ -1.44
SYNE2-208ENST00000553289 H0YAA0 97 aa6.05□□□□□ -1.44
SYNE2-208ENST00000553289 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
SYNE2-208ENST00000553289 PDZD2O15018 2839 aa6.01□□□□□ -1.45
SYNE2-208ENST00000553289 KRTAP10-8P60410 259 aa5.97□□□□□ -1.45
SYNE2-208ENST00000553289 KRTAP13-3Q3SY46 172 aa5.97□□□□□ -1.45
SYNE2-208ENST00000553289 P0C880 135 aa5.96□□□□□ -1.46
SYNE2-208ENST00000553289 CELSR1Q9NYQ6 3014 aa5.93□□□□□ -1.46
SYNE2-208ENST00000553289 TENM3Q9P273 2699 aa5.92□□□□□ -1.46
SYNE2-208ENST00000553289 SMG1Q96Q15 3661 aaKnown RBP5.91□□□□□ -1.46
SYNE2-208ENST00000553289 TENM1Q9UKZ4 2725 aa5.91□□□□□ -1.46
SYNE2-208ENST00000553289 A0A1B0GVY2 172 aa5.89□□□□□ -1.47
SYNE2-208ENST00000553289 OTOGQ6ZRI0 2925 aa5.88□□□□□ -1.47
SYNE2-208ENST00000553289 PRO2289Q9P1D8 64 aa5.86□□□□□ -1.47
SYNE2-208ENST00000553289 NBPF19A0A087WUL8 3843 aa5.84□□□□□ -1.47
SYNE2-208ENST00000553289 KRTAP10-10P60014 251 aa5.83□□□□□ -1.48
SYNE2-208ENST00000553289 CSMD1Q96PZ7 3565 aa5.82□□□□□ -1.48
SYNE2-208ENST00000553289 VWFP04275 2813 aa5.8□□□□□ -1.48
SYNE2-208ENST00000553289 SPENQ96T58 3664 aaKnown RBP5.79□□□□□ -1.48
SYNE2-208ENST00000553289 BSNQ9UPA5 3926 aa5.77□□□□□ -1.49
SYNE2-208ENST00000553289 FBN1P35555 2871 aaKnown RBP5.75□□□□□ -1.49
SYNE2-208ENST00000553289 SVEP1Q4LDE5 3571 aa5.75□□□□□ -1.49
SYNE2-208ENST00000553289 TENM2Q9NT68 2774 aa5.72□□□□□ -1.49
SYNE2-208ENST00000553289 ANK3Q12955 4377 aaKnown RBP5.71□□□□□ -1.5
SYNE2-208ENST00000553289 ZFHX3Q15911 3703 aa5.7□□□□□ -1.5
SYNE2-208ENST00000553289 TGP01266 2768 aa5.69□□□□□ -1.5
SYNE2-208ENST00000553289 PKD1L1Q8TDX9 2849 aa5.67□□□□□ -1.5
SYNE2-208ENST00000553289 KRTAP12-2P59991 146 aa5.66□□□□□ -1.5
SYNE2-208ENST00000553289 CSMD2Q7Z408 3487 aa5.66□□□□□ -1.5
SYNE2-208ENST00000553289 KRTAP13-4Q3LI77 160 aa5.65□□□□□ -1.51
SYNE2-208ENST00000553289 KRTAP12-1P59990 96 aa5.61□□□□□ -1.51
SYNE2-208ENST00000553289 KRTAP3-1Q9BYR8 98 aa5.57□□□□□ -1.52
SYNE2-208ENST00000553289 TRRAPQ9Y4A5 3859 aa5.54□□□□□ -1.52
SYNE2-208ENST00000553289 CUBNO60494 3623 aa5.53□□□□□ -1.52
SYNE2-208ENST00000553289 KRTAP10-6P60371 365 aaPredicted RBP5.45□□□□□ -1.54
SYNE2-208ENST00000553289 VPS13CQ709C8 3753 aa5.35□□□□□ -1.55
SYNE2-208ENST00000553289 FBN3Q75N90 2809 aa5.34□□□□□ -1.55
SYNE2-208ENST00000553289 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.56
SYNE2-208ENST00000553289 MEGF8Q7Z7M0 2845 aa5.32□□□□□ -1.56
SYNE2-208ENST00000553289 ZNF469Q96JG9 3925 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-208ENST00000553289 MT1HL1P0DM35 61 aa5.29□□□□□ -1.56
SYNE2-208ENST00000553289 HUWE1Q7Z6Z7 4374 aaKnown RBP5.28□□□□□ -1.56
SYNE2-208ENST00000553289 KRTAP3-2Q9BYR7 98 aa5.25□□□□□ -1.57
SYNE2-208ENST00000553289 AKAP9Q99996 3911 aa5.25□□□□□ -1.57
SYNE2-208ENST00000553289 SRRM2Q9UQ35 2752 aaKnown RBP5.23□□□□□ -1.57
SYNE2-208ENST00000553289 KRTAP3-3Q9BYR6 98 aa5.23□□□□□ -1.57
SYNE2-208ENST00000553289 COL7A1Q02388 2944 aa5.18□□□□□ -1.58
SYNE2-208ENST00000553289 KRTAP10-4P60372 401 aaPredicted RBP5.17□□□□□ -1.58
SYNE2-208ENST00000553289 INE1O15225 51 aa5.16□□□□□ -1.58
SYNE2-208ENST00000553289 KRTAP23-1A1A580 65 aa5.13□□□□□ -1.59
SYNE2-208ENST00000553289 KRTAP10-12P60413 245 aa5.13□□□□□ -1.59
SYNE2-208ENST00000553289 DNAH9Q9NYC9 4486 aa5.11□□□□□ -1.59
SYNE2-208ENST00000553289 KRTAP12-3P60328 96 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms