RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 ADGRG4Q8IZF6 3080 aa10.5□□□□□ -0.73
COL27A1-207ENST00000494090 VCANP13611 3396 aa10.49□□□□□ -0.73
COL27A1-207ENST00000494090 APCP25054 2843 aa10.49□□□□□ -0.73
COL27A1-207ENST00000494090 SZT2Q5T011 3432 aa10.48□□□□□ -0.73
COL27A1-207ENST00000494090 COL12A1Q99715 3063 aa10.47□□□□□ -0.73
COL27A1-207ENST00000494090 TNP1P09430 55 aa10.46□□□□□ -0.74
COL27A1-207ENST00000494090 DNAH14Q0VDD8 3507 aa10.44□□□□□ -0.74
COL27A1-207ENST00000494090 FRYLO94915 3013 aa10.4□□□□□ -0.74
COL27A1-207ENST00000494090 DMXL2Q8TDJ6 3036 aa10.4□□□□□ -0.75
COL27A1-207ENST00000494090 BOD1L1Q8NFC6 3051 aa10.39□□□□□ -0.75
COL27A1-207ENST00000494090 HIVEP1P15822 2718 aa10.39□□□□□ -0.75
COL27A1-207ENST00000494090 ASH1LQ9NR48 2969 aaKnown RBP10.36□□□□□ -0.75
COL27A1-207ENST00000494090 NIPBLQ6KC79 2804 aaeCLIP10.35□□□□□ -0.75
COL27A1-207ENST00000494090 COL6A3P12111 3177 aa10.34□□□□□ -0.75
COL27A1-207ENST00000494090 KRTAP16-1A8MUX0 517 aa10.34□□□□□ -0.75
COL27A1-207ENST00000494090 KRTAP1-4P0C5Y4 121 aa10.31□□□□□ -0.76
COL27A1-207ENST00000494090 ZZEF1O43149 2961 aa10.24□□□□□ -0.77
COL27A1-207ENST00000494090 XP32Q5T750 250 aa10.23□□□□□ -0.77
COL27A1-207ENST00000494090 PP632Q6XCG6 107 aa10.23□□□□□ -0.77
COL27A1-207ENST00000494090 CELSR2Q9HCU4 2923 aa10.21□□□□□ -0.78
COL27A1-207ENST00000494090 EYSQ5T1H1 3165 aa10.19□□□□□ -0.78
COL27A1-207ENST00000494090 NDUFAF8A1L188 74 aa10.17□□□□□ -0.78
COL27A1-207ENST00000494090 TPRXLQ17RH7 258 aa10.15□□□□□ -0.78
COL27A1-207ENST00000494090 TENM4Q6N022 2769 aa10.14□□□□□ -0.79
COL27A1-207ENST00000494090 ZANQ9Y493 2812 aa10.13□□□□□ -0.79
COL27A1-207ENST00000494090 HRNRQ86YZ3 2850 aaPredicted RBP10.12□□□□□ -0.79
COL27A1-207ENST00000494090 REV3LO60673 3130 aa10.1□□□□□ -0.79
COL27A1-207ENST00000494090 C10orf95Q9H7T3 257 aa10.09□□□□□ -0.79
COL27A1-207ENST00000494090 DCHS2Q6V1P9 2916 aa10.09□□□□□ -0.79
COL27A1-207ENST00000494090 CFAP47Q6ZTR5 3102 aa10.08□□□□□ -0.8
COL27A1-207ENST00000494090 KRTAP10-8P60410 259 aa10.07□□□□□ -0.8
COL27A1-207ENST00000494090 H0YAA0 97 aa10.07□□□□□ -0.8
COL27A1-207ENST00000494090 CRYBG3Q68DQ2 2970 aa10.02□□□□□ -0.81
COL27A1-207ENST00000494090 SPTBN5Q9NRC6 3674 aaKnown RBP9.98□□□□□ -0.81
COL27A1-207ENST00000494090 TNRC18O15417 2968 aaPredicted RBP9.97□□□□□ -0.81
COL27A1-207ENST00000494090 USP34Q70CQ2 3546 aa9.97□□□□□ -0.81
COL27A1-207ENST00000494090 A0A1B0GVY2 172 aa9.94□□□□□ -0.82
COL27A1-207ENST00000494090 PRO2289Q9P1D8 64 aa9.91□□□□□ -0.82
COL27A1-207ENST00000494090 KRTAP13-3Q3SY46 172 aa9.9□□□□□ -0.82
COL27A1-207ENST00000494090 FBN2P35556 2912 aa9.89□□□□□ -0.83
COL27A1-207ENST00000494090 DMXL1Q9Y485 3027 aa9.89□□□□□ -0.83
COL27A1-207ENST00000494090 KRTAP10-10P60014 251 aa9.88□□□□□ -0.83
COL27A1-207ENST00000494090 SPEGQ15772 3267 aa9.82□□□□□ -0.84
COL27A1-207ENST00000494090 NF1P21359 2839 aa9.8□□□□□ -0.84
COL27A1-207ENST00000494090 P0C880 135 aa9.8□□□□□ -0.84
COL27A1-207ENST00000494090 LOC400499M0QZD8 3231 aa9.76□□□□□ -0.85
COL27A1-207ENST00000494090 TENM1Q9UKZ4 2725 aa9.65□□□□□ -0.86
COL27A1-207ENST00000494090 TENM3Q9P273 2699 aa9.65□□□□□ -0.87
COL27A1-207ENST00000494090 CELSR1Q9NYQ6 3014 aa9.63□□□□□ -0.87
COL27A1-207ENST00000494090 MXRA5Q9NR99 2828 aa9.63□□□□□ -0.87
COL27A1-207ENST00000494090 TGP01266 2768 aa9.61□□□□□ -0.87
COL27A1-207ENST00000494090 TENM2Q9NT68 2774 aa9.56□□□□□ -0.88
COL27A1-207ENST00000494090 KRTAP12-2P59991 146 aa9.43□□□□□ -0.9
COL27A1-207ENST00000494090 MYO15AQ9UKN7 3530 aa9.4□□□□□ -0.9
COL27A1-207ENST00000494090 WDFY3Q8IZQ1 3526 aa9.34□□□□□ -0.91
COL27A1-207ENST00000494090 KRTAP3-1Q9BYR8 98 aa9.34□□□□□ -0.91
COL27A1-207ENST00000494090 RELNP78509 3460 aa9.34□□□□□ -0.91
COL27A1-207ENST00000494090 PDZD2O15018 2839 aa9.33□□□□□ -0.92
COL27A1-207ENST00000494090 KRTAP13-4Q3LI77 160 aa9.31□□□□□ -0.92
COL27A1-207ENST00000494090 KRTAP12-1P59990 96 aa9.29□□□□□ -0.92
COL27A1-207ENST00000494090 PKD1L1Q8TDX9 2849 aa9.22□□□□□ -0.93
COL27A1-207ENST00000494090 DCHS1Q96JQ0 3298 aa9.19□□□□□ -0.94
COL27A1-207ENST00000494090 VWFP04275 2813 aa9.1□□□□□ -0.95
COL27A1-207ENST00000494090 ASPMQ8IZT6 3477 aa9.1□□□□□ -0.95
COL27A1-207ENST00000494090 KRTAP10-6P60371 365 aaPredicted RBP9.08□□□□□ -0.96
COL27A1-207ENST00000494090 ZFHX4Q86UP3 3567 aa9.08□□□□□ -0.96
COL27A1-207ENST00000494090 OTOGQ6ZRI0 2925 aa9.01□□□□□ -0.97
COL27A1-207ENST00000494090 LAMA5O15230 3695 aa8.98□□□□□ -0.97
COL27A1-207ENST00000494090 CSMD1Q96PZ7 3565 aa8.98□□□□□ -0.97
COL27A1-207ENST00000494090 FBN1P35555 2871 aaKnown RBP8.96□□□□□ -0.97
COL27A1-207ENST00000494090 NBPF19A0A087WUL8 3843 aa8.95□□□□□ -0.98
COL27A1-207ENST00000494090 ANK3Q12955 4377 aaKnown RBP8.93□□□□□ -0.98
COL27A1-207ENST00000494090 KRTAP15-1Q3LI76 137 aa8.92□□□□□ -0.98
COL27A1-207ENST00000494090 FBN3Q75N90 2809 aa8.87□□□□□ -0.99
COL27A1-207ENST00000494090 SMG1Q96Q15 3661 aaKnown RBP8.84□□□□□ -0.99
COL27A1-207ENST00000494090 MT1HL1P0DM35 61 aa8.79□□□□□ -1
COL27A1-207ENST00000494090 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
COL27A1-207ENST00000494090 KRTAP3-3Q9BYR6 98 aa8.76□□□□□ -1.01
COL27A1-207ENST00000494090 MEGF8Q7Z7M0 2845 aa8.75□□□□□ -1.01
COL27A1-207ENST00000494090 DMDP11532 3685 aa8.71□□□□□ -1.01
COL27A1-207ENST00000494090 KRTAP10-4P60372 401 aaPredicted RBP8.65□□□□□ -1.02
COL27A1-207ENST00000494090 ZFHX3Q15911 3703 aa8.64□□□□□ -1.03
COL27A1-207ENST00000494090 SVEP1Q4LDE5 3571 aa8.61□□□□□ -1.03
COL27A1-207ENST00000494090 SRRM2Q9UQ35 2752 aaKnown RBP8.6□□□□□ -1.03
COL27A1-207ENST00000494090 KRTAP10-12P60413 245 aa8.56□□□□□ -1.04
COL27A1-207ENST00000494090 TRRAPQ9Y4A5 3859 aa8.55□□□□□ -1.04
COL27A1-207ENST00000494090 COL7A1Q02388 2944 aa8.51□□□□□ -1.05
COL27A1-207ENST00000494090 CSMD2Q7Z408 3487 aa8.48□□□□□ -1.05
COL27A1-207ENST00000494090 MUC3AQ02505 3323 aa8.48□□□□□ -1.05
COL27A1-207ENST00000494090 HUWE1Q7Z6Z7 4374 aaKnown RBP8.47□□□□□ -1.05
COL27A1-207ENST00000494090 INE1O15225 51 aa8.46□□□□□ -1.05
COL27A1-207ENST00000494090 SPENQ96T58 3664 aaKnown RBP8.45□□□□□ -1.06
COL27A1-207ENST00000494090 KRTAP23-1A1A580 65 aa8.37□□□□□ -1.07
COL27A1-207ENST00000494090 KRTAP4-5Q9BYR2 181 aa8.34□□□□□ -1.07
COL27A1-207ENST00000494090 CUBNO60494 3623 aa8.33□□□□□ -1.08
COL27A1-207ENST00000494090 BSNQ9UPA5 3926 aa8.32□□□□□ -1.08
COL27A1-207ENST00000494090 KRTAP12-3P60328 96 aa8.3□□□□□ -1.08
COL27A1-207ENST00000494090 CRCT1Q9UGL9 99 aa8.24□□□□□ -1.09
COL27A1-207ENST00000494090 ALMS1Q8TCU4 4167 aa8.22□□□□□ -1.09
COL27A1-207ENST00000494090 LORP23490 312 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms