RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FAM236BA0A1B0GV22 79 aa12.22□□□□□ -0.45
VPS28-212ENST00000530836 HERC1Q15751 4861 aa12.21□□□□□ -0.45
VPS28-212ENST00000530836 A8MWP4 228 aa12.21□□□□□ -0.46
VPS28-212ENST00000530836 Q8N9L7 120 aa12.2□□□□□ -0.46
VPS28-212ENST00000530836 NDUFB1O75438 58 aa12.19□□□□□ -0.46
VPS28-212ENST00000530836 K7EQZ3 153 aa12.19□□□□□ -0.46
VPS28-212ENST00000530836 PRR15Q8IV56 129 aa12.16□□□□□ -0.46
VPS28-212ENST00000530836 ATOX1O00244 68 aa12.12□□□□□ -0.47
VPS28-212ENST00000530836 C1orf195Q5TG92 126 aa12.11□□□□□ -0.47
VPS28-212ENST00000530836 A0A1B0GVX0 72 aa12.08□□□□□ -0.48
VPS28-212ENST00000530836 HCG22E2RYF7 251 aa12.08□□□□□ -0.48
VPS28-212ENST00000530836 ANAPC13Q9BS18 74 aa12.05□□□□□ -0.48
VPS28-212ENST00000530836 PCP4P48539 62 aa12.04□□□□□ -0.48
VPS28-212ENST00000530836 SMIM20Q8N5G0 67 aa12.04□□□□□ -0.48
VPS28-212ENST00000530836 IGHV6-1A0A0B4J1U7 121 aa12.01□□□□□ -0.49
VPS28-212ENST00000530836 C8orf87E5RJ46 101 aa11.99□□□□□ -0.49
VPS28-212ENST00000530836 CASC2Q6XLA1 102 aa11.99□□□□□ -0.49
VPS28-212ENST00000530836 C8orf17Q9NRJ1 99 aa11.99□□□□□ -0.49
VPS28-212ENST00000530836 MMP24-AS1A0A0U1RRL7 71 aa11.98□□□□□ -0.49
VPS28-212ENST00000530836 hDV103S1A0JD37 113 aa11.96□□□□□ -0.5
VPS28-212ENST00000530836 WFDC13Q8IUB5 93 aa11.96□□□□□ -0.5
VPS28-212ENST00000530836 SERP2Q8N6R1 65 aa11.93□□□□□ -0.5
VPS28-212ENST00000530836 TRAV7A0A075B6U4 112 aa11.93□□□□□ -0.5
VPS28-212ENST00000530836 LINC00313P59037 77 aa11.9□□□□□ -0.5
VPS28-212ENST00000530836 TMEM254Q8TBM7 123 aa11.89□□□□□ -0.51
VPS28-212ENST00000530836 HMCN2Q8NDA2 5059 aa11.89□□□□□ -0.51
VPS28-212ENST00000530836 OCR1Q9BZK8 76 aa11.89□□□□□ -0.51
VPS28-212ENST00000530836 COX7CP15954 63 aa11.88□□□□□ -0.51
VPS28-212ENST00000530836 MRPL34Q9BQ48 92 aaKnown RBP11.86□□□□□ -0.51
VPS28-212ENST00000530836 UQCRQO14949 82 aa11.85□□□□□ -0.51
VPS28-212ENST00000530836 NOTCH2NLQ7Z3S9 236 aa11.85□□□□□ -0.51
VPS28-212ENST00000530836 TP53AIP1Q9HCN2 124 aa11.82□□□□□ -0.52
VPS28-212ENST00000530836 FP248Q71RG6 208 aaPredicted RBP11.81□□□□□ -0.52
VPS28-212ENST00000530836 RETNLBQ9BQ08 111 aa11.78□□□□□ -0.52
VPS28-212ENST00000530836 C5orf47Q569G3 176 aa11.75□□□□□ -0.53
VPS28-212ENST00000530836 NDUFS5O43920 106 aa11.75□□□□□ -0.53
VPS28-212ENST00000530836 PRR4Q16378 134 aa11.74□□□□□ -0.53
VPS28-212ENST00000530836 KRTAP16-1A8MUX0 517 aa11.73□□□□□ -0.53
VPS28-212ENST00000530836 CCDC179H3BU77 68 aa11.73□□□□□ -0.53
VPS28-212ENST00000530836 Q8N9P0 234 aaPredicted RBP11.73□□□□□ -0.53
VPS28-212ENST00000530836 C20orf197Q8N268 126 aa11.68□□□□□ -0.54
VPS28-212ENST00000530836 MP68P56378 58 aa11.67□□□□□ -0.54
VPS28-212ENST00000530836 TRAV22A0A0B4J277 110 aa11.65□□□□□ -0.54
VPS28-212ENST00000530836 H3BPC8 53 aa11.64□□□□□ -0.55
VPS28-212ENST00000530836 KLKP1Q107X0 134 aa11.64□□□□□ -0.55
VPS28-212ENST00000530836 IGLV7-46A0A075B6I9 117 aa11.64□□□□□ -0.55
VPS28-212ENST00000530836 LRP2P98164 4655 aa11.62□□□□□ -0.55
VPS28-212ENST00000530836 C9orf92A6NGG3 77 aa11.62□□□□□ -0.55
VPS28-212ENST00000530836 H0Y9P7 68 aa11.62□□□□□ -0.55
VPS28-212ENST00000530836 A0A0U1RQV1 116 aa11.6□□□□□ -0.55
VPS28-212ENST00000530836 LPAP08519 4548 aa11.58□□□□□ -0.55
VPS28-212ENST00000530836 C20orf166-AS1Q96NR2 134 aa11.58□□□□□ -0.56
VPS28-212ENST00000530836 A8MUU9 505 aa11.56□□□□□ -0.56
VPS28-212ENST00000530836 NDUFC1O43677 76 aa11.56□□□□□ -0.56
VPS28-212ENST00000530836 SNURFQ9Y675 71 aa11.56□□□□□ -0.56
VPS28-212ENST00000530836 KRTAP13-3Q3SY46 172 aa11.53□□□□□ -0.56
VPS28-212ENST00000530836 LINC00208Q96KT6 92 aa11.53□□□□□ -0.56
VPS28-212ENST00000530836 TPRXLQ17RH7 258 aa11.52□□□□□ -0.57
VPS28-212ENST00000530836 ZCCHC13Q8WW36 166 aaKnown RBP11.52□□□□□ -0.57
VPS28-212ENST00000530836 C1orf64Q8NEQ6 169 aa11.51□□□□□ -0.57
VPS28-212ENST00000530836 Q5W150 140 aa11.5□□□□□ -0.57
VPS28-212ENST00000530836 Q75L30 129 aa11.5□□□□□ -0.57
VPS28-212ENST00000530836 LOC101927531A0A1B0GV80 90 aa11.47□□□□□ -0.57
VPS28-212ENST00000530836 UBR4Q5T4S7 5183 aa11.47□□□□□ -0.57
VPS28-212ENST00000530836 CYSTM1Q9H1C7 97 aa11.46□□□□□ -0.57
VPS28-212ENST00000530836 H7BZZ5 65 aa11.43□□□□□ -0.58
VPS28-212ENST00000530836 XP32Q5T750 250 aa11.41□□□□□ -0.58
VPS28-212ENST00000530836 TMEM258P61165 79 aa11.4□□□□□ -0.58
VPS28-212ENST00000530836 RPL37P61927 97 aaKnown RBP11.38□□□□□ -0.59
VPS28-212ENST00000530836 IGKV2-30P06310 120 aa11.35□□□□□ -0.59
VPS28-212ENST00000530836 ATP11AUNQ6ZP68 121 aa11.35□□□□□ -0.59
VPS28-212ENST00000530836 CYP4F30PQ9H0H9 118 aa11.35□□□□□ -0.59
VPS28-212ENST00000530836 ATP5EP56381 51 aaPredicted RBP11.3□□□□□ -0.6
VPS28-212ENST00000530836 C7orf65Q6ZTY9 151 aa11.28□□□□□ -0.6
VPS28-212ENST00000530836 SPANXA2-OT1Q8N9U9 137 aa11.27□□□□□ -0.6
VPS28-212ENST00000530836 IGKV2D-30A0A075B6S6 120 aa11.27□□□□□ -0.61
VPS28-212ENST00000530836 FAM236DA0A1B0GTK5 79 aa11.26□□□□□ -0.61
VPS28-212ENST00000530836 FAM236CP0DP71 79 aa11.26□□□□□ -0.61
VPS28-212ENST00000530836 PCOTHQ58A44 107 aa11.25□□□□□ -0.61
VPS28-212ENST00000530836 RNF213Q63HN8 5207 aa11.21□□□□□ -0.61
VPS28-212ENST00000530836 MUC17Q685J3 4493 aa11.18□□□□□ -0.62
VPS28-212ENST00000530836 SPINK7P58062 85 aa11.17□□□□□ -0.62
VPS28-212ENST00000530836 SEC61BP60468 96 aaKnown RBP11.15□□□□□ -0.62
VPS28-212ENST00000530836 HRES1P13985 223 aa11.14□□□□□ -0.63
VPS28-212ENST00000530836 MUC2Q02817 5179 aa11.09□□□□□ -0.63
VPS28-212ENST00000530836 SERP1Q9Y6X1 66 aa11.04□□□□□ -0.64
VPS28-212ENST00000530836 RPS28P62857 69 aaKnown RBP11.02□□□□□ -0.64
VPS28-212ENST00000530836 DMAC1Q96GE9 116 aa11.01□□□□□ -0.65
VPS28-212ENST00000530836 A8MUN3 132 aa10.97□□□□□ -0.65
VPS28-212ENST00000530836 ACYP2P14621 99 aa10.97□□□□□ -0.65
VPS28-212ENST00000530836 KRTAP4-1Q9BYQ7 146 aa10.97□□□□□ -0.65
VPS28-212ENST00000530836 C4orf26Q17RF5 130 aa10.96□□□□□ -0.65
VPS28-212ENST00000530836 COX6B2Q6YFQ2 88 aa10.9□□□□□ -0.66
VPS28-212ENST00000530836 COA5Q86WW8 74 aa10.87□□□□□ -0.67
VPS28-212ENST00000530836 MPLKIPQ8TAP9 179 aa10.8□□□□□ -0.68
VPS28-212ENST00000530836 KRTAP3-1Q9BYR8 98 aa10.8□□□□□ -0.68
VPS28-212ENST00000530836 RBM12B-AS1Q9P1G2 102 aa10.8□□□□□ -0.68
VPS28-212ENST00000530836 CHKB-CPT1BH3BT56 60 aa10.77□□□□□ -0.68
VPS28-212ENST00000530836 FAT4Q6V0I7 4981 aa10.75□□□□□ -0.69
VPS28-212ENST00000530836 SMIM26A0A096LP01 95 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms