RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ADGRG4Q8IZF6 3080 aa9.06□□□□□ -0.96
COL7A1-210ENST00000487017 KMT2BQ9UMN6 2715 aaPredicted RBP9.05□□□□□ -0.96
COL7A1-210ENST00000487017 FLNCQ14315 2725 aa9.04□□□□□ -0.96
COL7A1-210ENST00000487017 APCP25054 2843 aa9.02□□□□□ -0.97
COL7A1-210ENST00000487017 UTP20O75691 2785 aaKnown RBP9.01□□□□□ -0.97
COL7A1-210ENST00000487017 TACC2O95359 2948 aa9.01□□□□□ -0.97
COL7A1-210ENST00000487017 COL6A3P12111 3177 aa8.99□□□□□ -0.97
COL7A1-210ENST00000487017 BOD1L1Q8NFC6 3051 aa8.99□□□□□ -0.97
COL7A1-210ENST00000487017 COL12A1Q99715 3063 aa8.98□□□□□ -0.97
COL7A1-210ENST00000487017 DMXL2Q8TDJ6 3036 aa8.95□□□□□ -0.98
COL7A1-210ENST00000487017 ASH1LQ9NR48 2969 aaKnown RBP8.93□□□□□ -0.98
COL7A1-210ENST00000487017 FRYLO94915 3013 aa8.93□□□□□ -0.98
COL7A1-210ENST00000487017 C10orf95Q9H7T3 257 aa8.93□□□□□ -0.98
COL7A1-210ENST00000487017 TNP1P09430 55 aa8.9□□□□□ -0.98
COL7A1-210ENST00000487017 HIVEP1P15822 2718 aa8.9□□□□□ -0.98
COL7A1-210ENST00000487017 KRTAP1-4P0C5Y4 121 aa8.85□□□□□ -0.99
COL7A1-210ENST00000487017 NIPBLQ6KC79 2804 aaeCLIP8.83□□□□□ -1
COL7A1-210ENST00000487017 ZZEF1O43149 2961 aa8.79□□□□□ -1
COL7A1-210ENST00000487017 SPEGQ15772 3267 aa8.78□□□□□ -1
COL7A1-210ENST00000487017 EYSQ5T1H1 3165 aa8.75□□□□□ -1.01
COL7A1-210ENST00000487017 CFAP47Q6ZTR5 3102 aa8.75□□□□□ -1.01
COL7A1-210ENST00000487017 CELSR2Q9HCU4 2923 aa8.75□□□□□ -1.01
COL7A1-210ENST00000487017 H0YAA0 97 aa8.73□□□□□ -1.01
COL7A1-210ENST00000487017 SPTBN5Q9NRC6 3674 aaKnown RBP8.72□□□□□ -1.01
COL7A1-210ENST00000487017 A0A1B0GVY2 172 aa8.71□□□□□ -1.01
COL7A1-210ENST00000487017 HRNRQ86YZ3 2850 aaPredicted RBP8.71□□□□□ -1.01
COL7A1-210ENST00000487017 XP32Q5T750 250 aa8.71□□□□□ -1.02
COL7A1-210ENST00000487017 KRTAP10-8P60410 259 aa8.71□□□□□ -1.02
COL7A1-210ENST00000487017 KRTAP21-3Q3LHN1 58 aa8.68□□□□□ -1.02
COL7A1-210ENST00000487017 ZANQ9Y493 2812 aa8.68□□□□□ -1.02
COL7A1-210ENST00000487017 USP34Q70CQ2 3546 aa8.65□□□□□ -1.02
COL7A1-210ENST00000487017 REV3LO60673 3130 aa8.65□□□□□ -1.02
COL7A1-210ENST00000487017 DCHS2Q6V1P9 2916 aa8.64□□□□□ -1.03
COL7A1-210ENST00000487017 PP632Q6XCG6 107 aa8.6□□□□□ -1.03
COL7A1-210ENST00000487017 TNRC18O15417 2968 aaPredicted RBP8.6□□□□□ -1.03
COL7A1-210ENST00000487017 CRYBG3Q68DQ2 2970 aa8.6□□□□□ -1.03
COL7A1-210ENST00000487017 TENM4Q6N022 2769 aa8.58□□□□□ -1.04
COL7A1-210ENST00000487017 MYO15AQ9UKN7 3530 aa8.53□□□□□ -1.04
COL7A1-210ENST00000487017 DMXL1Q9Y485 3027 aa8.51□□□□□ -1.05
COL7A1-210ENST00000487017 KRTAP13-3Q3SY46 172 aa8.5□□□□□ -1.05
COL7A1-210ENST00000487017 FBN2P35556 2912 aa8.5□□□□□ -1.05
COL7A1-210ENST00000487017 P0C880 135 aa8.49□□□□□ -1.05
COL7A1-210ENST00000487017 TPRXLQ17RH7 258 aa8.49□□□□□ -1.05
COL7A1-210ENST00000487017 LOC400499M0QZD8 3231 aa8.46□□□□□ -1.06
COL7A1-210ENST00000487017 KRTAP10-10P60014 251 aa8.43□□□□□ -1.06
COL7A1-210ENST00000487017 NF1P21359 2839 aa8.39□□□□□ -1.07
COL7A1-210ENST00000487017 TGP01266 2768 aa8.28□□□□□ -1.08
COL7A1-210ENST00000487017 CELSR1Q9NYQ6 3014 aa8.28□□□□□ -1.08
COL7A1-210ENST00000487017 PRO2289Q9P1D8 64 aa8.27□□□□□ -1.09
COL7A1-210ENST00000487017 MXRA5Q9NR99 2828 aa8.24□□□□□ -1.09
COL7A1-210ENST00000487017 TENM1Q9UKZ4 2725 aa8.24□□□□□ -1.09
COL7A1-210ENST00000487017 TENM3Q9P273 2699 aa8.24□□□□□ -1.09
COL7A1-210ENST00000487017 WDFY3Q8IZQ1 3526 aa8.2□□□□□ -1.1
COL7A1-210ENST00000487017 KRTAP12-2P59991 146 aa8.17□□□□□ -1.1
COL7A1-210ENST00000487017 TENM2Q9NT68 2774 aa8.16□□□□□ -1.1
COL7A1-210ENST00000487017 RELNP78509 3460 aa8.12□□□□□ -1.11
COL7A1-210ENST00000487017 KRTAP3-1Q9BYR8 98 aa8.06□□□□□ -1.12
COL7A1-210ENST00000487017 KRTAP12-1P59990 96 aa8.03□□□□□ -1.12
COL7A1-210ENST00000487017 DCHS1Q96JQ0 3298 aa8.01□□□□□ -1.13
COL7A1-210ENST00000487017 KRTAP13-4Q3LI77 160 aa7.99□□□□□ -1.13
COL7A1-210ENST00000487017 ZFHX4Q86UP3 3567 aa7.99□□□□□ -1.13
COL7A1-210ENST00000487017 ASPMQ8IZT6 3477 aa7.99□□□□□ -1.13
COL7A1-210ENST00000487017 PDZD2O15018 2839 aa7.96□□□□□ -1.13
COL7A1-210ENST00000487017 CSMD1Q96PZ7 3565 aa7.9□□□□□ -1.15
COL7A1-210ENST00000487017 DMDP11532 3685 aa7.87□□□□□ -1.15
COL7A1-210ENST00000487017 PKD1L1Q8TDX9 2849 aa7.87□□□□□ -1.15
COL7A1-210ENST00000487017 LAMA5O15230 3695 aa7.85□□□□□ -1.15
COL7A1-210ENST00000487017 KRTAP10-6P60371 365 aaPredicted RBP7.84□□□□□ -1.15
COL7A1-210ENST00000487017 MUC3AQ02505 3323 aa7.81□□□□□ -1.16
COL7A1-210ENST00000487017 VWFP04275 2813 aa7.79□□□□□ -1.16
COL7A1-210ENST00000487017 NBPF19A0A087WUL8 3843 aa7.78□□□□□ -1.16
COL7A1-210ENST00000487017 SMG1Q96Q15 3661 aaKnown RBP7.76□□□□□ -1.17
COL7A1-210ENST00000487017 ANK3Q12955 4377 aaKnown RBP7.76□□□□□ -1.17
COL7A1-210ENST00000487017 KRTAP15-1Q3LI76 137 aa7.71□□□□□ -1.18
COL7A1-210ENST00000487017 OTOGQ6ZRI0 2925 aa7.68□□□□□ -1.18
COL7A1-210ENST00000487017 FBN1P35555 2871 aaKnown RBP7.67□□□□□ -1.18
COL7A1-210ENST00000487017 FBN3Q75N90 2809 aa7.61□□□□□ -1.19
COL7A1-210ENST00000487017 KRTAP3-2Q9BYR7 98 aa7.57□□□□□ -1.2
COL7A1-210ENST00000487017 SVEP1Q4LDE5 3571 aa7.56□□□□□ -1.2
COL7A1-210ENST00000487017 KRTAP3-3Q9BYR6 98 aa7.56□□□□□ -1.2
COL7A1-210ENST00000487017 MEGF8Q7Z7M0 2845 aa7.52□□□□□ -1.21
COL7A1-210ENST00000487017 MT1HL1P0DM35 61 aa7.5□□□□□ -1.21
COL7A1-210ENST00000487017 CRCT1Q9UGL9 99 aa7.46□□□□□ -1.22
COL7A1-210ENST00000487017 ZFHX3Q15911 3703 aa7.45□□□□□ -1.22
COL7A1-210ENST00000487017 CUBNO60494 3623 aa7.42□□□□□ -1.22
COL7A1-210ENST00000487017 TRRAPQ9Y4A5 3859 aa7.41□□□□□ -1.22
COL7A1-210ENST00000487017 SRRM2Q9UQ35 2752 aaKnown RBP7.4□□□□□ -1.22
COL7A1-210ENST00000487017 SPENQ96T58 3664 aaKnown RBP7.4□□□□□ -1.22
COL7A1-210ENST00000487017 KRTAP10-4P60372 401 aaPredicted RBP7.39□□□□□ -1.23
COL7A1-210ENST00000487017 INE1O15225 51 aa7.39□□□□□ -1.23
COL7A1-210ENST00000487017 HUWE1Q7Z6Z7 4374 aaKnown RBP7.37□□□□□ -1.23
COL7A1-210ENST00000487017 CSMD2Q7Z408 3487 aa7.37□□□□□ -1.23
COL7A1-210ENST00000487017 COL7A1Q02388 2944 aa7.3□□□□□ -1.24
COL7A1-210ENST00000487017 BSNQ9UPA5 3926 aa7.28□□□□□ -1.24
COL7A1-210ENST00000487017 KRTAP10-12P60413 245 aa7.25□□□□□ -1.25
COL7A1-210ENST00000487017 KRTAP23-1A1A580 65 aa7.14□□□□□ -1.27
COL7A1-210ENST00000487017 KRTAP4-5Q9BYR2 181 aa7.13□□□□□ -1.27
COL7A1-210ENST00000487017 ALMS1Q8TCU4 4167 aa7.11□□□□□ -1.27
COL7A1-210ENST00000487017 VPS13CQ709C8 3753 aa7.11□□□□□ -1.27
COL7A1-210ENST00000487017 KRTAP12-3P60328 96 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms