RNA–Protein interactions for RNA: ENST00000469535.5

CD46-212, Transcript of CD46 molecule, humanhuman

TSL 1 (best)

Gene CD46, Length 7,826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-212ENST00000469535 VPS13AQ96RL7 3174 aa3.7□□□□□ -1.82
CD46-212ENST00000469535 ITPR1Q14643 2758 aa3.69□□□□□ -1.82
CD46-212ENST00000469535 COL6A3P12111 3177 aa3.69□□□□□ -1.82
CD46-212ENST00000469535 TACC2O95359 2948 aa3.69□□□□□ -1.82
CD46-212ENST00000469535 KRTAP16-1A8MUX0 517 aa3.68□□□□□ -1.82
CD46-212ENST00000469535 NDUFAF8A1L188 74 aa3.68□□□□□ -1.82
CD46-212ENST00000469535 UTP20O75691 2785 aaKnown RBP3.67□□□□□ -1.82
CD46-212ENST00000469535 TENM4Q6N022 2769 aa3.67□□□□□ -1.82
CD46-212ENST00000469535 HIVEP1P15822 2718 aa3.67□□□□□ -1.82
CD46-212ENST00000469535 TNRC18O15417 2968 aaPredicted RBP3.66□□□□□ -1.82
CD46-212ENST00000469535 KRTAP13-3Q3SY46 172 aa3.66□□□□□ -1.82
CD46-212ENST00000469535 SZT2Q5T011 3432 aa3.65□□□□□ -1.82
CD46-212ENST00000469535 APCP25054 2843 aa3.65□□□□□ -1.82
CD46-212ENST00000469535 CFAP47Q6ZTR5 3102 aa3.65□□□□□ -1.83
CD46-212ENST00000469535 DMXL2Q8TDJ6 3036 aa3.65□□□□□ -1.83
CD46-212ENST00000469535 KALRNO60229 2985 aa3.65□□□□□ -1.83
CD46-212ENST00000469535 VCANP13611 3396 aa3.65□□□□□ -1.83
CD46-212ENST00000469535 COL12A1Q99715 3063 aa3.64□□□□□ -1.83
CD46-212ENST00000469535 ATMQ13315 3056 aa3.64□□□□□ -1.83
CD46-212ENST00000469535 A6NN06 94 aa3.64□□□□□ -1.83
CD46-212ENST00000469535 PP632Q6XCG6 107 aa3.63□□□□□ -1.83
CD46-212ENST00000469535 LRBAP50851 2863 aa3.63□□□□□ -1.83
CD46-212ENST00000469535 LAMA1P25391 3075 aa3.62□□□□□ -1.83
CD46-212ENST00000469535 DNAH14Q0VDD8 3507 aa3.62□□□□□ -1.83
CD46-212ENST00000469535 FRYLO94915 3013 aa3.61□□□□□ -1.83
CD46-212ENST00000469535 SPEGQ15772 3267 aa3.59□□□□□ -1.83
CD46-212ENST00000469535 EYSQ5T1H1 3165 aa3.59□□□□□ -1.84
CD46-212ENST00000469535 P0C880 135 aa3.59□□□□□ -1.84
CD46-212ENST00000469535 ASH1LQ9NR48 2969 aaKnown RBP3.58□□□□□ -1.84
CD46-212ENST00000469535 BOD1L1Q8NFC6 3051 aa3.57□□□□□ -1.84
CD46-212ENST00000469535 FLNCQ14315 2725 aa3.57□□□□□ -1.84
CD46-212ENST00000469535 H0YAA0 97 aa3.55□□□□□ -1.84
CD46-212ENST00000469535 USP34Q70CQ2 3546 aa3.54□□□□□ -1.84
CD46-212ENST00000469535 TENM2Q9NT68 2774 aa3.54□□□□□ -1.84
CD46-212ENST00000469535 ADGRG4Q8IZF6 3080 aa3.51□□□□□ -1.85
CD46-212ENST00000469535 CELSR2Q9HCU4 2923 aa3.51□□□□□ -1.85
CD46-212ENST00000469535 NBEAQ8NFP9 2946 aa3.51□□□□□ -1.85
CD46-212ENST00000469535 TENM1Q9UKZ4 2725 aa3.5□□□□□ -1.85
CD46-212ENST00000469535 SPTBN5Q9NRC6 3674 aaKnown RBP3.5□□□□□ -1.85
CD46-212ENST00000469535 ZZEF1O43149 2961 aa3.48□□□□□ -1.85
CD46-212ENST00000469535 DCHS2Q6V1P9 2916 aa3.48□□□□□ -1.85
CD46-212ENST00000469535 NIPBLQ6KC79 2804 aaeCLIP3.43□□□□□ -1.866e-8■■■■■ 30.6
CD46-212ENST00000469535 DMXL1Q9Y485 3027 aa3.43□□□□□ -1.86
CD46-212ENST00000469535 KRTAP12-2P59991 146 aa3.41□□□□□ -1.86
CD46-212ENST00000469535 NF1P21359 2839 aa3.41□□□□□ -1.86
CD46-212ENST00000469535 TENM3Q9P273 2699 aa3.4□□□□□ -1.86
CD46-212ENST00000469535 NBPF19A0A087WUL8 3843 aa3.4□□□□□ -1.87
CD46-212ENST00000469535 CELSR1Q9NYQ6 3014 aa3.39□□□□□ -1.87
CD46-212ENST00000469535 CRCT1Q9UGL9 99 aa3.38□□□□□ -1.87
CD46-212ENST00000469535 KRTAP15-1Q3LI76 137 aa3.37□□□□□ -1.87
CD46-212ENST00000469535 KRTAP13-4Q3LI77 160 aa3.35□□□□□ -1.87
CD46-212ENST00000469535 PKD1L1Q8TDX9 2849 aa3.35□□□□□ -1.87
CD46-212ENST00000469535 ZANQ9Y493 2812 aa3.34□□□□□ -1.87
CD46-212ENST00000469535 PDZD2O15018 2839 aa3.33□□□□□ -1.88
CD46-212ENST00000469535 HRNRQ86YZ3 2850 aaPredicted RBP3.33□□□□□ -1.88
CD46-212ENST00000469535 ASPMQ8IZT6 3477 aa3.32□□□□□ -1.88
CD46-212ENST00000469535 FBN2P35556 2912 aa3.31□□□□□ -1.88
CD46-212ENST00000469535 VWFP04275 2813 aa3.31□□□□□ -1.88
CD46-212ENST00000469535 WDFY3Q8IZQ1 3526 aa3.31□□□□□ -1.88
CD46-212ENST00000469535 TGP01266 2768 aa3.31□□□□□ -1.88
CD46-212ENST00000469535 KRTAP12-1P59990 96 aa3.3□□□□□ -1.88
CD46-212ENST00000469535 LOC400499M0QZD8 3231 aa3.29□□□□□ -1.88
CD46-212ENST00000469535 KRTAP4-5Q9BYR2 181 aa3.29□□□□□ -1.88
CD46-212ENST00000469535 MYO15AQ9UKN7 3530 aa3.27□□□□□ -1.89
CD46-212ENST00000469535 RELNP78509 3460 aa3.26□□□□□ -1.89
CD46-212ENST00000469535 ZFHX4Q86UP3 3567 aa3.25□□□□□ -1.89
CD46-212ENST00000469535 OTOGQ6ZRI0 2925 aa3.25□□□□□ -1.89
CD46-212ENST00000469535 KRTAP3-1Q9BYR8 98 aa3.25□□□□□ -1.89
CD46-212ENST00000469535 MT1HL1P0DM35 61 aa3.24□□□□□ -1.89
CD46-212ENST00000469535 MXRA5Q9NR99 2828 aa3.24□□□□□ -1.89
CD46-212ENST00000469535 DCHS1Q96JQ0 3298 aa3.23□□□□□ -1.89
CD46-212ENST00000469535 ANK3Q12955 4377 aaKnown RBP3.22□□□□□ -1.89
CD46-212ENST00000469535 ZFHX3Q15911 3703 aa3.21□□□□□ -1.9
CD46-212ENST00000469535 KRTAP10-12P60413 245 aa3.21□□□□□ -1.9
CD46-212ENST00000469535 FBN3Q75N90 2809 aa3.17□□□□□ -1.9
CD46-212ENST00000469535 LORP23490 312 aaPredicted RBP3.14□□□□□ -1.91
CD46-212ENST00000469535 LAMA5O15230 3695 aa3.13□□□□□ -1.91
CD46-212ENST00000469535 KRTAP10-6P60371 365 aaPredicted RBP3.13□□□□□ -1.91
CD46-212ENST00000469535 ALMS1Q8TCU4 4167 aa3.11□□□□□ -1.91
CD46-212ENST00000469535 FBN1P35555 2871 aaKnown RBP3.1□□□□□ -1.91
CD46-212ENST00000469535 CSMD1Q96PZ7 3565 aa3.1□□□□□ -1.91
CD46-212ENST00000469535 MUC3AQ02505 3323 aa3.09□□□□□ -1.91
CD46-212ENST00000469535 KRTAP8-1Q8IUC2 63 aa3.09□□□□□ -1.91
CD46-212ENST00000469535 BIRC6Q9NR09 4857 aa3.09□□□□□ -1.92
CD46-212ENST00000469535 SRRM2Q9UQ35 2752 aaKnown RBP3.08□□□□□ -1.92
CD46-212ENST00000469535 RYR1P21817 5038 aa3.08□□□□□ -1.92
CD46-212ENST00000469535 KRTAP10-4P60372 401 aaPredicted RBP3.07□□□□□ -1.92
CD46-212ENST00000469535 HUWE1Q7Z6Z7 4374 aaKnown RBP3.06□□□□□ -1.92
CD46-212ENST00000469535 KRTAP12-3P60328 96 aa3.06□□□□□ -1.92
CD46-212ENST00000469535 CSMD2Q7Z408 3487 aa3.05□□□□□ -1.92
CD46-212ENST00000469535 DNAH11Q96DT5 4516 aa3.05□□□□□ -1.92
CD46-212ENST00000469535 HERC1Q15751 4861 aa3.05□□□□□ -1.92
CD46-212ENST00000469535 DMDP11532 3685 aa3.05□□□□□ -1.92
CD46-212ENST00000469535 LCE3AQ5TA76 89 aa3.04□□□□□ -1.92
CD46-212ENST00000469535 DNHD1Q96M86 4753 aa3.03□□□□□ -1.92
CD46-212ENST00000469535 KRTAP3-3Q9BYR6 98 aa3.02□□□□□ -1.93
CD46-212ENST00000469535 MEGF8Q7Z7M0 2845 aa3.02□□□□□ -1.93
CD46-212ENST00000469535 DNAH10Q8IVF4 4471 aa3.02□□□□□ -1.93
CD46-212ENST00000469535 PLECQ15149 4684 aaKnown RBP3.02□□□□□ -1.93
CD46-212ENST00000469535 RYR2Q92736 4967 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms