RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 FRYQ5TBA9 3013 aa10.94□□□□□ -0.66
RNF40-203ENST00000493683 MYO15AQ9UKN7 3530 aa10.89□□□□□ -0.67
RNF40-203ENST00000493683 KMT2BQ9UMN6 2715 aaPredicted RBP10.89□□□□□ -0.67
RNF40-203ENST00000493683 SPTBN5Q9NRC6 3674 aaKnown RBP10.86□□□□□ -0.67
RNF40-203ENST00000493683 ITPR1Q14643 2758 aa10.85□□□□□ -0.67
RNF40-203ENST00000493683 C10orf95Q9H7T3 257 aa10.83□□□□□ -0.68
RNF40-203ENST00000493683 COL6A3P12111 3177 aa10.77□□□□□ -0.69
RNF40-203ENST00000493683 EYSQ5T1H1 3165 aa10.75□□□□□ -0.69
RNF40-203ENST00000493683 USP34Q70CQ2 3546 aa10.72□□□□□ -0.69
RNF40-203ENST00000493683 KRTAP1-4P0C5Y4 121 aa10.71□□□□□ -0.7
RNF40-203ENST00000493683 BOD1L1Q8NFC6 3051 aa10.7□□□□□ -0.7
RNF40-203ENST00000493683 REV3LO60673 3130 aa10.69□□□□□ -0.7
RNF40-203ENST00000493683 XP32Q5T750 250 aa10.68□□□□□ -0.7
RNF40-203ENST00000493683 KALRNO60229 2985 aa10.68□□□□□ -0.7
RNF40-203ENST00000493683 HIVEP1P15822 2718 aa10.68□□□□□ -0.7
RNF40-203ENST00000493683 H0YAA0 97 aa10.65□□□□□ -0.71
RNF40-203ENST00000493683 TENM4Q6N022 2769 aa10.64□□□□□ -0.71
RNF40-203ENST00000493683 P0C880 135 aa10.62□□□□□ -0.71
RNF40-203ENST00000493683 ADGRG4Q8IZF6 3080 aa10.62□□□□□ -0.71
RNF40-203ENST00000493683 APCP25054 2843 aa10.59□□□□□ -0.71
RNF40-203ENST00000493683 UTP20O75691 2785 aaKnown RBP10.58□□□□□ -0.72
RNF40-203ENST00000493683 NIPBLQ6KC79 2804 aaeCLIP10.57□□□□□ -0.72
RNF40-203ENST00000493683 FLNCQ14315 2725 aa10.57□□□□□ -0.72
RNF40-203ENST00000493683 TPRXLQ17RH7 258 aa10.55□□□□□ -0.72
RNF40-203ENST00000493683 KRTAP10-8P60410 259 aa10.54□□□□□ -0.72
RNF40-203ENST00000493683 TACC2O95359 2948 aa10.48□□□□□ -0.73
RNF40-203ENST00000493683 LRBAP50851 2863 aa10.48□□□□□ -0.73
RNF40-203ENST00000493683 WDFY3Q8IZQ1 3526 aa10.46□□□□□ -0.74
RNF40-203ENST00000493683 CFAP47Q6ZTR5 3102 aa10.44□□□□□ -0.74
RNF40-203ENST00000493683 LOC400499M0QZD8 3231 aa10.39□□□□□ -0.75
RNF40-203ENST00000493683 ATMQ13315 3056 aa10.38□□□□□ -0.75
RNF40-203ENST00000493683 ZZEF1O43149 2961 aa10.36□□□□□ -0.75
RNF40-203ENST00000493683 PRO2289Q9P1D8 64 aa10.35□□□□□ -0.75
RNF40-203ENST00000493683 DMXL2Q8TDJ6 3036 aa10.33□□□□□ -0.76
RNF40-203ENST00000493683 KRTAP13-3Q3SY46 172 aa10.32□□□□□ -0.76
RNF40-203ENST00000493683 A0A1B0GVY2 172 aa10.3□□□□□ -0.76
RNF40-203ENST00000493683 ASH1LQ9NR48 2969 aaKnown RBP10.27□□□□□ -0.76
RNF40-203ENST00000493683 KRTAP10-10P60014 251 aa10.26□□□□□ -0.77
RNF40-203ENST00000493683 TENM3Q9P273 2699 aa10.25□□□□□ -0.77
RNF40-203ENST00000493683 COL12A1Q99715 3063 aa10.23□□□□□ -0.77
RNF40-203ENST00000493683 ZFHX4Q86UP3 3567 aa10.21□□□□□ -0.77
RNF40-203ENST00000493683 CELSR2Q9HCU4 2923 aa10.21□□□□□ -0.77
RNF40-203ENST00000493683 DCHS1Q96JQ0 3298 aa10.2□□□□□ -0.78
RNF40-203ENST00000493683 CRYBG3Q68DQ2 2970 aa10.14□□□□□ -0.79
RNF40-203ENST00000493683 ASPMQ8IZT6 3477 aa10.14□□□□□ -0.79
RNF40-203ENST00000493683 DCHS2Q6V1P9 2916 aa10.1□□□□□ -0.79
RNF40-203ENST00000493683 TNRC18O15417 2968 aaPredicted RBP10.09□□□□□ -0.79
RNF40-203ENST00000493683 DMXL1Q9Y485 3027 aa10.09□□□□□ -0.79
RNF40-203ENST00000493683 TENM1Q9UKZ4 2725 aa10.06□□□□□ -0.8
RNF40-203ENST00000493683 DMDP11532 3685 aa10□□□□□ -0.81
RNF40-203ENST00000493683 CSMD1Q96PZ7 3565 aa9.96□□□□□ -0.81
RNF40-203ENST00000493683 KRTAP13-4Q3LI77 160 aa9.96□□□□□ -0.81
RNF40-203ENST00000493683 HRNRQ86YZ3 2850 aaPredicted RBP9.96□□□□□ -0.81
RNF40-203ENST00000493683 KRTAP12-2P59991 146 aa9.94□□□□□ -0.82
RNF40-203ENST00000493683 SMG1Q96Q15 3661 aaKnown RBP9.93□□□□□ -0.82
RNF40-203ENST00000493683 RELNP78509 3460 aa9.93□□□□□ -0.82
RNF40-203ENST00000493683 LAMA5O15230 3695 aa9.92□□□□□ -0.82
RNF40-203ENST00000493683 NF1P21359 2839 aa9.92□□□□□ -0.82
RNF40-203ENST00000493683 ZANQ9Y493 2812 aa9.88□□□□□ -0.83
RNF40-203ENST00000493683 TENM2Q9NT68 2774 aa9.85□□□□□ -0.83
RNF40-203ENST00000493683 KRTAP12-1P59990 96 aa9.82□□□□□ -0.84
RNF40-203ENST00000493683 TGP01266 2768 aa9.8□□□□□ -0.84
RNF40-203ENST00000493683 MUC3AQ02505 3323 aa9.75□□□□□ -0.85
RNF40-203ENST00000493683 FBN2P35556 2912 aa9.73□□□□□ -0.85
RNF40-203ENST00000493683 SVEP1Q4LDE5 3571 aa9.7□□□□□ -0.86
RNF40-203ENST00000493683 KRTAP3-1Q9BYR8 98 aa9.65□□□□□ -0.87
RNF40-203ENST00000493683 PDZD2O15018 2839 aa9.58□□□□□ -0.88
RNF40-203ENST00000493683 MXRA5Q9NR99 2828 aa9.54□□□□□ -0.88
RNF40-203ENST00000493683 PKD1L1Q8TDX9 2849 aa9.52□□□□□ -0.89
RNF40-203ENST00000493683 SPENQ96T58 3664 aaKnown RBP9.52□□□□□ -0.89
RNF40-203ENST00000493683 CELSR1Q9NYQ6 3014 aa9.5□□□□□ -0.89
RNF40-203ENST00000493683 KRTAP15-1Q3LI76 137 aa9.47□□□□□ -0.89
RNF40-203ENST00000493683 KRTAP10-6P60371 365 aaPredicted RBP9.46□□□□□ -0.89
RNF40-203ENST00000493683 CUBNO60494 3623 aa9.44□□□□□ -0.9
RNF40-203ENST00000493683 VWFP04275 2813 aa9.34□□□□□ -0.91
RNF40-203ENST00000493683 INE1O15225 51 aa9.32□□□□□ -0.92
RNF40-203ENST00000493683 BSNQ9UPA5 3926 aa9.13□□□□□ -0.95
RNF40-203ENST00000493683 KRTAP3-2Q9BYR7 98 aa9.09□□□□□ -0.95
RNF40-203ENST00000493683 SRRM2Q9UQ35 2752 aaKnown RBP9.07□□□□□ -0.96
RNF40-203ENST00000493683 KRTAP3-3Q9BYR6 98 aa9.03□□□□□ -0.96
RNF40-203ENST00000493683 KRTAP23-1A1A580 65 aa9.02□□□□□ -0.97
RNF40-203ENST00000493683 MT1HL1P0DM35 61 aa9.01□□□□□ -0.97
RNF40-203ENST00000493683 KRTAP10-12P60413 245 aa9.01□□□□□ -0.97
RNF40-203ENST00000493683 CSMD2Q7Z408 3487 aa8.99□□□□□ -0.97
RNF40-203ENST00000493683 NBPF19A0A087WUL8 3843 aa8.95□□□□□ -0.98
RNF40-203ENST00000493683 FBN3Q75N90 2809 aa8.95□□□□□ -0.98
RNF40-203ENST00000493683 ZFHX3Q15911 3703 aa8.83□□□□□ -1
RNF40-203ENST00000493683 FBN1P35555 2871 aaKnown RBP8.82□□□□□ -1
RNF40-203ENST00000493683 VPS13CQ709C8 3753 aa8.81□□□□□ -1
RNF40-203ENST00000493683 MEGF8Q7Z7M0 2845 aa8.8□□□□□ -1
RNF40-203ENST00000493683 KRTAP12-3P60328 96 aa8.79□□□□□ -1
RNF40-203ENST00000493683 OTOGQ6ZRI0 2925 aa8.73□□□□□ -1.01
RNF40-203ENST00000493683 KRTAP10-4P60372 401 aaPredicted RBP8.72□□□□□ -1.01
RNF40-203ENST00000493683 ANK3Q12955 4377 aaKnown RBP8.69□□□□□ -1.02
RNF40-203ENST00000493683 COL7A1Q02388 2944 aa8.67□□□□□ -1.02
RNF40-203ENST00000493683 TRRAPQ9Y4A5 3859 aa8.65□□□□□ -1.02
RNF40-203ENST00000493683 CRCT1Q9UGL9 99 aa8.59□□□□□ -1.03
RNF40-203ENST00000493683 LCE3AQ5TA76 89 aa8.59□□□□□ -1.03
RNF40-203ENST00000493683 KRTAP4-5Q9BYR2 181 aa8.49□□□□□ -1.05
RNF40-203ENST00000493683 ZNF469Q96JG9 3925 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms