RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DNAH14Q0VDD8 3507 aa7.86□□□□□ -1.15
CHD4-210ENST00000544040 DSPP15924 2871 aaKnown RBP7.85□□□□□ -1.15
CHD4-210ENST00000544040 DMXL2Q8TDJ6 3036 aa7.85□□□□□ -1.15
CHD4-210ENST00000544040 TPRXLQ17RH7 258 aa7.85□□□□□ -1.15
CHD4-210ENST00000544040 TRANK1O15050 2925 aa7.83□□□□□ -1.16
CHD4-210ENST00000544040 CDH23Q9H251 3354 aa7.81□□□□□ -1.16
CHD4-210ENST00000544040 HIVEP1P15822 2718 aa7.81□□□□□ -1.16
CHD4-210ENST00000544040 REV3LO60673 3130 aa7.81□□□□□ -1.16
CHD4-210ENST00000544040 KRTAP12-2P59991 146 aa7.81□□□□□ -1.16
CHD4-210ENST00000544040 ITPR1Q14643 2758 aa7.81□□□□□ -1.16
CHD4-210ENST00000544040 IGSF10Q6WRI0 2623 aa7.8□□□□□ -1.16
CHD4-210ENST00000544040 CRYBG3Q68DQ2 2970 aa7.79□□□□□ -1.16
CHD4-210ENST00000544040 COL6A3P12111 3177 aa7.78□□□□□ -1.16
CHD4-210ENST00000544040 KMT2BQ9UMN6 2715 aaPredicted RBP7.78□□□□□ -1.16
CHD4-210ENST00000544040 UTP20O75691 2785 aaKnown RBP7.77□□□□□ -1.17
CHD4-210ENST00000544040 KRTAP13-3Q3SY46 172 aa7.77□□□□□ -1.17
CHD4-210ENST00000544040 CFAP47Q6ZTR5 3102 aa7.76□□□□□ -1.17
CHD4-210ENST00000544040 TACC2O95359 2948 aa7.76□□□□□ -1.17
CHD4-210ENST00000544040 LRBAP50851 2863 aa7.75□□□□□ -1.17
CHD4-210ENST00000544040 VCANP13611 3396 aa7.7□□□□□ -1.18
CHD4-210ENST00000544040 SZT2Q5T011 3432 aa7.64□□□□□ -1.19
CHD4-210ENST00000544040 ATMQ13315 3056 aa7.64□□□□□ -1.19
CHD4-210ENST00000544040 LAMA1P25391 3075 aa7.61□□□□□ -1.19
CHD4-210ENST00000544040 NBEAQ8NFP9 2946 aa7.6□□□□□ -1.19
CHD4-210ENST00000544040 KRTAP13-4Q3LI77 160 aa7.59□□□□□ -1.19
CHD4-210ENST00000544040 COL12A1Q99715 3063 aa7.58□□□□□ -1.2
CHD4-210ENST00000544040 KRTAP21-3Q3LHN1 58 aa7.57□□□□□ -1.2
CHD4-210ENST00000544040 BOD1L1Q8NFC6 3051 aa7.56□□□□□ -1.2
CHD4-210ENST00000544040 ADGRG4Q8IZF6 3080 aa7.56□□□□□ -1.2
CHD4-210ENST00000544040 KRTAP12-1P59990 96 aa7.55□□□□□ -1.2
CHD4-210ENST00000544040 SPEGQ15772 3267 aa7.5□□□□□ -1.21
CHD4-210ENST00000544040 CELSR2Q9HCU4 2923 aa7.5□□□□□ -1.21
CHD4-210ENST00000544040 ZZEF1O43149 2961 aa7.48□□□□□ -1.21
CHD4-210ENST00000544040 FRYLO94915 3013 aa7.47□□□□□ -1.21
CHD4-210ENST00000544040 KRTAP15-1Q3LI76 137 aa7.47□□□□□ -1.21
CHD4-210ENST00000544040 TENM4Q6N022 2769 aa7.43□□□□□ -1.22
CHD4-210ENST00000544040 TGP01266 2768 aa7.42□□□□□ -1.22
CHD4-210ENST00000544040 DCHS2Q6V1P9 2916 aa7.38□□□□□ -1.23
CHD4-210ENST00000544040 KRTAP3-1Q9BYR8 98 aa7.36□□□□□ -1.23
CHD4-210ENST00000544040 USP34Q70CQ2 3546 aa7.32□□□□□ -1.24
CHD4-210ENST00000544040 EYSQ5T1H1 3165 aa7.3□□□□□ -1.24
CHD4-210ENST00000544040 FLNCQ14315 2725 aa7.3□□□□□ -1.24
CHD4-210ENST00000544040 NIPBLQ6KC79 2804 aaeCLIP7.3□□□□□ -1.247e-7■■□□□ 12
CHD4-210ENST00000544040 TENM1Q9UKZ4 2725 aa7.25□□□□□ -1.25
CHD4-210ENST00000544040 SPTBN5Q9NRC6 3674 aaKnown RBP7.25□□□□□ -1.25
CHD4-210ENST00000544040 TNRC18O15417 2968 aaPredicted RBP7.24□□□□□ -1.25
CHD4-210ENST00000544040 TENM2Q9NT68 2774 aa7.23□□□□□ -1.25
CHD4-210ENST00000544040 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
CHD4-210ENST00000544040 KRTAP10-6P60371 365 aaPredicted RBP7.17□□□□□ -1.26
CHD4-210ENST00000544040 NF1P21359 2839 aa7.17□□□□□ -1.26
CHD4-210ENST00000544040 CELSR1Q9NYQ6 3014 aa7.16□□□□□ -1.26
CHD4-210ENST00000544040 TENM3Q9P273 2699 aa7.14□□□□□ -1.27
CHD4-210ENST00000544040 FBN2P35556 2912 aa7.11□□□□□ -1.27
CHD4-210ENST00000544040 DMXL1Q9Y485 3027 aa7.11□□□□□ -1.27
CHD4-210ENST00000544040 ZANQ9Y493 2812 aa7.11□□□□□ -1.27
CHD4-210ENST00000544040 INE1O15225 51 aa7.08□□□□□ -1.28
CHD4-210ENST00000544040 HRNRQ86YZ3 2850 aaPredicted RBP7.08□□□□□ -1.28
CHD4-210ENST00000544040 WDFY3Q8IZQ1 3526 aa7.07□□□□□ -1.28
CHD4-210ENST00000544040 LOC400499M0QZD8 3231 aa7.03□□□□□ -1.28
CHD4-210ENST00000544040 DCHS1Q96JQ0 3298 aa7.03□□□□□ -1.28
CHD4-210ENST00000544040 MYO15AQ9UKN7 3530 aa7.01□□□□□ -1.29
CHD4-210ENST00000544040 PDZD2O15018 2839 aa6.98□□□□□ -1.29
CHD4-210ENST00000544040 ASPMQ8IZT6 3477 aa6.97□□□□□ -1.29
CHD4-210ENST00000544040 KRTAP10-12P60413 245 aa6.95□□□□□ -1.3
CHD4-210ENST00000544040 ZFHX4Q86UP3 3567 aa6.95□□□□□ -1.3
CHD4-210ENST00000544040 VWFP04275 2813 aa6.91□□□□□ -1.3
CHD4-210ENST00000544040 PKD1L1Q8TDX9 2849 aa6.9□□□□□ -1.3
CHD4-210ENST00000544040 CSMD1Q96PZ7 3565 aa6.88□□□□□ -1.31
CHD4-210ENST00000544040 KRTAP3-2Q9BYR7 98 aa6.86□□□□□ -1.31
CHD4-210ENST00000544040 RELNP78509 3460 aa6.84□□□□□ -1.31
CHD4-210ENST00000544040 MXRA5Q9NR99 2828 aa6.84□□□□□ -1.31
CHD4-210ENST00000544040 KRTAP3-3Q9BYR6 98 aa6.84□□□□□ -1.31
CHD4-210ENST00000544040 NBPF19A0A087WUL8 3843 aa6.83□□□□□ -1.32
CHD4-210ENST00000544040 KRTAP12-3P60328 96 aa6.77□□□□□ -1.33
CHD4-210ENST00000544040 LCE3AQ5TA76 89 aa6.75□□□□□ -1.33
CHD4-210ENST00000544040 LAMA5O15230 3695 aa6.69□□□□□ -1.34
CHD4-210ENST00000544040 MT1HL1P0DM35 61 aa6.68□□□□□ -1.34
CHD4-210ENST00000544040 KRTAP10-5P60370 271 aa6.63□□□□□ -1.35
CHD4-210ENST00000544040 MEGF8Q7Z7M0 2845 aa6.58□□□□□ -1.36
CHD4-210ENST00000544040 LORP23490 312 aaPredicted RBP6.57□□□□□ -1.36
CHD4-210ENST00000544040 FBN3Q75N90 2809 aa6.54□□□□□ -1.36
CHD4-210ENST00000544040 SMG1Q96Q15 3661 aaKnown RBP6.54□□□□□ -1.36
CHD4-210ENST00000544040 KRTAP4-5Q9BYR2 181 aa6.53□□□□□ -1.36
CHD4-210ENST00000544040 ANK3Q12955 4377 aaKnown RBP6.52□□□□□ -1.37
CHD4-210ENST00000544040 SVEP1Q4LDE5 3571 aa6.47□□□□□ -1.37
CHD4-210ENST00000544040 KRTAP23-1A1A580 65 aa6.47□□□□□ -1.37
CHD4-210ENST00000544040 SRRM2Q9UQ35 2752 aaKnown RBP6.46□□□□□ -1.38
CHD4-210ENST00000544040 ZFHX3Q15911 3703 aa6.43□□□□□ -1.38
CHD4-210ENST00000544040 CUBNO60494 3623 aa6.42□□□□□ -1.38
CHD4-210ENST00000544040 FBN1P35555 2871 aaKnown RBP6.4□□□□□ -1.39
CHD4-210ENST00000544040 SPENQ96T58 3664 aaKnown RBP6.4□□□□□ -1.39
CHD4-210ENST00000544040 COL7A1Q02388 2944 aa6.38□□□□□ -1.39
CHD4-210ENST00000544040 KRTAP8-1Q8IUC2 63 aa6.38□□□□□ -1.39
CHD4-210ENST00000544040 KRTAP10-4P60372 401 aaPredicted RBP6.36□□□□□ -1.39
CHD4-210ENST00000544040 HUWE1Q7Z6Z7 4374 aaKnown RBP6.36□□□□□ -1.39
CHD4-210ENST00000544040 DMDP11532 3685 aa6.32□□□□□ -1.4
CHD4-210ENST00000544040 CSMD2Q7Z408 3487 aa6.3□□□□□ -1.4
CHD4-210ENST00000544040 TRRAPQ9Y4A5 3859 aa6.29□□□□□ -1.4
CHD4-210ENST00000544040 MUC3AQ02505 3323 aa6.22□□□□□ -1.41
CHD4-210ENST00000544040 ALMS1Q8TCU4 4167 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms