RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PLAC4Q8WY50 150 aa8.05□□□□□ -1.12
COLCA1-204ENST00000540738 KTN1-AS1Q86SY8 53 aa8.05□□□□□ -1.12
COLCA1-204ENST00000540738 LINC01558Q9Y6Z2 57 aa8.05□□□□□ -1.12
COLCA1-204ENST00000540738 KRTAP29-1A8MX34 341 aaPredicted RBP8.04□□□□□ -1.12
COLCA1-204ENST00000540738 VCANP13611 3396 aa8.04□□□□□ -1.12
COLCA1-204ENST00000540738 DCHS2Q6V1P9 2916 aa8.03□□□□□ -1.12
COLCA1-204ENST00000540738 ASH1LQ9NR48 2969 aaKnown RBP8.01□□□□□ -1.13
COLCA1-204ENST00000540738 NF1P21359 2839 aa7.98□□□□□ -1.13
COLCA1-204ENST00000540738 FREM2Q5SZK8 3169 aa7.98□□□□□ -1.13
COLCA1-204ENST00000540738 NOTCH2NLQ7Z3S9 236 aa7.96□□□□□ -1.13
COLCA1-204ENST00000540738 ADM2Q7Z4H4 148 aa7.96□□□□□ -1.13
COLCA1-204ENST00000540738 HRNRQ86YZ3 2850 aaPredicted RBP7.94□□□□□ -1.14
COLCA1-204ENST00000540738 C20orf166-AS1Q96NR2 134 aa7.93□□□□□ -1.14
COLCA1-204ENST00000540738 MXRA5Q9NR99 2828 aa7.93□□□□□ -1.14
COLCA1-204ENST00000540738 USP34Q70CQ2 3546 aa7.91□□□□□ -1.14
COLCA1-204ENST00000540738 A0A0A0MQY5 61 aa7.88□□□□□ -1.15
COLCA1-204ENST00000540738 KRTAP1-4P0C5Y4 121 aa7.87□□□□□ -1.15
COLCA1-204ENST00000540738 TENM3Q9P273 2699 aa7.86□□□□□ -1.15
COLCA1-204ENST00000540738 SPTBN5Q9NRC6 3674 aaKnown RBP7.86□□□□□ -1.15
COLCA1-204ENST00000540738 TENM1Q9UKZ4 2725 aa7.86□□□□□ -1.15
COLCA1-204ENST00000540738 A8MUU9 505 aa7.86□□□□□ -1.15
COLCA1-204ENST00000540738 LUZP6Q538Z0 58 aa7.86□□□□□ -1.15
COLCA1-204ENST00000540738 TENM2Q9NT68 2774 aa7.84□□□□□ -1.15
COLCA1-204ENST00000540738 TPRXLQ17RH7 258 aa7.83□□□□□ -1.16
COLCA1-204ENST00000540738 A0A1B0GVY2 172 aa7.8□□□□□ -1.16
COLCA1-204ENST00000540738 XP32Q5T750 250 aa7.78□□□□□ -1.16
COLCA1-204ENST00000540738 CFAP47Q6ZTR5 3102 aa7.76□□□□□ -1.17
COLCA1-204ENST00000540738 DNAH14Q0VDD8 3507 aa7.75□□□□□ -1.17
COLCA1-204ENST00000540738 FBN2P35556 2912 aa7.74□□□□□ -1.17
COLCA1-204ENST00000540738 PDZD2O15018 2839 aa7.72□□□□□ -1.17
COLCA1-204ENST00000540738 Q5VV11 94 aa7.71□□□□□ -1.17
COLCA1-204ENST00000540738 CYSTM1Q9H1C7 97 aa7.71□□□□□ -1.18
COLCA1-204ENST00000540738 ROMO1P60602 79 aa7.69□□□□□ -1.18
COLCA1-204ENST00000540738 SPATA8Q6RVD6 105 aa7.67□□□□□ -1.18
COLCA1-204ENST00000540738 SPEGQ15772 3267 aa7.63□□□□□ -1.19
COLCA1-204ENST00000540738 LOC400499M0QZD8 3231 aa7.62□□□□□ -1.19
COLCA1-204ENST00000540738 KRTAP10-8P60410 259 aa7.61□□□□□ -1.19
COLCA1-204ENST00000540738 PKD1L1Q8TDX9 2849 aa7.61□□□□□ -1.19
COLCA1-204ENST00000540738 KRTAP16-1A8MUX0 517 aa7.6□□□□□ -1.19
COLCA1-204ENST00000540738 KRTAP13-3Q3SY46 172 aa7.6□□□□□ -1.19
COLCA1-204ENST00000540738 CELSR1Q9NYQ6 3014 aa7.59□□□□□ -1.19
COLCA1-204ENST00000540738 OTOGQ6ZRI0 2925 aa7.58□□□□□ -1.2
COLCA1-204ENST00000540738 DCHS1Q96JQ0 3298 aa7.47□□□□□ -1.21
COLCA1-204ENST00000540738 KRTAP10-10P60014 251 aa7.46□□□□□ -1.21
COLCA1-204ENST00000540738 TNP1P09430 55 aa7.45□□□□□ -1.22
COLCA1-204ENST00000540738 TGP01266 2768 aa7.43□□□□□ -1.22
COLCA1-204ENST00000540738 PRAC1Q96KF2 57 aa7.41□□□□□ -1.22
COLCA1-204ENST00000540738 A8MU10 97 aa7.4□□□□□ -1.22
COLCA1-204ENST00000540738 VWFP04275 2813 aa7.39□□□□□ -1.23
COLCA1-204ENST00000540738 PRO2289Q9P1D8 64 aa7.35□□□□□ -1.23
COLCA1-204ENST00000540738 MYO15AQ9UKN7 3530 aa7.33□□□□□ -1.24
COLCA1-204ENST00000540738 RELNP78509 3460 aa7.32□□□□□ -1.24
COLCA1-204ENST00000540738 FBN1P35555 2871 aaKnown RBP7.3□□□□□ -1.24
COLCA1-204ENST00000540738 NBPF19A0A087WUL8 3843 aa7.27□□□□□ -1.25
COLCA1-204ENST00000540738 ZFHX3Q15911 3703 aa7.19□□□□□ -1.26
COLCA1-204ENST00000540738 PP632Q6XCG6 107 aa7.16□□□□□ -1.26
COLCA1-204ENST00000540738 ANK3Q12955 4377 aaKnown RBP7.16□□□□□ -1.26
COLCA1-204ENST00000540738 WDFY3Q8IZQ1 3526 aa7.13□□□□□ -1.27
COLCA1-204ENST00000540738 FBN3Q75N90 2809 aa7.12□□□□□ -1.27
COLCA1-204ENST00000540738 KRTAP25-1Q3LHN0 102 aa7.1□□□□□ -1.27
COLCA1-204ENST00000540738 LAMA5O15230 3695 aa7.08□□□□□ -1.28
COLCA1-204ENST00000540738 SRRM2Q9UQ35 2752 aaKnown RBP7.07□□□□□ -1.28
COLCA1-204ENST00000540738 MT1HL1P0DM35 61 aa7.03□□□□□ -1.28
COLCA1-204ENST00000540738 P0C880 135 aa7.03□□□□□ -1.28
COLCA1-204ENST00000540738 A6NN06 94 aa7.02□□□□□ -1.28
COLCA1-204ENST00000540738 NDUFAF8A1L188 74 aa7□□□□□ -1.29
COLCA1-204ENST00000540738 MUC3AQ02505 3323 aa6.99□□□□□ -1.29
COLCA1-204ENST00000540738 ASPMQ8IZT6 3477 aa6.95□□□□□ -1.3
COLCA1-204ENST00000540738 H0YAA0 97 aa6.94□□□□□ -1.3
COLCA1-204ENST00000540738 C10orf95Q9H7T3 257 aa6.91□□□□□ -1.3
COLCA1-204ENST00000540738 KRTAP4-5Q9BYR2 181 aa6.88□□□□□ -1.31
COLCA1-204ENST00000540738 MEGF8Q7Z7M0 2845 aa6.88□□□□□ -1.31
COLCA1-204ENST00000540738 DMDP11532 3685 aa6.85□□□□□ -1.31
COLCA1-204ENST00000540738 KRTAP10-4P60372 401 aaPredicted RBP6.85□□□□□ -1.31
COLCA1-204ENST00000540738 SMG1Q96Q15 3661 aaKnown RBP6.83□□□□□ -1.32
COLCA1-204ENST00000540738 ZFHX4Q86UP3 3567 aa6.81□□□□□ -1.32
COLCA1-204ENST00000540738 COL7A1Q02388 2944 aa6.78□□□□□ -1.32
COLCA1-204ENST00000540738 CSMD1Q96PZ7 3565 aa6.77□□□□□ -1.33
COLCA1-204ENST00000540738 TRRAPQ9Y4A5 3859 aa6.76□□□□□ -1.33
COLCA1-204ENST00000540738 CSMD2Q7Z408 3487 aa6.75□□□□□ -1.33
COLCA1-204ENST00000540738 ALMS1Q8TCU4 4167 aa6.73□□□□□ -1.33
COLCA1-204ENST00000540738 KRTAP3-1Q9BYR8 98 aa6.71□□□□□ -1.33
COLCA1-204ENST00000540738 HUWE1Q7Z6Z7 4374 aaKnown RBP6.67□□□□□ -1.34
COLCA1-204ENST00000540738 KRTAP13-4Q3LI77 160 aa6.64□□□□□ -1.35
COLCA1-204ENST00000540738 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
COLCA1-204ENST00000540738 KRTAP12-1P59990 96 aa6.58□□□□□ -1.36
COLCA1-204ENST00000540738 SPENQ96T58 3664 aaKnown RBP6.57□□□□□ -1.36
COLCA1-204ENST00000540738 BSNQ9UPA5 3926 aa6.52□□□□□ -1.37
COLCA1-204ENST00000540738 DNAH9Q9NYC9 4486 aa6.46□□□□□ -1.38
COLCA1-204ENST00000540738 KRTAP10-6P60371 365 aaPredicted RBP6.46□□□□□ -1.38
COLCA1-204ENST00000540738 CUBNO60494 3623 aa6.43□□□□□ -1.38
COLCA1-204ENST00000540738 DNHD1Q96M86 4753 aa6.4□□□□□ -1.38
COLCA1-204ENST00000540738 DNAH5Q8TE73 4624 aa6.37□□□□□ -1.39
COLCA1-204ENST00000540738 DNAH11Q96DT5 4516 aa6.36□□□□□ -1.39
COLCA1-204ENST00000540738 SVEP1Q4LDE5 3571 aa6.36□□□□□ -1.39
COLCA1-204ENST00000540738 DNAH1Q9P2D7 4330 aa6.35□□□□□ -1.39
COLCA1-204ENST00000540738 KRTAP15-1Q3LI76 137 aa6.35□□□□□ -1.39
COLCA1-204ENST00000540738 KRTAP3-3Q9BYR6 98 aa6.32□□□□□ -1.4
COLCA1-204ENST00000540738 KRTAP10-12P60413 245 aa6.3□□□□□ -1.4
COLCA1-204ENST00000540738 AKAP9Q99996 3911 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms