RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
NPHP4-209ENST00000489180 SUPT5HO00267 1087 aaKnown RBP29.11■■■□□ 2.25
NPHP4-209ENST00000489180 SHROOM4Q9ULL8 1493 aa28.53■■■□□ 2.16
NPHP4-209ENST00000489180 EHMT2Q96KQ7 1210 aa28.46■■■□□ 2.15
NPHP4-209ENST00000489180 NISCHQ9Y2I1 1504 aa28.34■■■□□ 2.13
NPHP4-209ENST00000489180 PELP1Q8IZL8 1130 aaKnown RBP27.82■■■□□ 2.04
NPHP4-209ENST00000489180 PCGF6Q9BYE7 350 aa27.55■■■□□ 2
NPHP4-209ENST00000489180 FAM9AQ8IZU1 332 aaPredicted RBP27.54■■■□□ 2
NPHP4-209ENST00000489180 TTBK1Q5TCY1 1321 aaPredicted RBP27.54■■■□□ 2
NPHP4-209ENST00000489180 APLP2Q06481 763 aa27.51■■□□□ 1.99
NPHP4-209ENST00000489180 RANGAP1P46060 587 aaPredicted RBP27.03■■□□□ 1.92
NPHP4-209ENST00000489180 CENPBP07199 599 aaPredicted RBP26.99■■□□□ 1.91
NPHP4-209ENST00000489180 CCER1Q8TC90 406 aaPredicted RBP26.93■■□□□ 1.9
NPHP4-209ENST00000489180 ERICH6Q7L0X2 663 aa26.88■■□□□ 1.89
NPHP4-209ENST00000489180 ZEB1P37275 1124 aaPredicted RBP26.84■■□□□ 1.89
NPHP4-209ENST00000489180 TRIM41Q8WV44 630 aa26.79■■□□□ 1.88
NPHP4-209ENST00000489180 YTHDC1Q96MU7 727 aaKnown RBP26.68■■□□□ 1.86
NPHP4-209ENST00000489180 ATP1B4Q9UN42 357 aaPredicted RBP26.63■■□□□ 1.85
NPHP4-209ENST00000489180 PPARGC1BQ86YN6 1023 aaKnown RBP26.51■■□□□ 1.83
NPHP4-209ENST00000489180 UBTFP17480 764 aaKnown RBP26.51■■□□□ 1.83
NPHP4-209ENST00000489180 NEFLP07196 543 aa26.36■■□□□ 1.81
NPHP4-209ENST00000489180 TRIM26Q12899 539 aaPredicted RBP26.14■■□□□ 1.78
NPHP4-209ENST00000489180 HRCP23327 699 aa26.08■■□□□ 1.77
NPHP4-209ENST00000489180 MYT1Q01538 1121 aa26.07■■□□□ 1.76
NPHP4-209ENST00000489180 LOC105371045A0A1W2PR82 267 aa25.94■■□□□ 1.74
NPHP4-209ENST00000489180 ITGAEP38570 1179 aa25.89■■□□□ 1.74
NPHP4-209ENST00000489180 POLR3GLQ9BT43 218 aa25.76■■□□□ 1.71
NPHP4-209ENST00000489180 HNRNPUL2Q1KMD3 747 aaKnown RBP25.74■■□□□ 1.71
NPHP4-209ENST00000489180 CHIC1Q5VXU3 224 aa25.68■■□□□ 1.7
NPHP4-209ENST00000489180 CNGB1Q14028 1251 aaPredicted RBP25.67■■□□□ 1.7
NPHP4-209ENST00000489180 DAXXQ9UER7 740 aaPredicted RBP25.61■■□□□ 1.69
NPHP4-209ENST00000489180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.54■■□□□ 1.68
NPHP4-209ENST00000489180 DIEXFQ68CQ4 756 aaKnown RBP25.43■■□□□ 1.66
NPHP4-209ENST00000489180 MYT1LQ9UL68 1186 aa25.43■■□□□ 1.66
NPHP4-209ENST00000489180 BCANQ96GW7 911 aa25.14■■□□□ 1.62
NPHP4-209ENST00000489180 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
NPHP4-209ENST00000489180 RTL5Q5HYW3 569 aaPredicted RBP25.12■■□□□ 1.61
NPHP4-209ENST00000489180 GTF3C3Q9Y5Q9 886 aa25.11■■□□□ 1.61
NPHP4-209ENST00000489180 FAM50AQ14320 339 aaKnown RBP25.09■■□□□ 1.61
NPHP4-209ENST00000489180 ZNF316A6NFI3 1004 aaPredicted RBP25.07■■□□□ 1.6
NPHP4-209ENST00000489180 CLSPNQ9HAW4 1339 aa25.06■■□□□ 1.6
NPHP4-209ENST00000489180 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
NPHP4-209ENST00000489180 TRIM52Q96A61 297 aa24.95■■□□□ 1.58
NPHP4-209ENST00000489180 ZNF326Q5BKZ1 582 aaKnown RBP24.77■■□□□ 1.56
NPHP4-209ENST00000489180 ANP32CO43423 234 aa24.77■■□□□ 1.56
NPHP4-209ENST00000489180 CDK11AQ9UQ88 783 aaPredicted RBP24.72■■□□□ 1.55
NPHP4-209ENST00000489180 PABPN1Q86U42 306 aaKnown RBP eCLIP24.65■■□□□ 1.54
NPHP4-209ENST00000489180 ACIN1Q9UKV3 1341 aaKnown RBP24.64■■□□□ 1.53
NPHP4-209ENST00000489180 BCL11AQ9H165 835 aa24.51■■□□□ 1.51
NPHP4-209ENST00000489180 ABCC9O60706 1549 aa24.44■■□□□ 1.5
NPHP4-209ENST00000489180 P3H3Q8IVL6 736 aa24.42■■□□□ 1.5
NPHP4-209ENST00000489180 CANXP27824 592 aaKnown RBP24.41■■□□□ 1.5
NPHP4-209ENST00000489180 ARID3CA6NKF2 412 aa24.4■■□□□ 1.5
NPHP4-209ENST00000489180 ZBTB47Q9UFB7 747 aaPredicted RBP24.37■■□□□ 1.49
NPHP4-209ENST00000489180 NPM2Q86SE8 214 aaKnown RBP24.36■■□□□ 1.49
NPHP4-209ENST00000489180 FBLN2P98095 1184 aa24.32■■□□□ 1.48
NPHP4-209ENST00000489180 ANP32AP39687 249 aaKnown RBP24.3■■□□□ 1.48
NPHP4-209ENST00000489180 FKBP8Q14318 412 aa24.29■■□□□ 1.48
NPHP4-209ENST00000489180 SLC24A1O60721 1099 aa24.27■■□□□ 1.48
NPHP4-209ENST00000489180 CSRNP3Q8WYN3 585 aa24.25■■□□□ 1.47
NPHP4-209ENST00000489180 ZNF777Q9ULD5 760 aaPredicted RBP24.16■■□□□ 1.46
NPHP4-209ENST00000489180 HNRNPUQ00839 825 aaKnown RBP eCLIP24.09■■□□□ 1.45
NPHP4-209ENST00000489180 DDX10Q13206 875 aaKnown RBP24.09■■□□□ 1.45
NPHP4-209ENST00000489180 NEFMP07197 916 aa24.07■■□□□ 1.44
NPHP4-209ENST00000489180 FAM9BQ8IZU0 186 aa24.06■■□□□ 1.44
NPHP4-209ENST00000489180 EIF5BO60841 1220 aaKnown RBP24.03■■□□□ 1.44
NPHP4-209ENST00000489180 TONSLQ96HA7 1378 aa24.02■■□□□ 1.44
NPHP4-209ENST00000489180 SALL2Q9Y467 1007 aaPredicted RBP24.01■■□□□ 1.43
NPHP4-209ENST00000489180 SCAF1Q9H7N4 1312 aaKnown RBP23.95■■□□□ 1.42
NPHP4-209ENST00000489180 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.42
NPHP4-209ENST00000489180 NBR1Q14596 966 aa23.93■■□□□ 1.42
NPHP4-209ENST00000489180 HSP90AA1P07900 732 aaKnown RBP23.86■■□□□ 1.41
NPHP4-209ENST00000489180 IRX6P78412 446 aaPredicted RBP23.85■■□□□ 1.41
NPHP4-209ENST00000489180 MIER1Q8N108 512 aa23.85■■□□□ 1.41
NPHP4-209ENST00000489180 CHIC2Q9UKJ5 165 aa23.83■■□□□ 1.4
NPHP4-209ENST00000489180 CCDC136Q96JN2 1154 aa23.82■■□□□ 1.4
NPHP4-209ENST00000489180 CHGAP10645 457 aaKnown RBP23.81■■□□□ 1.4
NPHP4-209ENST00000489180 HIRIP3Q9BW71 556 aaPredicted RBP23.8■■□□□ 1.4
NPHP4-209ENST00000489180 ANP32BQ92688 251 aaKnown RBP23.8■■□□□ 1.4
NPHP4-209ENST00000489180 ARXQ96QS3 562 aa23.78■■□□□ 1.4
NPHP4-209ENST00000489180 UPF2Q9HAU5 1272 aaKnown RBP23.77■■□□□ 1.4
NPHP4-209ENST00000489180 TMC1Q8TDI8 760 aa23.75■■□□□ 1.39
NPHP4-209ENST00000489180 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
NPHP4-209ENST00000489180 MRS2Q9HD23 443 aa23.72■■□□□ 1.39
NPHP4-209ENST00000489180 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.66■■□□□ 1.38
NPHP4-209ENST00000489180 KDM2AQ9Y2K7 1162 aa23.65■■□□□ 1.38
NPHP4-209ENST00000489180 STAG3Q9UJ98 1225 aa23.61■■□□□ 1.37
NPHP4-209ENST00000489180 WDR43Q15061 677 aaKnown RBP eCLIP23.59■■□□□ 1.37
NPHP4-209ENST00000489180 PLPPR3Q6T4P5 718 aa23.59■■□□□ 1.37
NPHP4-209ENST00000489180 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.58■■□□□ 1.37
NPHP4-209ENST00000489180 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
NPHP4-209ENST00000489180 SENP3-EIF4A1A0A087X0R7 540 aa23.54■■□□□ 1.36
NPHP4-209ENST00000489180 ESF1Q9H501 851 aaKnown RBP23.52■■□□□ 1.36
NPHP4-209ENST00000489180 GLIPR1L2Q4G1C9 344 aa23.45■■□□□ 1.34
NPHP4-209ENST00000489180 ZCCHC6Q5VYS8 1495 aaKnown RBP23.44■■□□□ 1.34
NPHP4-209ENST00000489180 RRP7BPQ9NSQ0 103 aa23.44■■□□□ 1.34
NPHP4-209ENST00000489180 MTUS2Q5JR59 1369 aa23.44■■□□□ 1.34
NPHP4-209ENST00000489180 CLIP1P30622 1438 aa23.43■■□□□ 1.34
NPHP4-209ENST00000489180 EIF4G2P78344 907 aaKnown RBP eCLIP23.42■■□□□ 1.342e-7■■■■■ 44.3
NPHP4-209ENST00000489180 SENP3Q9H4L4 574 aaPredicted RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 341.8 ms