RNA–Protein interactions for RNA: ENST00000549876.5

CCDC38-208, Transcript of coiled-coil domain containing 38, humanhuman

TSL 5

Gene CCDC38, Length 499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-208ENST00000549876 AEBP2Q6ZN18 517 aaPredicted RBP31.84■■■□□ 2.69
CCDC38-208ENST00000549876 CHIC1Q5VXU3 224 aa30.27■■■□□ 2.44
CCDC38-208ENST00000549876 SENP3Q9H4L4 574 aaPredicted RBP27.1■■□□□ 1.93
CCDC38-208ENST00000549876 PHF23Q9BUL5 403 aaPredicted RBP26.78■■□□□ 1.88
CCDC38-208ENST00000549876 FOXD1Q16676 465 aa25.29■■□□□ 1.64
CCDC38-208ENST00000549876 PLPPR3Q6T4P5 718 aa24.18■■□□□ 1.46
CCDC38-208ENST00000549876 PPP6R1Q9UPN7 881 aa23.7■■□□□ 1.38
CCDC38-208ENST00000549876 MSH5O43196 834 aa23.61■■□□□ 1.37
CCDC38-208ENST00000549876 ADRA2BP18089 450 aa23.6■■□□□ 1.37
CCDC38-208ENST00000549876 PIAS4Q8N2W9 510 aaPredicted RBP23.6■■□□□ 1.37
CCDC38-208ENST00000549876 POTEDQ86YR6 584 aa22.98■■□□□ 1.27
CCDC38-208ENST00000549876 MAPK8IP2Q13387 824 aaPredicted RBP21.67■■□□□ 1.06
CCDC38-208ENST00000549876 SCAF1Q9H7N4 1312 aaKnown RBP21.55■■□□□ 1.04
CCDC38-208ENST00000549876 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
CCDC38-208ENST00000549876 PPP4R3CPQ6ZMV5 832 aa21.21■□□□□ 0.99
CCDC38-208ENST00000549876 CNKSR2Q8WXI2 1034 aa20.8■□□□□ 0.92
CCDC38-208ENST00000549876 HOXD11P31277 338 aaPredicted RBP20.77■□□□□ 0.92
CCDC38-208ENST00000549876 RNF216Q9NWF9 866 aaPredicted RBP20.61■□□□□ 0.89
CCDC38-208ENST00000549876 DCAF8L1A6NGE4 600 aa20.55■□□□□ 0.88
CCDC38-208ENST00000549876 NCBP3Q53F19 620 aaKnown RBP20.38■□□□□ 0.85
CCDC38-208ENST00000549876 CACNB1Q02641 598 aaPredicted RBP20.21■□□□□ 0.83
CCDC38-208ENST00000549876 RNF39Q9H2S5 420 aa20.18■□□□□ 0.82
CCDC38-208ENST00000549876 NPM3O75607 178 aaKnown RBP20.13■□□□□ 0.81
CCDC38-208ENST00000549876 DNAJC5BQ9UF47 199 aa20.06■□□□□ 0.8
CCDC38-208ENST00000549876 C1QBPQ07021 282 aaKnown RBP19.87■□□□□ 0.77
CCDC38-208ENST00000549876 KCNA4P22459 653 aa19.78■□□□□ 0.76
CCDC38-208ENST00000549876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.72■□□□□ 0.75
CCDC38-208ENST00000549876 U3KPZ7 1027 aaPredicted RBP19.36■□□□□ 0.69
CCDC38-208ENST00000549876 SLC4A2P04920 1241 aa19.23■□□□□ 0.67
CCDC38-208ENST00000549876 SPINK5Q9NQ38 1064 aaPredicted RBP19.06■□□□□ 0.64
CCDC38-208ENST00000549876 CAPN15O75808 1086 aa18.98■□□□□ 0.63
CCDC38-208ENST00000549876 DSG3P32926 999 aa18.92■□□□□ 0.62
CCDC38-208ENST00000549876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
CCDC38-208ENST00000549876 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
CCDC38-208ENST00000549876 APLP2Q06481 763 aa18.77■□□□□ 0.6
CCDC38-208ENST00000549876 SAMD1Q6SPF0 538 aaPredicted RBP18.69■□□□□ 0.58
CCDC38-208ENST00000549876 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
CCDC38-208ENST00000549876 ZNF219Q9P2Y4 722 aaPredicted RBP18.67■□□□□ 0.58
CCDC38-208ENST00000549876 SLC4A1APQ9BWU0 796 aaKnown RBP18.66■□□□□ 0.58
CCDC38-208ENST00000549876 MYCNP04198 464 aaPredicted RBP18.59■□□□□ 0.57
CCDC38-208ENST00000549876 ABCB7O75027 752 aa18.55■□□□□ 0.56
CCDC38-208ENST00000549876 FOXD4L1Q9NU39 408 aa18.43■□□□□ 0.54
CCDC38-208ENST00000549876 POLA2Q14181 598 aa18.22■□□□□ 0.51
CCDC38-208ENST00000549876 ZBTB22O15209 634 aa18.21■□□□□ 0.51
CCDC38-208ENST00000549876 ATF5Q9Y2D1 282 aaPredicted RBP18.2■□□□□ 0.5
CCDC38-208ENST00000549876 POTEHQ6S545 545 aa18.01■□□□□ 0.47
CCDC38-208ENST00000549876 RBM42Q9BTD8 480 aaKnown RBP18■□□□□ 0.47
CCDC38-208ENST00000549876 ATXN8OSP0DMR3 200 aa17.88■□□□□ 0.45
CCDC38-208ENST00000549876 ZBTB12Q9Y330 459 aaPredicted RBP17.85■□□□□ 0.45
CCDC38-208ENST00000549876 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
CCDC38-208ENST00000549876 AKT1S1Q96B36 256 aa17.63■□□□□ 0.41
CCDC38-208ENST00000549876 CHRDL2Q6WN34 429 aa17.6■□□□□ 0.41
CCDC38-208ENST00000549876 REM2Q8IYK8 340 aaPredicted RBP17.47■□□□□ 0.39
CCDC38-208ENST00000549876 FBLN2P98095 1184 aa17.42■□□□□ 0.38
CCDC38-208ENST00000549876 CSRNP3Q8WYN3 585 aa17.42■□□□□ 0.38
CCDC38-208ENST00000549876 MKRN4PQ13434 485 aaPredicted RBP17.37■□□□□ 0.37
CCDC38-208ENST00000549876 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
CCDC38-208ENST00000549876 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
CCDC38-208ENST00000549876 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
CCDC38-208ENST00000549876 PITPNM1O00562 1244 aa17.27■□□□□ 0.36
CCDC38-208ENST00000549876 PIP4P2Q8N4L2 257 aa17.22■□□□□ 0.35
CCDC38-208ENST00000549876 FXR2P51116 673 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC38-208ENST00000549876 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
CCDC38-208ENST00000549876 SSUH2Q9Y2M2 353 aa17.13■□□□□ 0.33
CCDC38-208ENST00000549876 ZNF692Q9BU19 519 aaPredicted RBP17.1■□□□□ 0.33
CCDC38-208ENST00000549876 SPDYE1Q8NFV5 336 aaPredicted RBP16.99■□□□□ 0.31
CCDC38-208ENST00000549876 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
CCDC38-208ENST00000549876 SP7Q8TDD2 431 aaPredicted RBP16.91■□□□□ 0.3
CCDC38-208ENST00000549876 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.29
CCDC38-208ENST00000549876 HAX1O00165 279 aa16.84■□□□□ 0.29
CCDC38-208ENST00000549876 PRKAR2AP13861 404 aaKnown RBP16.81■□□□□ 0.28
CCDC38-208ENST00000549876 EVX2Q03828 476 aa16.71■□□□□ 0.27
CCDC38-208ENST00000549876 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
CCDC38-208ENST00000549876 CHADLQ6NUI6 762 aa16.64■□□□□ 0.25
CCDC38-208ENST00000549876 C19orf67A6NJJ6 358 aa16.58■□□□□ 0.24
CCDC38-208ENST00000549876 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
CCDC38-208ENST00000549876 FARP1Q9Y4F1 1045 aaPredicted RBP16.41■□□□□ 0.22
CCDC38-208ENST00000549876 STAG3Q9UJ98 1225 aa16.4■□□□□ 0.22
CCDC38-208ENST00000549876 CREBZFQ9NS37 354 aa16.32■□□□□ 0.2
CCDC38-208ENST00000549876 GABBR2O75899 941 aa16.31■□□□□ 0.2
CCDC38-208ENST00000549876 CD44P16070 742 aaKnown RBP16.28■□□□□ 0.2
CCDC38-208ENST00000549876 PROM2Q8N271 834 aa16.21■□□□□ 0.19
CCDC38-208ENST00000549876 MNX1P50219 401 aaPredicted RBP16.08■□□□□ 0.16
CCDC38-208ENST00000549876 CLCN6P51797 869 aa16.07■□□□□ 0.16
CCDC38-208ENST00000549876 ZNF579Q8NAF0 562 aaKnown RBP16.06■□□□□ 0.16
CCDC38-208ENST00000549876 ZRANB1Q9UGI0 708 aa16.06■□□□□ 0.16
CCDC38-208ENST00000549876 POTEIP0CG38 1075 aa16■□□□□ 0.15
CCDC38-208ENST00000549876 NPM1P06748 294 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC38-208ENST00000549876 PAK3O75914 559 aaPredicted RBP15.9■□□□□ 0.14
CCDC38-208ENST00000549876 GALR2O43603 387 aaPredicted RBP15.86■□□□□ 0.13
CCDC38-208ENST00000549876 LHX8Q68G74 356 aa15.85■□□□□ 0.13
CCDC38-208ENST00000549876 PHF12Q96QT6 1004 aa15.84■□□□□ 0.13
CCDC38-208ENST00000549876 DCBLD2Q96PD2 775 aa15.83■□□□□ 0.12
CCDC38-208ENST00000549876 FKBP8Q14318 412 aa15.75■□□□□ 0.11
CCDC38-208ENST00000549876 MIER1Q8N108 512 aa15.74■□□□□ 0.11
CCDC38-208ENST00000549876 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
CCDC38-208ENST00000549876 TSPYL2Q9H2G4 693 aaPredicted RBP15.69■□□□□ 0.1
CCDC38-208ENST00000549876 CCDC61Q9Y6R9 512 aa15.66■□□□□ 0.1
CCDC38-208ENST00000549876 MS4A3Q96HJ5 214 aa15.64■□□□□ 0.09
CCDC38-208ENST00000549876 PLCD3Q8N3E9 789 aa15.6■□□□□ 0.09
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