RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 NSD1Q96L73 2696 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-209ENST00000489180 ASH1LQ9NR48 2969 aaKnown RBP9.74□□□□□ -0.85
NPHP4-209ENST00000489180 NDUFAF8A1L188 74 aa9.71□□□□□ -0.85
NPHP4-209ENST00000489180 BOD1L1Q8NFC6 3051 aa9.71□□□□□ -0.86
NPHP4-209ENST00000489180 C20orf166-AS1Q96NR2 134 aa9.69□□□□□ -0.86
NPHP4-209ENST00000489180 APCP25054 2843 aa9.69□□□□□ -0.86
NPHP4-209ENST00000489180 ADGRG4Q8IZF6 3080 aa9.68□□□□□ -0.86
NPHP4-209ENST00000489180 UTP20O75691 2785 aaKnown RBP9.68□□□□□ -0.86
NPHP4-209ENST00000489180 HIVEP1P15822 2718 aa9.64□□□□□ -0.87
NPHP4-209ENST00000489180 COL12A1Q99715 3063 aa9.64□□□□□ -0.87
NPHP4-209ENST00000489180 FLNCQ14315 2725 aa9.64□□□□□ -0.87
NPHP4-209ENST00000489180 CFAP47Q6ZTR5 3102 aa9.63□□□□□ -0.87
NPHP4-209ENST00000489180 FRYLO94915 3013 aa9.59□□□□□ -0.87
NPHP4-209ENST00000489180 REV3LO60673 3130 aa9.52□□□□□ -0.89
NPHP4-209ENST00000489180 C10orf95Q9H7T3 257 aa9.48□□□□□ -0.89
NPHP4-209ENST00000489180 CRYBG3Q68DQ2 2970 aa9.47□□□□□ -0.89
NPHP4-209ENST00000489180 ZZEF1O43149 2961 aa9.46□□□□□ -0.89
NPHP4-209ENST00000489180 KMT2BQ9UMN6 2715 aaPredicted RBP9.46□□□□□ -0.89
NPHP4-209ENST00000489180 TNP1P09430 55 aa9.46□□□□□ -0.9
NPHP4-209ENST00000489180 CELSR2Q9HCU4 2923 aa9.42□□□□□ -0.9
NPHP4-209ENST00000489180 SPEGQ15772 3267 aa9.4□□□□□ -0.9
NPHP4-209ENST00000489180 KRTAP1-4P0C5Y4 121 aa9.4□□□□□ -0.91
NPHP4-209ENST00000489180 SPTBN5Q9NRC6 3674 aaKnown RBP9.39□□□□□ -0.91
NPHP4-209ENST00000489180 H0YAA0 97 aa9.37□□□□□ -0.91
NPHP4-209ENST00000489180 NIPBLQ6KC79 2804 aaeCLIP9.34□□□□□ -0.91
NPHP4-209ENST00000489180 XP32Q5T750 250 aa9.33□□□□□ -0.92
NPHP4-209ENST00000489180 EYSQ5T1H1 3165 aa9.32□□□□□ -0.92
NPHP4-209ENST00000489180 TENM4Q6N022 2769 aa9.32□□□□□ -0.92
NPHP4-209ENST00000489180 USP34Q70CQ2 3546 aa9.31□□□□□ -0.92
NPHP4-209ENST00000489180 A0A1B0GVY2 172 aa9.29□□□□□ -0.92
NPHP4-209ENST00000489180 DCHS2Q6V1P9 2916 aa9.28□□□□□ -0.92
NPHP4-209ENST00000489180 ZANQ9Y493 2812 aa9.22□□□□□ -0.93
NPHP4-209ENST00000489180 KRTAP10-8P60410 259 aa9.21□□□□□ -0.94
NPHP4-209ENST00000489180 KRTAP21-3Q3LHN1 58 aa9.19□□□□□ -0.94
NPHP4-209ENST00000489180 TNRC18O15417 2968 aaPredicted RBP9.17□□□□□ -0.94
NPHP4-209ENST00000489180 HRNRQ86YZ3 2850 aaPredicted RBP9.17□□□□□ -0.94
NPHP4-209ENST00000489180 PP632Q6XCG6 107 aa9.15□□□□□ -0.94
NPHP4-209ENST00000489180 P0C880 135 aa9.13□□□□□ -0.95
NPHP4-209ENST00000489180 FBN2P35556 2912 aa9.1□□□□□ -0.95
NPHP4-209ENST00000489180 DMXL1Q9Y485 3027 aa9.09□□□□□ -0.95
NPHP4-209ENST00000489180 MYO15AQ9UKN7 3530 aa9.09□□□□□ -0.95
NPHP4-209ENST00000489180 LOC400499M0QZD8 3231 aa9.08□□□□□ -0.96
NPHP4-209ENST00000489180 TPRXLQ17RH7 258 aa9□□□□□ -0.97
NPHP4-209ENST00000489180 KRTAP13-3Q3SY46 172 aa8.96□□□□□ -0.97
NPHP4-209ENST00000489180 NF1P21359 2839 aa8.96□□□□□ -0.97
NPHP4-209ENST00000489180 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
NPHP4-209ENST00000489180 TGP01266 2768 aa8.9□□□□□ -0.98
NPHP4-209ENST00000489180 TENM1Q9UKZ4 2725 aa8.89□□□□□ -0.99
NPHP4-209ENST00000489180 TENM3Q9P273 2699 aa8.89□□□□□ -0.99
NPHP4-209ENST00000489180 WDFY3Q8IZQ1 3526 aa8.88□□□□□ -0.99
NPHP4-209ENST00000489180 CELSR1Q9NYQ6 3014 aa8.88□□□□□ -0.99
NPHP4-209ENST00000489180 KRTAP12-2P59991 146 aa8.82□□□□□ -1
NPHP4-209ENST00000489180 TENM2Q9NT68 2774 aa8.82□□□□□ -1
NPHP4-209ENST00000489180 RELNP78509 3460 aa8.8□□□□□ -1
NPHP4-209ENST00000489180 ASPMQ8IZT6 3477 aa8.75□□□□□ -1.01
NPHP4-209ENST00000489180 ZFHX4Q86UP3 3567 aa8.73□□□□□ -1.01
NPHP4-209ENST00000489180 DCHS1Q96JQ0 3298 aa8.7□□□□□ -1.02
NPHP4-209ENST00000489180 PRO2289Q9P1D8 64 aa8.7□□□□□ -1.02
NPHP4-209ENST00000489180 MXRA5Q9NR99 2828 aa8.68□□□□□ -1.02
NPHP4-209ENST00000489180 CSMD1Q96PZ7 3565 aa8.64□□□□□ -1.03
NPHP4-209ENST00000489180 PKD1L1Q8TDX9 2849 aa8.59□□□□□ -1.03
NPHP4-209ENST00000489180 KRTAP12-1P59990 96 aa8.59□□□□□ -1.03
NPHP4-209ENST00000489180 KRTAP3-1Q9BYR8 98 aa8.59□□□□□ -1.03
NPHP4-209ENST00000489180 VWFP04275 2813 aa8.54□□□□□ -1.04
NPHP4-209ENST00000489180 KRTAP13-4Q3LI77 160 aa8.54□□□□□ -1.04
NPHP4-209ENST00000489180 LAMA5O15230 3695 aa8.53□□□□□ -1.04
NPHP4-209ENST00000489180 PDZD2O15018 2839 aa8.5□□□□□ -1.05
NPHP4-209ENST00000489180 NBPF19A0A087WUL8 3843 aa8.46□□□□□ -1.06
NPHP4-209ENST00000489180 SMG1Q96Q15 3661 aaKnown RBP8.42□□□□□ -1.06
NPHP4-209ENST00000489180 KRTAP10-6P60371 365 aaPredicted RBP8.33□□□□□ -1.08
NPHP4-209ENST00000489180 DMDP11532 3685 aa8.28□□□□□ -1.08
NPHP4-209ENST00000489180 SVEP1Q4LDE5 3571 aa8.28□□□□□ -1.08
NPHP4-209ENST00000489180 FBN1P35555 2871 aaKnown RBP8.27□□□□□ -1.09
NPHP4-209ENST00000489180 KRTAP15-1Q3LI76 137 aa8.22□□□□□ -1.09
NPHP4-209ENST00000489180 ANK3Q12955 4377 aaKnown RBP8.18□□□□□ -1.1
NPHP4-209ENST00000489180 CUBNO60494 3623 aa8.15□□□□□ -1.1
NPHP4-209ENST00000489180 FBN3Q75N90 2809 aa8.14□□□□□ -1.11
NPHP4-209ENST00000489180 ZFHX3Q15911 3703 aa8.13□□□□□ -1.11
NPHP4-209ENST00000489180 OTOGQ6ZRI0 2925 aa8.13□□□□□ -1.11
NPHP4-209ENST00000489180 SRRM2Q9UQ35 2752 aaKnown RBP8.09□□□□□ -1.12
NPHP4-209ENST00000489180 MEGF8Q7Z7M0 2845 aa8.07□□□□□ -1.12
NPHP4-209ENST00000489180 CSMD2Q7Z408 3487 aa8.05□□□□□ -1.12
NPHP4-209ENST00000489180 SPENQ96T58 3664 aaKnown RBP8.03□□□□□ -1.12
NPHP4-209ENST00000489180 KRTAP3-2Q9BYR7 98 aa8.02□□□□□ -1.12
NPHP4-209ENST00000489180 KRTAP3-3Q9BYR6 98 aa8.01□□□□□ -1.13
NPHP4-209ENST00000489180 TRRAPQ9Y4A5 3859 aa7.96□□□□□ -1.14
NPHP4-209ENST00000489180 MT1HL1P0DM35 61 aa7.94□□□□□ -1.14
NPHP4-209ENST00000489180 MUC3AQ02505 3323 aa7.9□□□□□ -1.15
NPHP4-209ENST00000489180 COL7A1Q02388 2944 aa7.89□□□□□ -1.15
NPHP4-209ENST00000489180 HUWE1Q7Z6Z7 4374 aaKnown RBP7.81□□□□□ -1.16
NPHP4-209ENST00000489180 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
NPHP4-209ENST00000489180 KRTAP10-12P60413 245 aa7.79□□□□□ -1.16
NPHP4-209ENST00000489180 KRTAP10-4P60372 401 aaPredicted RBP7.73□□□□□ -1.17
NPHP4-209ENST00000489180 INE1O15225 51 aa7.73□□□□□ -1.17
NPHP4-209ENST00000489180 KRTAP4-5Q9BYR2 181 aa7.72□□□□□ -1.17
NPHP4-209ENST00000489180 BSNQ9UPA5 3926 aa7.68□□□□□ -1.18
NPHP4-209ENST00000489180 VPS13CQ709C8 3753 aa7.68□□□□□ -1.18
NPHP4-209ENST00000489180 LORP23490 312 aaPredicted RBP7.63□□□□□ -1.19
NPHP4-209ENST00000489180 LCE3AQ5TA76 89 aa7.61□□□□□ -1.19
NPHP4-209ENST00000489180 KRTAP12-3P60328 96 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms