RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 KAAG1Q9UBP8 84 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 USP34Q70CQ2 3546 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 CACNA1CQ13936 2221 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 PIEZO2Q9H5I5 2752 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 MTORP42345 2549 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 M0QY20 66 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 C10orf99Q6UWK7 81 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 TP53AIP1Q9HCN2 124 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 TENM2Q9NT68 2774 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 CADP27708 2225 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 SORL1Q92673 2214 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 HTTP42858 3142 aa1.04□□□□□ -2.24
CD44-216ENST00000525293 FAT4Q6V0I7 4981 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 DCHS1Q96JQ0 3298 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 XIRP2A4UGR9 3374 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 ABCA1O95477 2261 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 IGLV5-48A0A075B6I7 105 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 MMP24-AS1A0A0U1RRL7 71 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 LYNX1P0DP58 116 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 DEFB130BP0DP73 79 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 DEFB130AP0DP74 79 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 RPL37P61927 97 aaKnown RBP1.03□□□□□ -2.24
CD44-216ENST00000525293 H1FX-AS1Q4G0G2 97 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 RPL39P5Q59GN2 51 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 UBE2DNLQ8IWF7 75 aa1.03□□□□□ -2.24
CD44-216ENST00000525293 IGF2RP11717 2491 aa1.03□□□□□ -2.25
CD44-216ENST00000525293 CELSR1Q9NYQ6 3014 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 PRUNE2Q8WUY3 3088 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 DEFB108AA8MXU0 73 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 WT1-ASQ06250 92 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 KRTAP13-4Q3LI77 160 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 RIF1Q5UIP0 2472 aaKnown RBP1.02□□□□□ -2.25
CD44-216ENST00000525293 RTTNQ86VV8 2226 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 NBEAQ8NFP9 2946 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 TOMM7Q9P0U1 55 aa1.02□□□□□ -2.25
CD44-216ENST00000525293 MGAM2Q2M2H8 2515 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 HERC2O95714 4834 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 NF1P21359 2839 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 STAB2Q8WWQ8 2551 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 STATHP02808 62 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 DEFB105AQ8NG35 78 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 KNTC1P50748 2209 aa1.01□□□□□ -2.25
CD44-216ENST00000525293 SPTA1P02549 2419 aa1□□□□□ -2.25
CD44-216ENST00000525293 FAM186AA6NE01 2351 aa1□□□□□ -2.25
CD44-216ENST00000525293 ASXL3Q9C0F0 2248 aa1□□□□□ -2.25
CD44-216ENST00000525293 TMEM167AQ8TBQ9 72 aa1□□□□□ -2.25
CD44-216ENST00000525293 ALMS1Q8TCU4 4167 aa1□□□□□ -2.25
CD44-216ENST00000525293 MXRA5Q9NR99 2828 aa1□□□□□ -2.25
CD44-216ENST00000525293 SPINK13Q1W4C9 94 aa0.99□□□□□ -2.25
CD44-216ENST00000525293 KRTAP6-3Q3LI67 103 aa0.99□□□□□ -2.25
CD44-216ENST00000525293 DEFB123Q8N688 67 aa0.99□□□□□ -2.25
CD44-216ENST00000525293 APLNQ9ULZ1 77 aa0.99□□□□□ -2.25
CD44-216ENST00000525293 SMG1Q96Q15 3661 aaKnown RBP0.99□□□□□ -2.25
CD44-216ENST00000525293 DNAH14Q0VDD8 3507 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 FLG2Q5D862 2391 aaPredicted RBP0.98□□□□□ -2.25
CD44-216ENST00000525293 FRYQ5TBA9 3013 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 CELSR2Q9HCU4 2923 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 K7EIL1 84 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 CLPSL2Q6UWE3 100 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 UNQ6190/PRO20217Q6UXQ8 127 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 COX6B2Q6YFQ2 88 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 ASCC3Q8N3C0 2202 aaKnown RBP0.98□□□□□ -2.25
CD44-216ENST00000525293 DMBT1Q9UGM3 2413 aaPredicted RBP0.98□□□□□ -2.25
CD44-216ENST00000525293 CRYBG3Q68DQ2 2970 aa0.98□□□□□ -2.25
CD44-216ENST00000525293 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.98□□□□□ -2.25
CD44-216ENST00000525293 URB1O60287 2271 aaKnown RBP0.98□□□□□ -2.25
CD44-216ENST00000525293 KMT2DO14686 5537 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 RNF213Q63HN8 5207 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 CACNA1EQ15878 2313 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 KNL1Q8NG31 2342 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 K7EIM0 57 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 PRLHP81277 87 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 MYO15AQ9UKN7 3530 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 TENM3Q9P273 2699 aa0.97□□□□□ -2.25
CD44-216ENST00000525293 ZZEF1O43149 2961 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 SPRR1AP35321 89 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 KLK9Q2XQG4 91 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 KRTAP4-1Q9BYQ7 146 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 CHD7Q9P2D1 2997 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 VPS13AQ96RL7 3174 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 PTPRZ1P23471 2315 aaPredicted RBP0.96□□□□□ -2.26
CD44-216ENST00000525293 FCGBPQ9Y6R7 5405 aaPredicted RBP0.96□□□□□ -2.26
CD44-216ENST00000525293 WDR87Q6ZQQ6 2873 aa0.96□□□□□ -2.26
CD44-216ENST00000525293 PTPRQQ9UMZ3 2332 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 DMDP11532 3685 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 TRIOO75962 3097 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 SPINK1P00995 79 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 APELAP0DMC3 54 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 DEFB131AP59861 70 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 KRTAP12-1P59990 96 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 DEFB103AP81534 67 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 CNTRLQ7Z7A1 2325 aa0.95□□□□□ -2.26
CD44-216ENST00000525293 PRRC2CQ9Y520 2896 aaKnown RBP0.94□□□□□ -2.26
CD44-216ENST00000525293 WDFY3Q8IZQ1 3526 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 ACACAQ13085 2346 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 AHCTF1Q8WYP5 2266 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 DEFB1P60022 68 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 S4R3F8 94 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 SPTBN2O15020 2390 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms