RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 MT1HL1P0DM35 61 aa8.16□□□□□ -1.1
CUX1-209ENST00000487284 SMIM20Q8N5G0 67 aa8.16□□□□□ -1.1
CUX1-209ENST00000487284 NDUFB1O75438 58 aa8.15□□□□□ -1.1
CUX1-209ENST00000487284 COX7CP15954 63 aa8.15□□□□□ -1.1
CUX1-209ENST00000487284 LIMD2Q9BT23 127 aa8.15□□□□□ -1.1
CUX1-209ENST00000487284 TRAV7A0A075B6U4 112 aa8.14□□□□□ -1.11
CUX1-209ENST00000487284 KRTAP29-1A8MX34 341 aaPredicted RBP8.14□□□□□ -1.11
CUX1-209ENST00000487284 UQCRQO14949 82 aa8.14□□□□□ -1.11
CUX1-209ENST00000487284 SPINK1P00995 79 aa8.14□□□□□ -1.11
CUX1-209ENST00000487284 C4orf48Q5BLP8 95 aa8.14□□□□□ -1.11
CUX1-209ENST00000487284 CCDC179H3BU77 68 aa8.13□□□□□ -1.11
CUX1-209ENST00000487284 LINC00304Q8N9R0 145 aa8.13□□□□□ -1.11
CUX1-209ENST00000487284 A0A1B0GVX0 72 aa8.12□□□□□ -1.11
CUX1-209ENST00000487284 SPAG11AQ6PDA7 123 aa8.12□□□□□ -1.11
CUX1-209ENST00000487284 MMP24-AS1A0A0U1RRL7 71 aa8.11□□□□□ -1.11
CUX1-209ENST00000487284 RPS29P62273 56 aaKnown RBP8.11□□□□□ -1.11
CUX1-209ENST00000487284 OCR1Q9BZK8 76 aa8.11□□□□□ -1.11
CUX1-209ENST00000487284 C1orf195Q5TG92 126 aa8.1□□□□□ -1.11
CUX1-209ENST00000487284 WFDC13Q8IUB5 93 aa8.1□□□□□ -1.11
CUX1-209ENST00000487284 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
CUX1-209ENST00000487284 CASC2Q6XLA1 102 aa8.09□□□□□ -1.11
CUX1-209ENST00000487284 C8orf17Q9NRJ1 99 aa8.08□□□□□ -1.12
CUX1-209ENST00000487284 IGHV6-1A0A0B4J1U7 121 aa8.06□□□□□ -1.12
CUX1-209ENST00000487284 J3QL48 77 aa8.05□□□□□ -1.12
CUX1-209ENST00000487284 hDV103S1A0JD37 113 aa8.04□□□□□ -1.12
CUX1-209ENST00000487284 C8orf87E5RJ46 101 aa8.01□□□□□ -1.13
CUX1-209ENST00000487284 NOTCH2NLQ7Z3S9 236 aa8.01□□□□□ -1.13
CUX1-209ENST00000487284 TMEM254Q8TBM7 123 aa8□□□□□ -1.13
CUX1-209ENST00000487284 C20orf197Q8N268 126 aa7.99□□□□□ -1.13
CUX1-209ENST00000487284 MRPL34Q9BQ48 92 aaKnown RBP7.97□□□□□ -1.13
CUX1-209ENST00000487284 HERC1Q15751 4861 aa7.97□□□□□ -1.13
CUX1-209ENST00000487284 KLKP1Q107X0 134 aa7.97□□□□□ -1.13
CUX1-209ENST00000487284 CYSTM1Q9H1C7 97 aa7.96□□□□□ -1.14
CUX1-209ENST00000487284 LINC00313P59037 77 aa7.95□□□□□ -1.14
CUX1-209ENST00000487284 RETNLBQ9BQ08 111 aa7.95□□□□□ -1.14
CUX1-209ENST00000487284 C5orf47Q569G3 176 aa7.94□□□□□ -1.14
CUX1-209ENST00000487284 A0A0U1RQV1 116 aa7.93□□□□□ -1.14
CUX1-209ENST00000487284 TP53AIP1Q9HCN2 124 aa7.93□□□□□ -1.14
CUX1-209ENST00000487284 SNURFQ9Y675 71 aa7.92□□□□□ -1.14
CUX1-209ENST00000487284 KRTAP16-1A8MUX0 517 aa7.91□□□□□ -1.14
CUX1-209ENST00000487284 NDUFS5O43920 106 aa7.89□□□□□ -1.15
CUX1-209ENST00000487284 TRAV22A0A0B4J277 110 aa7.88□□□□□ -1.15
CUX1-209ENST00000487284 H0Y9P7 68 aa7.88□□□□□ -1.15
CUX1-209ENST00000487284 Q8N9P0 234 aaPredicted RBP7.88□□□□□ -1.15
CUX1-209ENST00000487284 ZCCHC13Q8WW36 166 aaKnown RBP7.88□□□□□ -1.15
CUX1-209ENST00000487284 H7BZZ5 65 aa7.87□□□□□ -1.15
CUX1-209ENST00000487284 MP68P56378 58 aa7.87□□□□□ -1.15
CUX1-209ENST00000487284 H3BPC8 53 aa7.86□□□□□ -1.15
CUX1-209ENST00000487284 NDUFC1O43677 76 aa7.86□□□□□ -1.15
CUX1-209ENST00000487284 TMEM258P61165 79 aa7.84□□□□□ -1.15
CUX1-209ENST00000487284 LINC00208Q96KT6 92 aa7.83□□□□□ -1.16
CUX1-209ENST00000487284 PRR4Q16378 134 aa7.82□□□□□ -1.16
CUX1-209ENST00000487284 KRTAP13-3Q3SY46 172 aa7.81□□□□□ -1.16
CUX1-209ENST00000487284 FP248Q71RG6 208 aaPredicted RBP7.81□□□□□ -1.16
CUX1-209ENST00000487284 IGLV7-46A0A075B6I9 117 aa7.8□□□□□ -1.16
CUX1-209ENST00000487284 Q5W150 140 aa7.8□□□□□ -1.16
CUX1-209ENST00000487284 C1orf64Q8NEQ6 169 aa7.79□□□□□ -1.16
CUX1-209ENST00000487284 LPAP08519 4548 aa7.76□□□□□ -1.17
CUX1-209ENST00000487284 C9orf92A6NGG3 77 aa7.76□□□□□ -1.17
CUX1-209ENST00000487284 HMCN2Q8NDA2 5059 aa7.75□□□□□ -1.17
CUX1-209ENST00000487284 FAM236DA0A1B0GTK5 79 aa7.74□□□□□ -1.17
CUX1-209ENST00000487284 FAM236CP0DP71 79 aa7.74□□□□□ -1.17
CUX1-209ENST00000487284 C20orf166-AS1Q96NR2 134 aa7.73□□□□□ -1.17
CUX1-209ENST00000487284 LOC101927531A0A1B0GV80 90 aa7.72□□□□□ -1.17
CUX1-209ENST00000487284 A8MUU9 505 aa7.72□□□□□ -1.17
CUX1-209ENST00000487284 ATP5EP56381 51 aaPredicted RBP7.71□□□□□ -1.17
CUX1-209ENST00000487284 TPRXLQ17RH7 258 aa7.7□□□□□ -1.18
CUX1-209ENST00000487284 LRP2P98164 4655 aa7.68□□□□□ -1.18
CUX1-209ENST00000487284 CYP4F30PQ9H0H9 118 aa7.67□□□□□ -1.18
CUX1-209ENST00000487284 IGKV2-30P06310 120 aa7.66□□□□□ -1.18
CUX1-209ENST00000487284 SPANXA2-OT1Q8N9U9 137 aa7.66□□□□□ -1.18
CUX1-209ENST00000487284 Q75L30 129 aa7.65□□□□□ -1.18
CUX1-209ENST00000487284 PCOTHQ58A44 107 aa7.63□□□□□ -1.19
CUX1-209ENST00000487284 XP32Q5T750 250 aa7.63□□□□□ -1.19
CUX1-209ENST00000487284 RPS28P62857 69 aaKnown RBP7.6□□□□□ -1.19
CUX1-209ENST00000487284 SERP1Q9Y6X1 66 aa7.59□□□□□ -1.19
CUX1-209ENST00000487284 IGKV2D-30A0A075B6S6 120 aa7.58□□□□□ -1.2
CUX1-209ENST00000487284 RPL37P61927 97 aaKnown RBP7.56□□□□□ -1.2
CUX1-209ENST00000487284 C7orf65Q6ZTY9 151 aa7.56□□□□□ -1.2
CUX1-209ENST00000487284 HRES1P13985 223 aa7.54□□□□□ -1.2
CUX1-209ENST00000487284 ATP11AUNQ6ZP68 121 aa7.5□□□□□ -1.21
CUX1-209ENST00000487284 MUC17Q685J3 4493 aa7.5□□□□□ -1.21
CUX1-209ENST00000487284 UBR4Q5T4S7 5183 aa7.5□□□□□ -1.21
CUX1-209ENST00000487284 SPINK7P58062 85 aa7.46□□□□□ -1.21
CUX1-209ENST00000487284 SVIPQ8NHG7 77 aa7.46□□□□□ -1.22
CUX1-209ENST00000487284 DMAC1Q96GE9 116 aa7.46□□□□□ -1.22
CUX1-209ENST00000487284 SEC61BP60468 96 aaKnown RBP7.42□□□□□ -1.22
CUX1-209ENST00000487284 COA5Q86WW8 74 aa7.42□□□□□ -1.22
CUX1-209ENST00000487284 SMIM26A0A096LP01 95 aa7.4□□□□□ -1.22
CUX1-209ENST00000487284 ACYP2P14621 99 aa7.39□□□□□ -1.23
CUX1-209ENST00000487284 C4orf26Q17RF5 130 aa7.37□□□□□ -1.23
CUX1-209ENST00000487284 A8MUN3 132 aa7.35□□□□□ -1.23
CUX1-209ENST00000487284 KRTAP4-1Q9BYQ7 146 aa7.33□□□□□ -1.24
CUX1-209ENST00000487284 MUC2Q02817 5179 aa7.31□□□□□ -1.24
CUX1-209ENST00000487284 COX6B2Q6YFQ2 88 aa7.3□□□□□ -1.24
CUX1-209ENST00000487284 KRTAP3-1Q9BYR8 98 aa7.3□□□□□ -1.24
CUX1-209ENST00000487284 RNF213Q63HN8 5207 aa7.29□□□□□ -1.24
CUX1-209ENST00000487284 CHKB-CPT1BH3BT56 60 aa7.26□□□□□ -1.25
CUX1-209ENST00000487284 Q1T7F1 81 aa7.25□□□□□ -1.25
CUX1-209ENST00000487284 MPLKIPQ8TAP9 179 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 180 ms