RNA–Protein interactions for RNA: ENST00000475432.6

HIF3A-207, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,004 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-207ENST00000475432 TNXBP22105 4242 aa10.28□□□□□ -0.76
HIF3A-207ENST00000475432 A0A1B0GVX0 72 aa10.24□□□□□ -0.77
HIF3A-207ENST00000475432 HERC2O95714 4834 aa10.24□□□□□ -0.77
HIF3A-207ENST00000475432 MT1HL1P0DM35 61 aa10.23□□□□□ -0.77
HIF3A-207ENST00000475432 IGHV6-1A0A0B4J1U7 121 aa10.22□□□□□ -0.77
HIF3A-207ENST00000475432 HCG22E2RYF7 251 aa10.22□□□□□ -0.77
HIF3A-207ENST00000475432 OXTP01178 125 aa10.2□□□□□ -0.78
HIF3A-207ENST00000475432 WFDC13Q8IUB5 93 aa10.18□□□□□ -0.78
HIF3A-207ENST00000475432 MMP24-AS1A0A0U1RRL7 71 aa10.17□□□□□ -0.78
HIF3A-207ENST00000475432 ATOX1O00244 68 aa10.17□□□□□ -0.78
HIF3A-207ENST00000475432 ABCA13Q86UQ4 5058 aa10.17□□□□□ -0.78
HIF3A-207ENST00000475432 C8orf17Q9NRJ1 99 aa10.17□□□□□ -0.78
HIF3A-207ENST00000475432 KRTAP29-1A8MX34 341 aaPredicted RBP10.16□□□□□ -0.78
HIF3A-207ENST00000475432 CASC2Q6XLA1 102 aa10.16□□□□□ -0.78
HIF3A-207ENST00000475432 NOTCH2NLQ7Z3S9 236 aa10.16□□□□□ -0.78
HIF3A-207ENST00000475432 ANAPC13Q9BS18 74 aa10.16□□□□□ -0.78
HIF3A-207ENST00000475432 RETNLBQ9BQ08 111 aa10.14□□□□□ -0.79
HIF3A-207ENST00000475432 hDV103S1A0JD37 113 aa10.12□□□□□ -0.79
HIF3A-207ENST00000475432 DMBT1Q9UGM3 2413 aaPredicted RBP10.11□□□□□ -0.79
HIF3A-207ENST00000475432 C8orf87E5RJ46 101 aa10.1□□□□□ -0.79
HIF3A-207ENST00000475432 LINC00313P59037 77 aa10.09□□□□□ -0.79
HIF3A-207ENST00000475432 SMIM20Q8N5G0 67 aa10.07□□□□□ -0.8
HIF3A-207ENST00000475432 OCR1Q9BZK8 76 aa10.06□□□□□ -0.8
HIF3A-207ENST00000475432 SERP2Q8N6R1 65 aa10.06□□□□□ -0.8
HIF3A-207ENST00000475432 TMEM254Q8TBM7 123 aa10.05□□□□□ -0.8
HIF3A-207ENST00000475432 MRPL34Q9BQ48 92 aaKnown RBP10.04□□□□□ -0.8
HIF3A-207ENST00000475432 TRAV7A0A075B6U4 112 aa10.03□□□□□ -0.8
HIF3A-207ENST00000475432 COX7CP15954 63 aa10□□□□□ -0.81
HIF3A-207ENST00000475432 KRTAP16-1A8MUX0 517 aa9.99□□□□□ -0.81
HIF3A-207ENST00000475432 FP248Q71RG6 208 aaPredicted RBP9.99□□□□□ -0.81
HIF3A-207ENST00000475432 J3QL48 77 aa9.97□□□□□ -0.81
HIF3A-207ENST00000475432 NDUFS5O43920 106 aa9.97□□□□□ -0.81
HIF3A-207ENST00000475432 C9orf92A6NGG3 77 aa9.95□□□□□ -0.82
HIF3A-207ENST00000475432 UQCRQO14949 82 aa9.95□□□□□ -0.82
HIF3A-207ENST00000475432 CCDC179H3BU77 68 aa9.95□□□□□ -0.82
HIF3A-207ENST00000475432 Q8N9P0 234 aaPredicted RBP9.94□□□□□ -0.82
HIF3A-207ENST00000475432 TP53AIP1Q9HCN2 124 aa9.93□□□□□ -0.82
HIF3A-207ENST00000475432 IGLV7-46A0A075B6I9 117 aa9.92□□□□□ -0.82
HIF3A-207ENST00000475432 PRR4Q16378 134 aa9.88□□□□□ -0.83
HIF3A-207ENST00000475432 C5orf47Q569G3 176 aa9.88□□□□□ -0.83
HIF3A-207ENST00000475432 PCLOQ9Y6V0 5065 aa9.88□□□□□ -0.83
HIF3A-207ENST00000475432 C20orf197Q8N268 126 aa9.87□□□□□ -0.83
HIF3A-207ENST00000475432 TRAV22A0A0B4J277 110 aa9.85□□□□□ -0.83
HIF3A-207ENST00000475432 KRTAP13-3Q3SY46 172 aa9.84□□□□□ -0.83
HIF3A-207ENST00000475432 H0Y9P7 68 aa9.83□□□□□ -0.84
HIF3A-207ENST00000475432 MP68P56378 58 aa9.82□□□□□ -0.84
HIF3A-207ENST00000475432 Q5W150 140 aa9.82□□□□□ -0.84
HIF3A-207ENST00000475432 C20orf166-AS1Q96NR2 134 aa9.82□□□□□ -0.84
HIF3A-207ENST00000475432 SNURFQ9Y675 71 aa9.82□□□□□ -0.84
HIF3A-207ENST00000475432 A0A0U1RQV1 116 aa9.8□□□□□ -0.84
HIF3A-207ENST00000475432 A8MUU9 505 aa9.8□□□□□ -0.84
HIF3A-207ENST00000475432 KLKP1Q107X0 134 aa9.8□□□□□ -0.84
HIF3A-207ENST00000475432 CYSTM1Q9H1C7 97 aa9.79□□□□□ -0.84
HIF3A-207ENST00000475432 LINC00208Q96KT6 92 aa9.77□□□□□ -0.85
HIF3A-207ENST00000475432 H3BPC8 53 aa9.75□□□□□ -0.85
HIF3A-207ENST00000475432 TPRXLQ17RH7 258 aa9.75□□□□□ -0.85
HIF3A-207ENST00000475432 XP32Q5T750 250 aa9.75□□□□□ -0.85
HIF3A-207ENST00000475432 Q75L30 129 aa9.75□□□□□ -0.85
HIF3A-207ENST00000475432 ZCCHC13Q8WW36 166 aaKnown RBP9.75□□□□□ -0.85
HIF3A-207ENST00000475432 C1orf64Q8NEQ6 169 aa9.74□□□□□ -0.85
HIF3A-207ENST00000475432 RPL37P61927 97 aaKnown RBP9.67□□□□□ -0.86
HIF3A-207ENST00000475432 LOC101927531A0A1B0GV80 90 aa9.66□□□□□ -0.86
HIF3A-207ENST00000475432 H7BZZ5 65 aa9.66□□□□□ -0.86
HIF3A-207ENST00000475432 NDUFC1O43677 76 aa9.65□□□□□ -0.86
HIF3A-207ENST00000475432 LPAP08519 4548 aa9.63□□□□□ -0.87
HIF3A-207ENST00000475432 HERC1Q15751 4861 aa9.62□□□□□ -0.87
HIF3A-207ENST00000475432 ATP11AUNQ6ZP68 121 aa9.62□□□□□ -0.87
HIF3A-207ENST00000475432 IGKV2-30P06310 120 aa9.61□□□□□ -0.87
HIF3A-207ENST00000475432 CYP4F30PQ9H0H9 118 aa9.61□□□□□ -0.87
HIF3A-207ENST00000475432 IGKV2D-30A0A075B6S6 120 aa9.6□□□□□ -0.87
HIF3A-207ENST00000475432 PCOTHQ58A44 107 aa9.58□□□□□ -0.88
HIF3A-207ENST00000475432 LRP2P98164 4655 aa9.56□□□□□ -0.88
HIF3A-207ENST00000475432 TMEM258P61165 79 aa9.56□□□□□ -0.88
HIF3A-207ENST00000475432 C7orf65Q6ZTY9 151 aa9.54□□□□□ -0.88
HIF3A-207ENST00000475432 SPINK7P58062 85 aa9.49□□□□□ -0.89
HIF3A-207ENST00000475432 HMCN2Q8NDA2 5059 aa9.48□□□□□ -0.89
HIF3A-207ENST00000475432 FAM236DA0A1B0GTK5 79 aa9.48□□□□□ -0.89
HIF3A-207ENST00000475432 FAM236CP0DP71 79 aa9.48□□□□□ -0.89
HIF3A-207ENST00000475432 HRES1P13985 223 aa9.46□□□□□ -0.89
HIF3A-207ENST00000475432 SPANXA2-OT1Q8N9U9 137 aa9.46□□□□□ -0.89
HIF3A-207ENST00000475432 ATP5EP56381 51 aaPredicted RBP9.42□□□□□ -0.9
HIF3A-207ENST00000475432 SEC61BP60468 96 aaKnown RBP9.41□□□□□ -0.9
HIF3A-207ENST00000475432 C4orf26Q17RF5 130 aa9.35□□□□□ -0.91
HIF3A-207ENST00000475432 DMAC1Q96GE9 116 aa9.3□□□□□ -0.92
HIF3A-207ENST00000475432 SERP1Q9Y6X1 66 aa9.26□□□□□ -0.93
HIF3A-207ENST00000475432 MUC17Q685J3 4493 aa9.25□□□□□ -0.93
HIF3A-207ENST00000475432 KRTAP4-1Q9BYQ7 146 aa9.24□□□□□ -0.93
HIF3A-207ENST00000475432 COX6B2Q6YFQ2 88 aa9.23□□□□□ -0.93
HIF3A-207ENST00000475432 KRTAP3-1Q9BYR8 98 aa9.23□□□□□ -0.93
HIF3A-207ENST00000475432 ACYP2P14621 99 aa9.22□□□□□ -0.93
HIF3A-207ENST00000475432 A8MUN3 132 aa9.21□□□□□ -0.93
HIF3A-207ENST00000475432 RPS28P62857 69 aaKnown RBP9.2□□□□□ -0.94
HIF3A-207ENST00000475432 COA5Q86WW8 74 aa9.19□□□□□ -0.94
HIF3A-207ENST00000475432 MPLKIPQ8TAP9 179 aa9.19□□□□□ -0.94
HIF3A-207ENST00000475432 RBM12B-AS1Q9P1G2 102 aa9.13□□□□□ -0.95
HIF3A-207ENST00000475432 MUC2Q02817 5179 aa9.12□□□□□ -0.95
HIF3A-207ENST00000475432 UBR4Q5T4S7 5183 aa9.11□□□□□ -0.95
HIF3A-207ENST00000475432 CHKB-CPT1BH3BT56 60 aa9.08□□□□□ -0.96
HIF3A-207ENST00000475432 SEC61GP60059 68 aa9.04□□□□□ -0.96
HIF3A-207ENST00000475432 H1FX-AS1Q4G0G2 97 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms