RNA–Protein interactions for RNA: ENST00000490035.6

LSAMP-205, Transcript of limbic system associated membrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSAMP, Length 9,446 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-205ENST00000490035 USP34Q70CQ2 3546 aa4.78□□□□□ -1.64
LSAMP-205ENST00000490035 BRCA2P51587 3418 aa4.78□□□□□ -1.64
LSAMP-205ENST00000490035 NDUFAF8A1L188 74 aa4.78□□□□□ -1.64
LSAMP-205ENST00000490035 TPRXLQ17RH7 258 aa4.77□□□□□ -1.65
LSAMP-205ENST00000490035 ASH1LQ9NR48 2969 aaKnown RBP4.76□□□□□ -1.65
LSAMP-205ENST00000490035 ADGRG4Q8IZF6 3080 aa4.76□□□□□ -1.65
LSAMP-205ENST00000490035 ZZEF1O43149 2961 aa4.75□□□□□ -1.65
LSAMP-205ENST00000490035 HIVEP1P15822 2718 aa4.75□□□□□ -1.65
LSAMP-205ENST00000490035 PRO2289Q9P1D8 64 aa4.74□□□□□ -1.65
LSAMP-205ENST00000490035 TACC2O95359 2948 aa4.74□□□□□ -1.65
LSAMP-205ENST00000490035 CDH23Q9H251 3354 aa4.73□□□□□ -1.65
LSAMP-205ENST00000490035 CELSR2Q9HCU4 2923 aa4.73□□□□□ -1.65
LSAMP-205ENST00000490035 FREM2Q5SZK8 3169 aa4.73□□□□□ -1.65
LSAMP-205ENST00000490035 DNAH14Q0VDD8 3507 aa4.73□□□□□ -1.65
LSAMP-205ENST00000490035 DMXL2Q8TDJ6 3036 aa4.72□□□□□ -1.65
LSAMP-205ENST00000490035 XP32Q5T750 250 aa4.71□□□□□ -1.66
LSAMP-205ENST00000490035 C10orf95Q9H7T3 257 aa4.71□□□□□ -1.66
LSAMP-205ENST00000490035 COL12A1Q99715 3063 aa4.71□□□□□ -1.66
LSAMP-205ENST00000490035 NBEAQ8NFP9 2946 aa4.71□□□□□ -1.66
LSAMP-205ENST00000490035 TENM1Q9UKZ4 2725 aa4.7□□□□□ -1.66
LSAMP-205ENST00000490035 TNRC18O15417 2968 aaPredicted RBP4.7□□□□□ -1.66
LSAMP-205ENST00000490035 CRYBG3Q68DQ2 2970 aa4.7□□□□□ -1.66
LSAMP-205ENST00000490035 BOD1L1Q8NFC6 3051 aa4.7□□□□□ -1.66
LSAMP-205ENST00000490035 KRTAP1-4P0C5Y4 121 aa4.7□□□□□ -1.66
LSAMP-205ENST00000490035 VCANP13611 3396 aa4.67□□□□□ -1.66
LSAMP-205ENST00000490035 ATMQ13315 3056 aa4.67□□□□□ -1.66
LSAMP-205ENST00000490035 P0C880 135 aa4.66□□□□□ -1.66
LSAMP-205ENST00000490035 COL6A3P12111 3177 aa4.66□□□□□ -1.66
LSAMP-205ENST00000490035 H0YAA0 97 aa4.66□□□□□ -1.66
LSAMP-205ENST00000490035 DCHS2Q6V1P9 2916 aa4.65□□□□□ -1.67
LSAMP-205ENST00000490035 KRTAP10-8P60410 259 aa4.63□□□□□ -1.67
LSAMP-205ENST00000490035 CELSR1Q9NYQ6 3014 aa4.62□□□□□ -1.67
LSAMP-205ENST00000490035 NF1P21359 2839 aa4.62□□□□□ -1.67
LSAMP-205ENST00000490035 TENM4Q6N022 2769 aa4.6□□□□□ -1.67
LSAMP-205ENST00000490035 ZANQ9Y493 2812 aa4.6□□□□□ -1.67
LSAMP-205ENST00000490035 TGP01266 2768 aa4.6□□□□□ -1.67
LSAMP-205ENST00000490035 HRNRQ86YZ3 2850 aaPredicted RBP4.6□□□□□ -1.67
LSAMP-205ENST00000490035 TENM3Q9P273 2699 aa4.58□□□□□ -1.68
LSAMP-205ENST00000490035 KRTAP13-3Q3SY46 172 aa4.58□□□□□ -1.68
LSAMP-205ENST00000490035 SZT2Q5T011 3432 aa4.55□□□□□ -1.68
LSAMP-205ENST00000490035 FBN2P35556 2912 aa4.54□□□□□ -1.68
LSAMP-205ENST00000490035 DMXL1Q9Y485 3027 aa4.54□□□□□ -1.68
LSAMP-205ENST00000490035 CFAP47Q6ZTR5 3102 aa4.51□□□□□ -1.69
LSAMP-205ENST00000490035 SPEGQ15772 3267 aa4.5□□□□□ -1.69
LSAMP-205ENST00000490035 KRTAP10-10P60014 251 aa4.5□□□□□ -1.69
LSAMP-205ENST00000490035 SPTBN5Q9NRC6 3674 aaKnown RBP4.48□□□□□ -1.69
LSAMP-205ENST00000490035 EYSQ5T1H1 3165 aa4.47□□□□□ -1.69
LSAMP-205ENST00000490035 MXRA5Q9NR99 2828 aa4.45□□□□□ -1.7
LSAMP-205ENST00000490035 KRTAP13-4Q3LI77 160 aa4.44□□□□□ -1.7
LSAMP-205ENST00000490035 PDZD2O15018 2839 aa4.43□□□□□ -1.7
LSAMP-205ENST00000490035 A0A1B0GVY2 172 aa4.4□□□□□ -1.71
LSAMP-205ENST00000490035 LOC400499M0QZD8 3231 aa4.39□□□□□ -1.71
LSAMP-205ENST00000490035 NBPF19A0A087WUL8 3843 aa4.33□□□□□ -1.72
LSAMP-205ENST00000490035 KRTAP12-2P59991 146 aa4.32□□□□□ -1.72
LSAMP-205ENST00000490035 TENM2Q9NT68 2774 aa4.32□□□□□ -1.72
LSAMP-205ENST00000490035 KRTAP12-1P59990 96 aa4.31□□□□□ -1.72
LSAMP-205ENST00000490035 PKD1L1Q8TDX9 2849 aa4.29□□□□□ -1.72
LSAMP-205ENST00000490035 VWFP04275 2813 aa4.25□□□□□ -1.73
LSAMP-205ENST00000490035 WDFY3Q8IZQ1 3526 aa4.25□□□□□ -1.73
LSAMP-205ENST00000490035 INE1O15225 51 aa4.23□□□□□ -1.73
LSAMP-205ENST00000490035 MEGF8Q7Z7M0 2845 aa4.18□□□□□ -1.74
LSAMP-205ENST00000490035 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
LSAMP-205ENST00000490035 MYO15AQ9UKN7 3530 aa4.18□□□□□ -1.74
LSAMP-205ENST00000490035 ASPMQ8IZT6 3477 aa4.17□□□□□ -1.74
LSAMP-205ENST00000490035 KRTAP3-1Q9BYR8 98 aa4.17□□□□□ -1.74
LSAMP-205ENST00000490035 COL7A1Q02388 2944 aa4.17□□□□□ -1.74
LSAMP-205ENST00000490035 KRTAP15-1Q3LI76 137 aa4.16□□□□□ -1.74
LSAMP-205ENST00000490035 ZFHX4Q86UP3 3567 aa4.15□□□□□ -1.75
LSAMP-205ENST00000490035 KRTAP10-6P60371 365 aaPredicted RBP4.13□□□□□ -1.75
LSAMP-205ENST00000490035 FBN3Q75N90 2809 aa4.11□□□□□ -1.75
LSAMP-205ENST00000490035 DCHS1Q96JQ0 3298 aa4.1□□□□□ -1.75
LSAMP-205ENST00000490035 LAMA5O15230 3695 aa4.09□□□□□ -1.76
LSAMP-205ENST00000490035 RELNP78509 3460 aa4.08□□□□□ -1.76
LSAMP-205ENST00000490035 ZFHX3Q15911 3703 aa4.08□□□□□ -1.76
LSAMP-205ENST00000490035 SRRM2Q9UQ35 2752 aaKnown RBP4.05□□□□□ -1.76
LSAMP-205ENST00000490035 CSMD1Q96PZ7 3565 aa4.04□□□□□ -1.76
LSAMP-205ENST00000490035 FBN1P35555 2871 aaKnown RBP4.03□□□□□ -1.76
LSAMP-205ENST00000490035 KRTAP10-12P60413 245 aa4□□□□□ -1.77
LSAMP-205ENST00000490035 SPENQ96T58 3664 aaKnown RBP4□□□□□ -1.77
LSAMP-205ENST00000490035 TRRAPQ9Y4A5 3859 aa3.99□□□□□ -1.77
LSAMP-205ENST00000490035 OTOGQ6ZRI0 2925 aa3.96□□□□□ -1.78
LSAMP-205ENST00000490035 KRTAP3-2Q9BYR7 98 aa3.95□□□□□ -1.78
LSAMP-205ENST00000490035 KRTAP3-3Q9BYR6 98 aa3.94□□□□□ -1.78
LSAMP-205ENST00000490035 BSNQ9UPA5 3926 aa3.94□□□□□ -1.78
LSAMP-205ENST00000490035 MT1HL1P0DM35 61 aa3.94□□□□□ -1.78
LSAMP-205ENST00000490035 SMG1Q96Q15 3661 aaKnown RBP3.93□□□□□ -1.78
LSAMP-205ENST00000490035 ALMS1Q8TCU4 4167 aa3.91□□□□□ -1.78
LSAMP-205ENST00000490035 ANK3Q12955 4377 aaKnown RBP3.91□□□□□ -1.78
LSAMP-205ENST00000490035 KRTAP12-3P60328 96 aa3.88□□□□□ -1.79
LSAMP-205ENST00000490035 DMDP11532 3685 aa3.87□□□□□ -1.79
LSAMP-205ENST00000490035 VPS13CQ709C8 3753 aa3.87□□□□□ -1.79
LSAMP-205ENST00000490035 AKAP9Q99996 3911 aa3.83□□□□□ -1.8
LSAMP-205ENST00000490035 KRTAP10-4P60372 401 aaPredicted RBP3.83□□□□□ -1.8
LSAMP-205ENST00000490035 MUC3AQ02505 3323 aa3.82□□□□□ -1.8
LSAMP-205ENST00000490035 SVEP1Q4LDE5 3571 aa3.81□□□□□ -1.8
LSAMP-205ENST00000490035 HUWE1Q7Z6Z7 4374 aaKnown RBP3.81□□□□□ -1.8
LSAMP-205ENST00000490035 DNAH1Q9P2D7 4330 aa3.79□□□□□ -1.8
LSAMP-205ENST00000490035 KRTAP19-4Q3LI73 84 aa3.76□□□□□ -1.81
LSAMP-205ENST00000490035 LCE3AQ5TA76 89 aa3.72□□□□□ -1.81
LSAMP-205ENST00000490035 DNAH3Q8TD57 4116 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms