RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 DCAF8L2P0C7V8 631 aa25.78■■□□□ 1.72
COLCA1-204ENST00000540738 NISCHQ9Y2I1 1504 aa25.43■■□□□ 1.66
COLCA1-204ENST00000540738 SUPT5HO00267 1087 aaKnown RBP23.77■■□□□ 1.4
COLCA1-204ENST00000540738 SHROOM4Q9ULL8 1493 aa23.63■■□□□ 1.37
COLCA1-204ENST00000540738 FAM9AQ8IZU1 332 aaPredicted RBP23.04■■□□□ 1.28
COLCA1-204ENST00000540738 APLP2Q06481 763 aa22.72■■□□□ 1.23
COLCA1-204ENST00000540738 EHMT2Q96KQ7 1210 aa22.68■■□□□ 1.22
COLCA1-204ENST00000540738 ABCC9O60706 1549 aa22.32■■□□□ 1.16
COLCA1-204ENST00000540738 TRIM41Q8WV44 630 aa22.25■■□□□ 1.15
COLCA1-204ENST00000540738 RANGAP1P46060 587 aaPredicted RBP22.08■■□□□ 1.12
COLCA1-204ENST00000540738 ATP1B4Q9UN42 357 aaPredicted RBP22.07■■□□□ 1.12
COLCA1-204ENST00000540738 UBTFP17480 764 aaKnown RBP21.99■■□□□ 1.11
COLCA1-204ENST00000540738 PABPN1Q86U42 306 aaKnown RBP eCLIP21.92■■□□□ 1.1
COLCA1-204ENST00000540738 TTBK1Q5TCY1 1321 aaPredicted RBP21.81■■□□□ 1.08
COLCA1-204ENST00000540738 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.59■■□□□ 1.05
COLCA1-204ENST00000540738 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
COLCA1-204ENST00000540738 MYT1LQ9UL68 1186 aa21.54■■□□□ 1.04
COLCA1-204ENST00000540738 PCGF6Q9BYE7 350 aa21.37■■□□□ 1.01
COLCA1-204ENST00000540738 PELP1Q8IZL8 1130 aaKnown RBP21.28■■□□□ 1
COLCA1-204ENST00000540738 CCDC180Q9P1Z9 1646 aa21.26■□□□□ 0.99
COLCA1-204ENST00000540738 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
COLCA1-204ENST00000540738 FBLN2P98095 1184 aa21.17■□□□□ 0.98
COLCA1-204ENST00000540738 ZEB1P37275 1124 aaPredicted RBP21.16■□□□□ 0.98
COLCA1-204ENST00000540738 SCRIBQ14160 1630 aa21.13■□□□□ 0.97
COLCA1-204ENST00000540738 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
COLCA1-204ENST00000540738 CHIC1Q5VXU3 224 aa21.02■□□□□ 0.95
COLCA1-204ENST00000540738 ITGAEP38570 1179 aa21■□□□□ 0.95
COLCA1-204ENST00000540738 ZCCHC6Q5VYS8 1495 aaKnown RBP20.98■□□□□ 0.95
COLCA1-204ENST00000540738 PPARGC1BQ86YN6 1023 aaKnown RBP20.93■□□□□ 0.94
COLCA1-204ENST00000540738 NACADO15069 1562 aa20.78■□□□□ 0.92
COLCA1-204ENST00000540738 LOC105371045A0A1W2PR82 267 aa20.76■□□□□ 0.91
COLCA1-204ENST00000540738 TRIM26Q12899 539 aaPredicted RBP20.75■□□□□ 0.91
COLCA1-204ENST00000540738 NPM1P06748 294 aaKnown RBP eCLIP20.7■□□□□ 0.9
COLCA1-204ENST00000540738 FAM50AQ14320 339 aaKnown RBP20.7■□□□□ 0.9
COLCA1-204ENST00000540738 CDK11AQ9UQ88 783 aaPredicted RBP20.64■□□□□ 0.9
COLCA1-204ENST00000540738 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
COLCA1-204ENST00000540738 CENPBP07199 599 aaPredicted RBP20.62■□□□□ 0.89
COLCA1-204ENST00000540738 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
COLCA1-204ENST00000540738 TRIM52Q96A61 297 aa20.58■□□□□ 0.89
COLCA1-204ENST00000540738 SLC4A1APQ9BWU0 796 aaKnown RBP20.52■□□□□ 0.87
COLCA1-204ENST00000540738 P3H3Q8IVL6 736 aa20.5■□□□□ 0.87
COLCA1-204ENST00000540738 ESF1Q9H501 851 aaKnown RBP20.5■□□□□ 0.87
COLCA1-204ENST00000540738 CHMP7Q8WUX9 453 aaPredicted RBP20.46■□□□□ 0.87
COLCA1-204ENST00000540738 NEFLP07196 543 aa20.46■□□□□ 0.87
COLCA1-204ENST00000540738 ARID3CA6NKF2 412 aa20.44■□□□□ 0.86
COLCA1-204ENST00000540738 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
COLCA1-204ENST00000540738 ZNF777Q9ULD5 760 aaPredicted RBP20.36■□□□□ 0.85
COLCA1-204ENST00000540738 BCANQ96GW7 911 aa20.35■□□□□ 0.85
COLCA1-204ENST00000540738 ERCC6Q03468 1493 aa20.34■□□□□ 0.85
COLCA1-204ENST00000540738 DCAF1Q9Y4B6 1507 aa20.24■□□□□ 0.83
COLCA1-204ENST00000540738 CNGB1Q14028 1251 aaPredicted RBP20.18■□□□□ 0.82
COLCA1-204ENST00000540738 ZNF326Q5BKZ1 582 aaKnown RBP20.17■□□□□ 0.82
COLCA1-204ENST00000540738 STAG3Q9UJ98 1225 aa20.16■□□□□ 0.82
COLCA1-204ENST00000540738 YTHDC1Q96MU7 727 aaKnown RBP20.15■□□□□ 0.82
COLCA1-204ENST00000540738 NEUROD1Q13562 356 aa20.15■□□□□ 0.82
COLCA1-204ENST00000540738 BAZ1AQ9NRL2 1556 aaPredicted RBP20.14■□□□□ 0.81
COLCA1-204ENST00000540738 ERICH6Q7L0X2 663 aa20.14■□□□□ 0.81
COLCA1-204ENST00000540738 RSF1Q96T23 1441 aaPredicted RBP20.11■□□□□ 0.81
COLCA1-204ENST00000540738 PLPPR3Q6T4P5 718 aa20.04■□□□□ 0.8
COLCA1-204ENST00000540738 TSPY4P0CV99 314 aa20.03■□□□□ 0.8
COLCA1-204ENST00000540738 TSPY10P0CW01 314 aa20.03■□□□□ 0.8
COLCA1-204ENST00000540738 CHGAP10645 457 aaKnown RBP20■□□□□ 0.79
COLCA1-204ENST00000540738 WRNQ14191 1432 aaPredicted RBP eCLIP19.98■□□□□ 0.79
COLCA1-204ENST00000540738 PLEKHD1A6NEE1 506 aa19.97■□□□□ 0.79
COLCA1-204ENST00000540738 HRCP23327 699 aa19.97■□□□□ 0.79
COLCA1-204ENST00000540738 MTUS2Q5JR59 1369 aa19.96■□□□□ 0.79
COLCA1-204ENST00000540738 EEA1Q15075 1411 aa19.96■□□□□ 0.79
COLCA1-204ENST00000540738 KIF27Q86VH2 1401 aa19.95■□□□□ 0.78
COLCA1-204ENST00000540738 NEFMP07197 916 aa19.94■□□□□ 0.78
COLCA1-204ENST00000540738 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
COLCA1-204ENST00000540738 KCNH8Q96L42 1107 aa19.91■□□□□ 0.78
COLCA1-204ENST00000540738 SMARCA2P51531 1590 aa19.9■□□□□ 0.78
COLCA1-204ENST00000540738 MYO15BQ96JP2 1530 aa19.85■□□□□ 0.77
COLCA1-204ENST00000540738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.85■□□□□ 0.77
COLCA1-204ENST00000540738 CECR2Q9BXF3 1484 aa19.81■□□□□ 0.76
COLCA1-204ENST00000540738 CLIP1P30622 1438 aa19.79■□□□□ 0.76
COLCA1-204ENST00000540738 DAXXQ9UER7 740 aaPredicted RBP19.78■□□□□ 0.76
COLCA1-204ENST00000540738 ARID4BQ4LE39 1312 aaPredicted RBP19.78■□□□□ 0.76
COLCA1-204ENST00000540738 SLC24A1O60721 1099 aa19.77■□□□□ 0.75
COLCA1-204ENST00000540738 CHIC2Q9UKJ5 165 aa19.77■□□□□ 0.75
COLCA1-204ENST00000540738 TRHP20396 242 aaPredicted RBP19.76■□□□□ 0.75
COLCA1-204ENST00000540738 GOLGA3Q08378 1498 aa19.75■□□□□ 0.75
COLCA1-204ENST00000540738 ANP32CO43423 234 aa19.75■□□□□ 0.75
COLCA1-204ENST00000540738 ACIN1Q9UKV3 1341 aaKnown RBP19.73■□□□□ 0.75
COLCA1-204ENST00000540738 TONSLQ96HA7 1378 aa19.71■□□□□ 0.75
COLCA1-204ENST00000540738 PPP1R15AO75807 674 aaPredicted RBP19.67■□□□□ 0.74
COLCA1-204ENST00000540738 ZBTB47Q9UFB7 747 aaPredicted RBP19.66■□□□□ 0.74
COLCA1-204ENST00000540738 CFDP1Q9UEE9 299 aaPredicted RBP19.65■□□□□ 0.74
COLCA1-204ENST00000540738 CUX2O14529 1486 aa19.64■□□□□ 0.73
COLCA1-204ENST00000540738 CEP164Q9UPV0 1460 aa19.64■□□□□ 0.73
COLCA1-204ENST00000540738 DIEXFQ68CQ4 756 aaKnown RBP19.64■□□□□ 0.73
COLCA1-204ENST00000540738 CLSPNQ9HAW4 1339 aa19.63■□□□□ 0.73
COLCA1-204ENST00000540738 CARMIL1Q5VZK9 1371 aa19.6■□□□□ 0.73
COLCA1-204ENST00000540738 CADPSQ9ULU8 1353 aa19.58■□□□□ 0.72
COLCA1-204ENST00000540738 CARMIL2Q6F5E8 1435 aa19.58■□□□□ 0.72
COLCA1-204ENST00000540738 MROH2BQ7Z745 1585 aa19.56■□□□□ 0.72
COLCA1-204ENST00000540738 C14orf37Q86TY3 774 aa19.55■□□□□ 0.72
COLCA1-204ENST00000540738 SOGA1O94964 1423 aa19.55■□□□□ 0.72
COLCA1-204ENST00000540738 EIF4G1Q04637 1599 aaKnown RBP19.55■□□□□ 0.72
COLCA1-204ENST00000540738 CANXP27824 592 aaKnown RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms