RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 KMT2BQ9UMN6 2715 aaPredicted RBP7.49□□□□□ -1.21
TCOF1-214ENST00000515035 HIVEP1P15822 2718 aa7.49□□□□□ -1.21
TCOF1-214ENST00000515035 A8MUU9 505 aa7.48□□□□□ -1.21
TCOF1-214ENST00000515035 LRBAP50851 2863 aa7.46□□□□□ -1.22
TCOF1-214ENST00000515035 FRYLO94915 3013 aa7.45□□□□□ -1.22
TCOF1-214ENST00000515035 BOD1L1Q8NFC6 3051 aa7.45□□□□□ -1.22
TCOF1-214ENST00000515035 TNRC18O15417 2968 aaPredicted RBP7.44□□□□□ -1.22
TCOF1-214ENST00000515035 DMXL2Q8TDJ6 3036 aa7.44□□□□□ -1.22
TCOF1-214ENST00000515035 ASH1LQ9NR48 2969 aaKnown RBP7.44□□□□□ -1.22
TCOF1-214ENST00000515035 TACC2O95359 2948 aa7.43□□□□□ -1.22
TCOF1-214ENST00000515035 RPS29P62273 56 aaKnown RBP7.43□□□□□ -1.22
TCOF1-214ENST00000515035 SPTBN5Q9NRC6 3674 aaKnown RBP7.42□□□□□ -1.22
TCOF1-214ENST00000515035 KRTAP13-1Q8IUC0 172 aa7.41□□□□□ -1.22
TCOF1-214ENST00000515035 APCP25054 2843 aa7.41□□□□□ -1.22
TCOF1-214ENST00000515035 COL12A1Q99715 3063 aa7.4□□□□□ -1.22
TCOF1-214ENST00000515035 KRTAP13-2Q52LG2 175 aa7.39□□□□□ -1.23
TCOF1-214ENST00000515035 TENM4Q6N022 2769 aa7.37□□□□□ -1.23
TCOF1-214ENST00000515035 UTP20O75691 2785 aaKnown RBP7.37□□□□□ -1.23
TCOF1-214ENST00000515035 REV3LO60673 3130 aa7.35□□□□□ -1.23
TCOF1-214ENST00000515035 C10orf95Q9H7T3 257 aa7.32□□□□□ -1.24
TCOF1-214ENST00000515035 NIPBLQ6KC79 2804 aaeCLIP7.32□□□□□ -1.243e-7■■■■■ 27.8
TCOF1-214ENST00000515035 ZZEF1O43149 2961 aa7.3□□□□□ -1.24
TCOF1-214ENST00000515035 TNP1P09430 55 aa7.29□□□□□ -1.24
TCOF1-214ENST00000515035 SPEGQ15772 3267 aa7.28□□□□□ -1.24
TCOF1-214ENST00000515035 CFAP47Q6ZTR5 3102 aa7.25□□□□□ -1.25
TCOF1-214ENST00000515035 ZANQ9Y493 2812 aa7.25□□□□□ -1.25
TCOF1-214ENST00000515035 CELSR2Q9HCU4 2923 aa7.25□□□□□ -1.25
TCOF1-214ENST00000515035 H0YAA0 97 aa7.19□□□□□ -1.26
TCOF1-214ENST00000515035 MYO15AQ9UKN7 3530 aa7.18□□□□□ -1.26
TCOF1-214ENST00000515035 PP632Q6XCG6 107 aa7.17□□□□□ -1.26
TCOF1-214ENST00000515035 HRNRQ86YZ3 2850 aaPredicted RBP7.16□□□□□ -1.26
TCOF1-214ENST00000515035 P0C880 135 aa7.16□□□□□ -1.26
TCOF1-214ENST00000515035 DCHS2Q6V1P9 2916 aa7.14□□□□□ -1.27
TCOF1-214ENST00000515035 USP34Q70CQ2 3546 aa7.11□□□□□ -1.27
TCOF1-214ENST00000515035 CRYBG3Q68DQ2 2970 aa7.1□□□□□ -1.27
TCOF1-214ENST00000515035 DMXL1Q9Y485 3027 aa7.1□□□□□ -1.27
TCOF1-214ENST00000515035 NF1P21359 2839 aa7.07□□□□□ -1.28
TCOF1-214ENST00000515035 FBN2P35556 2912 aa7.07□□□□□ -1.28
TCOF1-214ENST00000515035 TENM3Q9P273 2699 aa7.06□□□□□ -1.28
TCOF1-214ENST00000515035 LOC400499M0QZD8 3231 aa7.04□□□□□ -1.28
TCOF1-214ENST00000515035 KRTAP10-8P60410 259 aa7.04□□□□□ -1.28
TCOF1-214ENST00000515035 MUC3AQ02505 3323 aa7□□□□□ -1.29
TCOF1-214ENST00000515035 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
TCOF1-214ENST00000515035 XP32Q5T750 250 aa6.94□□□□□ -1.3
TCOF1-214ENST00000515035 MXRA5Q9NR99 2828 aa6.92□□□□□ -1.3
TCOF1-214ENST00000515035 TGP01266 2768 aa6.92□□□□□ -1.3
TCOF1-214ENST00000515035 DMDP11532 3685 aa6.89□□□□□ -1.31
TCOF1-214ENST00000515035 TENM1Q9UKZ4 2725 aa6.85□□□□□ -1.31
TCOF1-214ENST00000515035 TPRXLQ17RH7 258 aa6.84□□□□□ -1.31
TCOF1-214ENST00000515035 A0A1B0GVY2 172 aa6.82□□□□□ -1.32
TCOF1-214ENST00000515035 TENM2Q9NT68 2774 aa6.82□□□□□ -1.32
TCOF1-214ENST00000515035 ASPMQ8IZT6 3477 aa6.81□□□□□ -1.32
TCOF1-214ENST00000515035 WDFY3Q8IZQ1 3526 aa6.79□□□□□ -1.32
TCOF1-214ENST00000515035 LAMA5O15230 3695 aa6.79□□□□□ -1.32
TCOF1-214ENST00000515035 CELSR1Q9NYQ6 3014 aa6.78□□□□□ -1.32
TCOF1-214ENST00000515035 KRTAP13-3Q3SY46 172 aa6.78□□□□□ -1.32
TCOF1-214ENST00000515035 DCHS1Q96JQ0 3298 aa6.71□□□□□ -1.34
TCOF1-214ENST00000515035 PDZD2O15018 2839 aa6.7□□□□□ -1.34
TCOF1-214ENST00000515035 RELNP78509 3460 aa6.7□□□□□ -1.34
TCOF1-214ENST00000515035 KRTAP12-2P59991 146 aa6.68□□□□□ -1.34
TCOF1-214ENST00000515035 KRTAP10-10P60014 251 aa6.64□□□□□ -1.35
TCOF1-214ENST00000515035 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
TCOF1-214ENST00000515035 PKD1L1Q8TDX9 2849 aa6.6□□□□□ -1.35
TCOF1-214ENST00000515035 ZFHX4Q86UP3 3567 aa6.57□□□□□ -1.36
TCOF1-214ENST00000515035 KRTAP12-1P59990 96 aa6.56□□□□□ -1.36
TCOF1-214ENST00000515035 KRTAP13-4Q3LI77 160 aa6.56□□□□□ -1.36
TCOF1-214ENST00000515035 VWFP04275 2813 aa6.52□□□□□ -1.37
TCOF1-214ENST00000515035 SMG1Q96Q15 3661 aaKnown RBP6.47□□□□□ -1.37
TCOF1-214ENST00000515035 OTOGQ6ZRI0 2925 aa6.46□□□□□ -1.37
TCOF1-214ENST00000515035 CSMD1Q96PZ7 3565 aa6.46□□□□□ -1.37
TCOF1-214ENST00000515035 KRTAP3-1Q9BYR8 98 aa6.44□□□□□ -1.38
TCOF1-214ENST00000515035 SRRM2Q9UQ35 2752 aaKnown RBP6.4□□□□□ -1.38
TCOF1-214ENST00000515035 FBN1P35555 2871 aaKnown RBP6.4□□□□□ -1.38
TCOF1-214ENST00000515035 KRTAP10-6P60371 365 aaPredicted RBP6.33□□□□□ -1.4
TCOF1-214ENST00000515035 BSNQ9UPA5 3926 aa6.3□□□□□ -1.4
TCOF1-214ENST00000515035 NBPF19A0A087WUL8 3843 aa6.29□□□□□ -1.4
TCOF1-214ENST00000515035 KRTAP15-1Q3LI76 137 aa6.27□□□□□ -1.41
TCOF1-214ENST00000515035 FBN3Q75N90 2809 aa6.27□□□□□ -1.41
TCOF1-214ENST00000515035 SPENQ96T58 3664 aaKnown RBP6.26□□□□□ -1.41
TCOF1-214ENST00000515035 SVEP1Q4LDE5 3571 aa6.21□□□□□ -1.41
TCOF1-214ENST00000515035 INE1O15225 51 aa6.2□□□□□ -1.42
TCOF1-214ENST00000515035 MEGF8Q7Z7M0 2845 aa6.18□□□□□ -1.42
TCOF1-214ENST00000515035 ZFHX3Q15911 3703 aa6.17□□□□□ -1.42
TCOF1-214ENST00000515035 ANK3Q12955 4377 aaKnown RBP6.16□□□□□ -1.42
TCOF1-214ENST00000515035 CSMD2Q7Z408 3487 aa6.15□□□□□ -1.42
TCOF1-214ENST00000515035 CUBNO60494 3623 aa6.13□□□□□ -1.43
TCOF1-214ENST00000515035 MT1HL1P0DM35 61 aa6.12□□□□□ -1.43
TCOF1-214ENST00000515035 COL7A1Q02388 2944 aa6.09□□□□□ -1.43
TCOF1-214ENST00000515035 KRTAP3-2Q9BYR7 98 aa6.07□□□□□ -1.44
TCOF1-214ENST00000515035 KRTAP3-3Q9BYR6 98 aa6□□□□□ -1.45
TCOF1-214ENST00000515035 TRRAPQ9Y4A5 3859 aa5.99□□□□□ -1.45
TCOF1-214ENST00000515035 KRTAP10-4P60372 401 aaPredicted RBP5.97□□□□□ -1.45
TCOF1-214ENST00000515035 KRTAP4-5Q9BYR2 181 aa5.94□□□□□ -1.46
TCOF1-214ENST00000515035 KRTAP10-12P60413 245 aa5.89□□□□□ -1.47
TCOF1-214ENST00000515035 VPS13CQ709C8 3753 aa5.87□□□□□ -1.47
TCOF1-214ENST00000515035 CRCT1Q9UGL9 99 aa5.8□□□□□ -1.48
TCOF1-214ENST00000515035 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
TCOF1-214ENST00000515035 KRTAP23-1A1A580 65 aa5.77□□□□□ -1.49
TCOF1-214ENST00000515035 HUWE1Q7Z6Z7 4374 aaKnown RBP5.77□□□□□ -1.49
TCOF1-214ENST00000515035 ZNF469Q96JG9 3925 aaPredicted RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms