RNA–Protein interactions for RNA: ENST00000549876.5

CCDC38-208, Transcript of coiled-coil domain containing 38, humanhuman

TSL 5

Gene CCDC38, Length 499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-208ENST00000549876 SPRR2AP35326 72 aa0.14□□□□□ -2.39
CCDC38-208ENST00000549876 TNRC18O15417 2968 aaPredicted RBP0.13□□□□□ -2.39
CCDC38-208ENST00000549876 IGLV5-48A0A075B6I7 105 aa0.13□□□□□ -2.39
CCDC38-208ENST00000549876 CEP290O15078 2479 aa0.13□□□□□ -2.39
CCDC38-208ENST00000549876 COL7A1Q02388 2944 aa0.13□□□□□ -2.39
CCDC38-208ENST00000549876 KIF21BO75037 1637 aa0.13□□□□□ -2.39
CCDC38-208ENST00000549876 PKHD1P08F94 4074 aa0.12□□□□□ -2.39
CCDC38-208ENST00000549876 SMIM27A0A1W2PRY6 76 aa0.12□□□□□ -2.39
CCDC38-208ENST00000549876 H3BNG1 76 aa0.12□□□□□ -2.39
CCDC38-208ENST00000549876 PKD1L2Q7Z442 2459 aa0.12□□□□□ -2.39
CCDC38-208ENST00000549876 FLNAP21333 2647 aaKnown RBP0.12□□□□□ -2.39
CCDC38-208ENST00000549876 FLNCQ14315 2725 aa0.11□□□□□ -2.39
CCDC38-208ENST00000549876 DDX60Q8IY21 1712 aaKnown RBP0.11□□□□□ -2.39
CCDC38-208ENST00000549876 LINC01546A6NGU7 62 aa0.11□□□□□ -2.39
CCDC38-208ENST00000549876 LRP2P98164 4655 aa0.11□□□□□ -2.39
CCDC38-208ENST00000549876 PKHD1L1Q86WI1 4243 aa0.11□□□□□ -2.39
CCDC38-208ENST00000549876 VPS13BQ7Z7G8 4022 aa0.1□□□□□ -2.39
CCDC38-208ENST00000549876 SACSQ9NZJ4 4579 aa0.1□□□□□ -2.39
CCDC38-208ENST00000549876 SPTBN4Q9H254 2564 aa0.1□□□□□ -2.39
CCDC38-208ENST00000549876 FAM208AQ9UK61 1670 aaKnown RBP0.1□□□□□ -2.39
CCDC38-208ENST00000549876 COL6A3P12111 3177 aa0.1□□□□□ -2.39
CCDC38-208ENST00000549876 NSD1Q96L73 2696 aaPredicted RBP0.1□□□□□ -2.39
CCDC38-208ENST00000549876 FLGP20930 4061 aaPredicted RBP0.09□□□□□ -2.39
CCDC38-208ENST00000549876 MMP24-AS1A0A0U1RRL7 71 aa0.09□□□□□ -2.4
CCDC38-208ENST00000549876 DNAH3Q8TD57 4116 aa0.09□□□□□ -2.4
CCDC38-208ENST00000549876 DNAH9Q9NYC9 4486 aa0.09□□□□□ -2.4
CCDC38-208ENST00000549876 ANK3Q12955 4377 aaKnown RBP0.08□□□□□ -2.4
CCDC38-208ENST00000549876 IQGAP1P46940 1657 aa0.08□□□□□ -2.4
CCDC38-208ENST00000549876 NF1P21359 2839 aa0.08□□□□□ -2.4
CCDC38-208ENST00000549876 SPRR2GQ9BYE4 73 aa0.08□□□□□ -2.4
CCDC38-208ENST00000549876 SONP18583 2426 aaKnown RBP0.08□□□□□ -2.4
CCDC38-208ENST00000549876 GPR98Q8WXG9 6306 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 IQGAP2Q13576 1575 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 ZANQ9Y493 2812 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 DSTQ03001 7570 aaKnown RBP0.07□□□□□ -2.4
CCDC38-208ENST00000549876 A8MTW9 85 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 MT1AP04731 61 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 SPRR2EP22531 72 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 KRTAP6-2Q3LI66 62 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 KAAG1Q9UBP8 84 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 SPG11Q96JI7 2443 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 MTORP42345 2549 aa0.07□□□□□ -2.4
CCDC38-208ENST00000549876 ZZEF1O43149 2961 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 MACF1Q9UPN3 7388 aaKnown RBP0.06□□□□□ -2.4
CCDC38-208ENST00000549876 DNAH2Q9P225 4427 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 M0QY20 66 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 DEFB131AP59861 70 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 SMIM2Q9BVW6 85 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 FAT3Q8TDW7 4589 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 TENM2Q9NT68 2774 aa0.06□□□□□ -2.4
CCDC38-208ENST00000549876 SETD2Q9BYW2 2564 aaPredicted RBP0.05□□□□□ -2.4
CCDC38-208ENST00000549876 ABCA13Q86UQ4 5058 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 MUC2Q02817 5179 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 TRPM2O94759 1503 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 TNP1P09430 55 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 WFDC10BQ8IUB3 73 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 HYDINQ4G0P3 5121 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 USH2AO75445 5202 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 RYR2Q92736 4967 aa0.05□□□□□ -2.4
CCDC38-208ENST00000549876 SSPOA2VEC9 5147 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 PCLOQ9Y6V0 5065 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 M0QZ58 72 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 BIRC6Q9NR09 4857 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 FSIP2Q5CZC0 6907 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 FAM186AA6NE01 2351 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 RNF213Q63HN8 5207 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 RYR1P21817 5038 aa0.04□□□□□ -2.4
CCDC38-208ENST00000549876 EPPK1P58107 5090 aaKnown RBP0.04□□□□□ -2.4
CCDC38-208ENST00000549876 HERC1Q15751 4861 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 SVEP1Q4LDE5 3571 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 TFF3Q07654 80 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 DEFB110Q30KQ9 67 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 STAB1Q9NY15 2570 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 VPS13DQ5THJ4 4388 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 A0A0C4DFX4 3053 aa0.03□□□□□ -2.4
CCDC38-208ENST00000549876 ACACAQ13085 2346 aa0.03□□□□□ -2.41
CCDC38-208ENST00000549876 CUBNO60494 3623 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 SYNE2Q8WXH0 6885 aaKnown RBP0.02□□□□□ -2.41
CCDC38-208ENST00000549876 DYNC2H1Q8NCM8 4307 aaKnown RBP0.02□□□□□ -2.41
CCDC38-208ENST00000549876 CLTCL1P53675 1640 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 TGP01266 2768 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 AKAP9Q99996 3911 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 APOBP04114 4563 aaKnown RBP0.02□□□□□ -2.41
CCDC38-208ENST00000549876 UBR4Q5T4S7 5183 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 TOMM5Q8N4H5 51 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 SPRR2FQ96RM1 72 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 LAMA3Q16787 3333 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 GCN1Q92616 2671 aaKnown RBP0.02□□□□□ -2.41
CCDC38-208ENST00000549876 KMT2CQ8NEZ4 4911 aaKnown RBP0.02□□□□□ -2.41
CCDC38-208ENST00000549876 MUC17Q685J3 4493 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 HERC2O95714 4834 aa0.02□□□□□ -2.41
CCDC38-208ENST00000549876 STAB2Q8WWQ8 2551 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 PDZD2O15018 2839 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 DMXL1Q9Y485 3027 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 COL12A1Q99715 3063 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 STARD9Q9P2P6 4700 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 ANKRD11Q6UB99 2663 aaPredicted RBP0.01□□□□□ -2.41
CCDC38-208ENST00000549876 MUC12Q9UKN1 5478 aa0.01□□□□□ -2.41
CCDC38-208ENST00000549876 SRRM2Q9UQ35 2752 aaKnown RBP0.01□□□□□ -2.41
CCDC38-208ENST00000549876 DNAH11Q96DT5 4516 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms