RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 ATOX1O00244 68 aa9.19□□□□□ -0.94
SYNE1-227ENST00000489156 C4orf48Q5BLP8 95 aa9.19□□□□□ -0.94
SYNE1-227ENST00000489156 SPINK1P00995 79 aa9.18□□□□□ -0.94
SYNE1-227ENST00000489156 ANAPC13Q9BS18 74 aa9.18□□□□□ -0.94
SYNE1-227ENST00000489156 SPAG11AQ6PDA7 123 aa9.17□□□□□ -0.94
SYNE1-227ENST00000489156 LIMD2Q9BT23 127 aa9.17□□□□□ -0.94
SYNE1-227ENST00000489156 NDUFB1O75438 58 aa9.16□□□□□ -0.94
SYNE1-227ENST00000489156 PRR15Q8IV56 129 aa9.16□□□□□ -0.94
SYNE1-227ENST00000489156 RPS29P62273 56 aaKnown RBP9.15□□□□□ -0.95
SYNE1-227ENST00000489156 LINC00304Q8N9R0 145 aa9.13□□□□□ -0.95
SYNE1-227ENST00000489156 HCG22E2RYF7 251 aa9.11□□□□□ -0.95
SYNE1-227ENST00000489156 SMIM20Q8N5G0 67 aa9.11□□□□□ -0.95
SYNE1-227ENST00000489156 A0A1B0GVX0 72 aa9.07□□□□□ -0.96
SYNE1-227ENST00000489156 C1orf195Q5TG92 126 aa9.07□□□□□ -0.96
SYNE1-227ENST00000489156 SERP2Q8N6R1 65 aa9.07□□□□□ -0.96
SYNE1-227ENST00000489156 TRAV7A0A075B6U4 112 aa9.04□□□□□ -0.96
SYNE1-227ENST00000489156 COX7CP15954 63 aa9.03□□□□□ -0.96
SYNE1-227ENST00000489156 CASC2Q6XLA1 102 aa9.03□□□□□ -0.96
SYNE1-227ENST00000489156 IGHV6-1A0A0B4J1U7 121 aa9.02□□□□□ -0.97
SYNE1-227ENST00000489156 MMP24-AS1A0A0U1RRL7 71 aa9.02□□□□□ -0.97
SYNE1-227ENST00000489156 UQCRQO14949 82 aa9.02□□□□□ -0.97
SYNE1-227ENST00000489156 WFDC13Q8IUB5 93 aa9.02□□□□□ -0.97
SYNE1-227ENST00000489156 C8orf17Q9NRJ1 99 aa9.02□□□□□ -0.97
SYNE1-227ENST00000489156 OCR1Q9BZK8 76 aa9□□□□□ -0.97
SYNE1-227ENST00000489156 hDV103S1A0JD37 113 aa9□□□□□ -0.97
SYNE1-227ENST00000489156 C8orf87E5RJ46 101 aa8.98□□□□□ -0.97
SYNE1-227ENST00000489156 HERC1Q15751 4861 aa8.97□□□□□ -0.97
SYNE1-227ENST00000489156 CCDC179H3BU77 68 aa8.96□□□□□ -0.98
SYNE1-227ENST00000489156 TMEM254Q8TBM7 123 aa8.94□□□□□ -0.98
SYNE1-227ENST00000489156 RETNLBQ9BQ08 111 aa8.94□□□□□ -0.98
SYNE1-227ENST00000489156 LINC00313P59037 77 aa8.93□□□□□ -0.98
SYNE1-227ENST00000489156 NOTCH2NLQ7Z3S9 236 aa8.93□□□□□ -0.98
SYNE1-227ENST00000489156 MRPL34Q9BQ48 92 aaKnown RBP8.91□□□□□ -0.98
SYNE1-227ENST00000489156 TP53AIP1Q9HCN2 124 aa8.89□□□□□ -0.99
SYNE1-227ENST00000489156 C5orf47Q569G3 176 aa8.88□□□□□ -0.99
SYNE1-227ENST00000489156 C20orf197Q8N268 126 aa8.86□□□□□ -0.99
SYNE1-227ENST00000489156 KLKP1Q107X0 134 aa8.85□□□□□ -0.99
SYNE1-227ENST00000489156 PRR4Q16378 134 aa8.85□□□□□ -0.99
SYNE1-227ENST00000489156 NDUFS5O43920 106 aa8.82□□□□□ -1
SYNE1-227ENST00000489156 Q8N9P0 234 aaPredicted RBP8.82□□□□□ -1
SYNE1-227ENST00000489156 KRTAP16-1A8MUX0 517 aa8.81□□□□□ -1
SYNE1-227ENST00000489156 MP68P56378 58 aa8.8□□□□□ -1
SYNE1-227ENST00000489156 A0A0U1RQV1 116 aa8.79□□□□□ -1
SYNE1-227ENST00000489156 FP248Q71RG6 208 aaPredicted RBP8.79□□□□□ -1
SYNE1-227ENST00000489156 TRAV22A0A0B4J277 110 aa8.79□□□□□ -1
SYNE1-227ENST00000489156 H3BPC8 53 aa8.79□□□□□ -1
SYNE1-227ENST00000489156 IGLV7-46A0A075B6I9 117 aa8.78□□□□□ -1
SYNE1-227ENST00000489156 SNURFQ9Y675 71 aa8.77□□□□□ -1.01
SYNE1-227ENST00000489156 H0Y9P7 68 aa8.76□□□□□ -1.01
SYNE1-227ENST00000489156 NDUFC1O43677 76 aa8.76□□□□□ -1.01
SYNE1-227ENST00000489156 CYSTM1Q9H1C7 97 aa8.75□□□□□ -1.01
SYNE1-227ENST00000489156 HMCN2Q8NDA2 5059 aa8.74□□□□□ -1.01
SYNE1-227ENST00000489156 ZCCHC13Q8WW36 166 aaKnown RBP8.73□□□□□ -1.01
SYNE1-227ENST00000489156 LPAP08519 4548 aa8.73□□□□□ -1.01
SYNE1-227ENST00000489156 LINC00208Q96KT6 92 aa8.71□□□□□ -1.01
SYNE1-227ENST00000489156 H7BZZ5 65 aa8.7□□□□□ -1.02
SYNE1-227ENST00000489156 C1orf64Q8NEQ6 169 aa8.69□□□□□ -1.02
SYNE1-227ENST00000489156 C9orf92A6NGG3 77 aa8.68□□□□□ -1.02
SYNE1-227ENST00000489156 KRTAP13-3Q3SY46 172 aa8.68□□□□□ -1.02
SYNE1-227ENST00000489156 TMEM258P61165 79 aa8.68□□□□□ -1.02
SYNE1-227ENST00000489156 Q5W150 140 aa8.68□□□□□ -1.02
SYNE1-227ENST00000489156 TPRXLQ17RH7 258 aa8.67□□□□□ -1.02
SYNE1-227ENST00000489156 C20orf166-AS1Q96NR2 134 aa8.67□□□□□ -1.02
SYNE1-227ENST00000489156 A8MUU9 505 aa8.65□□□□□ -1.02
SYNE1-227ENST00000489156 LRP2P98164 4655 aa8.64□□□□□ -1.03
SYNE1-227ENST00000489156 LOC101927531A0A1B0GV80 90 aa8.63□□□□□ -1.03
SYNE1-227ENST00000489156 Q75L30 129 aa8.6□□□□□ -1.03
SYNE1-227ENST00000489156 ATP5EP56381 51 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-227ENST00000489156 CYP4F30PQ9H0H9 118 aa8.56□□□□□ -1.04
SYNE1-227ENST00000489156 XP32Q5T750 250 aa8.55□□□□□ -1.04
SYNE1-227ENST00000489156 FAM236DA0A1B0GTK5 79 aa8.55□□□□□ -1.04
SYNE1-227ENST00000489156 FAM236CP0DP71 79 aa8.55□□□□□ -1.04
SYNE1-227ENST00000489156 IGKV2-30P06310 120 aa8.53□□□□□ -1.04
SYNE1-227ENST00000489156 SPANXA2-OT1Q8N9U9 137 aa8.53□□□□□ -1.04
SYNE1-227ENST00000489156 PCOTHQ58A44 107 aa8.5□□□□□ -1.05
SYNE1-227ENST00000489156 RPL37P61927 97 aaKnown RBP8.49□□□□□ -1.05
SYNE1-227ENST00000489156 ATP11AUNQ6ZP68 121 aa8.47□□□□□ -1.05
SYNE1-227ENST00000489156 IGKV2D-30A0A075B6S6 120 aa8.46□□□□□ -1.06
SYNE1-227ENST00000489156 C7orf65Q6ZTY9 151 aa8.46□□□□□ -1.06
SYNE1-227ENST00000489156 UBR4Q5T4S7 5183 aa8.44□□□□□ -1.06
SYNE1-227ENST00000489156 RPS28P62857 69 aaKnown RBP8.43□□□□□ -1.06
SYNE1-227ENST00000489156 HRES1P13985 223 aa8.4□□□□□ -1.07
SYNE1-227ENST00000489156 SERP1Q9Y6X1 66 aa8.4□□□□□ -1.07
SYNE1-227ENST00000489156 SEC61BP60468 96 aaKnown RBP8.38□□□□□ -1.07
SYNE1-227ENST00000489156 SPINK7P58062 85 aa8.37□□□□□ -1.07
SYNE1-227ENST00000489156 MUC17Q685J3 4493 aa8.37□□□□□ -1.07
SYNE1-227ENST00000489156 DMAC1Q96GE9 116 aa8.3□□□□□ -1.08
SYNE1-227ENST00000489156 RNF213Q63HN8 5207 aa8.28□□□□□ -1.08
SYNE1-227ENST00000489156 MUC2Q02817 5179 aa8.28□□□□□ -1.08
SYNE1-227ENST00000489156 ACYP2P14621 99 aa8.28□□□□□ -1.08
SYNE1-227ENST00000489156 KRTAP4-1Q9BYQ7 146 aa8.27□□□□□ -1.09
SYNE1-227ENST00000489156 A8MUN3 132 aa8.24□□□□□ -1.09
SYNE1-227ENST00000489156 C4orf26Q17RF5 130 aa8.24□□□□□ -1.09
SYNE1-227ENST00000489156 COA5Q86WW8 74 aa8.23□□□□□ -1.09
SYNE1-227ENST00000489156 SMIM26A0A096LP01 95 aa8.19□□□□□ -1.1
SYNE1-227ENST00000489156 COX6B2Q6YFQ2 88 aa8.17□□□□□ -1.1
SYNE1-227ENST00000489156 KRTAP3-1Q9BYR8 98 aa8.13□□□□□ -1.11
SYNE1-227ENST00000489156 CHKB-CPT1BH3BT56 60 aa8.11□□□□□ -1.11
SYNE1-227ENST00000489156 MPLKIPQ8TAP9 179 aa8.09□□□□□ -1.12
SYNE1-227ENST00000489156 RBM12B-AS1Q9P1G2 102 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms