RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 NBEAL1Q6ZS30 2694 aa3.99□□□□□ -1.77
UBE2D3-224ENST00000508474 CHD6Q8TD26 2715 aa3.98□□□□□ -1.77
UBE2D3-224ENST00000508474 Q5VSD8 79 aa3.98□□□□□ -1.77
UBE2D3-224ENST00000508474 CFAP47Q6ZTR5 3102 aa3.98□□□□□ -1.77
UBE2D3-224ENST00000508474 C10orf95Q9H7T3 257 aa3.97□□□□□ -1.77
UBE2D3-224ENST00000508474 LRBAP50851 2863 aa3.96□□□□□ -1.78
UBE2D3-224ENST00000508474 TNP1P09430 55 aa3.95□□□□□ -1.78
UBE2D3-224ENST00000508474 IGSF10Q6WRI0 2623 aa3.95□□□□□ -1.78
UBE2D3-224ENST00000508474 MAP1AP78559 2803 aaPredicted RBP3.94□□□□□ -1.78
UBE2D3-224ENST00000508474 FLG2Q5D862 2391 aaPredicted RBP3.94□□□□□ -1.78
UBE2D3-224ENST00000508474 ASPMQ8IZT6 3477 aa3.93□□□□□ -1.78
UBE2D3-224ENST00000508474 HECTD1Q9ULT8 2610 aa3.92□□□□□ -1.78
UBE2D3-224ENST00000508474 FLNCQ14315 2725 aa3.92□□□□□ -1.78
UBE2D3-224ENST00000508474 LAMA5O15230 3695 aa3.91□□□□□ -1.78
UBE2D3-224ENST00000508474 TACC2O95359 2948 aa3.91□□□□□ -1.78
UBE2D3-224ENST00000508474 ZZEF1O43149 2961 aa3.91□□□□□ -1.78
UBE2D3-224ENST00000508474 KRTAP13-3Q3SY46 172 aa3.91□□□□□ -1.78
UBE2D3-224ENST00000508474 KALRNO60229 2985 aa3.91□□□□□ -1.78
UBE2D3-224ENST00000508474 MAST4O15021 2626 aa3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 COL12A1Q99715 3063 aa3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 NBEAL2Q6ZNJ1 2754 aa3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 CFAP46Q8IYW2 2715 aa3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 HELZ2Q9BYK8 2649 aaKnown RBP3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 HRNRQ86YZ3 2850 aaPredicted RBP3.9□□□□□ -1.79
UBE2D3-224ENST00000508474 DCHS1Q96JQ0 3298 aa3.89□□□□□ -1.79
UBE2D3-224ENST00000508474 ITPR1Q14643 2758 aa3.87□□□□□ -1.79
UBE2D3-224ENST00000508474 NOTCH1P46531 2555 aa3.86□□□□□ -1.79
UBE2D3-224ENST00000508474 STAB2Q8WWQ8 2551 aa3.84□□□□□ -1.8
UBE2D3-224ENST00000508474 KRTAP1-4P0C5Y4 121 aa3.83□□□□□ -1.8
UBE2D3-224ENST00000508474 STAB1Q9NY15 2570 aa3.83□□□□□ -1.8
UBE2D3-224ENST00000508474 TEX15Q9BXT5 2789 aa3.82□□□□□ -1.8
UBE2D3-224ENST00000508474 SETXQ7Z333 2677 aaKnown RBP3.82□□□□□ -1.8
UBE2D3-224ENST00000508474 DCHS2Q6V1P9 2916 aa3.81□□□□□ -1.8
UBE2D3-224ENST00000508474 UTP20O75691 2785 aaKnown RBP3.81□□□□□ -1.8
UBE2D3-224ENST00000508474 BAHCC1Q9P281 2608 aa3.8□□□□□ -1.8
UBE2D3-224ENST00000508474 KRTAP10-8P60410 259 aa3.8□□□□□ -1.8
UBE2D3-224ENST00000508474 FLNBO75369 2602 aaKnown RBP3.8□□□□□ -1.8
UBE2D3-224ENST00000508474 TEP1Q99973 2627 aaKnown RBP3.8□□□□□ -1.8
UBE2D3-224ENST00000508474 ASH1LQ9NR48 2969 aaKnown RBP3.79□□□□□ -1.8
UBE2D3-224ENST00000508474 ZANQ9Y493 2812 aa3.79□□□□□ -1.8
UBE2D3-224ENST00000508474 COL6A5A8TX70 2615 aa3.79□□□□□ -1.8
UBE2D3-224ENST00000508474 SMG1Q96Q15 3661 aaKnown RBP3.79□□□□□ -1.8
UBE2D3-224ENST00000508474 CRYBG3Q68DQ2 2970 aa3.78□□□□□ -1.8
UBE2D3-224ENST00000508474 TPRXLQ17RH7 258 aa3.76□□□□□ -1.81
UBE2D3-224ENST00000508474 XP32Q5T750 250 aa3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 KMT2BQ9UMN6 2715 aaPredicted RBP3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 UBR5O95071 2799 aaPredicted RBP3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 APCP25054 2843 aa3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 PRO2289Q9P1D8 64 aa3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 NSD1Q96L73 2696 aaPredicted RBP3.75□□□□□ -1.81
UBE2D3-224ENST00000508474 CELSR2Q9HCU4 2923 aa3.74□□□□□ -1.81
UBE2D3-224ENST00000508474 ITPR2Q14571 2701 aa3.73□□□□□ -1.81
UBE2D3-224ENST00000508474 KRTAP12-2P59991 146 aa3.71□□□□□ -1.82
UBE2D3-224ENST00000508474 FBN2P35556 2912 aa3.71□□□□□ -1.82
UBE2D3-224ENST00000508474 AKAP9Q99996 3911 aa3.69□□□□□ -1.82
UBE2D3-224ENST00000508474 MXRA5Q9NR99 2828 aa3.69□□□□□ -1.82
UBE2D3-224ENST00000508474 CELSR1Q9NYQ6 3014 aa3.69□□□□□ -1.82
UBE2D3-224ENST00000508474 CSMD1Q96PZ7 3565 aa3.68□□□□□ -1.82
UBE2D3-224ENST00000508474 NF1P21359 2839 aa3.67□□□□□ -1.82
UBE2D3-224ENST00000508474 KRTAP12-1P59990 96 aa3.67□□□□□ -1.82
UBE2D3-224ENST00000508474 KRTAP13-4Q3LI77 160 aa3.67□□□□□ -1.82
UBE2D3-224ENST00000508474 KRTAP15-1Q3LI76 137 aa3.66□□□□□ -1.82
UBE2D3-224ENST00000508474 SVEP1Q4LDE5 3571 aa3.64□□□□□ -1.83
UBE2D3-224ENST00000508474 TENM4Q6N022 2769 aa3.63□□□□□ -1.83
UBE2D3-224ENST00000508474 HIVEP1P15822 2718 aa3.62□□□□□ -1.83
UBE2D3-224ENST00000508474 KRTAP3-1Q9BYR8 98 aa3.62□□□□□ -1.83
UBE2D3-224ENST00000508474 NIPBLQ6KC79 2804 aaeCLIP3.6□□□□□ -1.83
UBE2D3-224ENST00000508474 PDZD2O15018 2839 aa3.59□□□□□ -1.83
UBE2D3-224ENST00000508474 INE1O15225 51 aa3.58□□□□□ -1.84
UBE2D3-224ENST00000508474 KRTAP10-6P60371 365 aaPredicted RBP3.58□□□□□ -1.84
UBE2D3-224ENST00000508474 CSMD2Q7Z408 3487 aa3.57□□□□□ -1.84
UBE2D3-224ENST00000508474 ZFHX3Q15911 3703 aa3.57□□□□□ -1.84
UBE2D3-224ENST00000508474 TGP01266 2768 aa3.56□□□□□ -1.84
UBE2D3-224ENST00000508474 VPS13CQ709C8 3753 aa3.51□□□□□ -1.85
UBE2D3-224ENST00000508474 A0A1B0GVY2 172 aa3.51□□□□□ -1.85
UBE2D3-224ENST00000508474 OTOGQ6ZRI0 2925 aa3.5□□□□□ -1.85
UBE2D3-224ENST00000508474 TENM1Q9UKZ4 2725 aa3.5□□□□□ -1.85
UBE2D3-224ENST00000508474 VWFP04275 2813 aa3.48□□□□□ -1.85
UBE2D3-224ENST00000508474 KRTAP10-10P60014 251 aa3.44□□□□□ -1.86
UBE2D3-224ENST00000508474 KRTAP3-2Q9BYR7 98 aa3.44□□□□□ -1.86
UBE2D3-224ENST00000508474 CUBNO60494 3623 aa3.43□□□□□ -1.86
UBE2D3-224ENST00000508474 ZNF469Q96JG9 3925 aaPredicted RBP3.43□□□□□ -1.86
UBE2D3-224ENST00000508474 ANK3Q12955 4377 aaKnown RBP3.42□□□□□ -1.86
UBE2D3-224ENST00000508474 TRRAPQ9Y4A5 3859 aa3.41□□□□□ -1.86
UBE2D3-224ENST00000508474 TENM3Q9P273 2699 aa3.41□□□□□ -1.86
UBE2D3-224ENST00000508474 KRTAP3-3Q9BYR6 98 aa3.39□□□□□ -1.87
UBE2D3-224ENST00000508474 KRTAP23-1A1A580 65 aa3.39□□□□□ -1.87
UBE2D3-224ENST00000508474 TENM2Q9NT68 2774 aa3.36□□□□□ -1.87
UBE2D3-224ENST00000508474 CSMD3Q7Z407 3707 aa3.36□□□□□ -1.87
UBE2D3-224ENST00000508474 FBN1P35555 2871 aaKnown RBP3.35□□□□□ -1.87
UBE2D3-224ENST00000508474 PKD1L1Q8TDX9 2849 aa3.33□□□□□ -1.88
UBE2D3-224ENST00000508474 LYSTQ99698 3801 aa3.31□□□□□ -1.88
UBE2D3-224ENST00000508474 ANK2Q01484 3957 aa3.29□□□□□ -1.88
UBE2D3-224ENST00000508474 LCE2DQ5TA82 110 aaPredicted RBP3.27□□□□□ -1.89
UBE2D3-224ENST00000508474 PKHD1L1Q86WI1 4243 aa3.24□□□□□ -1.89
UBE2D3-224ENST00000508474 KRTAP10-12P60413 245 aa3.18□□□□□ -1.9
UBE2D3-224ENST00000508474 LCE2AQ5TA79 106 aaPredicted RBP3.17□□□□□ -1.9
UBE2D3-224ENST00000508474 KRTAP12-3P60328 96 aa3.16□□□□□ -1.9
UBE2D3-224ENST00000508474 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
UBE2D3-224ENST00000508474 HUWE1Q7Z6Z7 4374 aaKnown RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms