RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 SPEGQ15772 3267 aa6.36□□□□□ -1.39
PTCH1-209ENST00000437951 FLNCQ14315 2725 aa6.36□□□□□ -1.39
PTCH1-209ENST00000437951 KRTAP13-1Q8IUC0 172 aa6.36□□□□□ -1.39
PTCH1-209ENST00000437951 DMXL2Q8TDJ6 3036 aa6.35□□□□□ -1.39
PTCH1-209ENST00000437951 COL6A3P12111 3177 aa6.35□□□□□ -1.39
PTCH1-209ENST00000437951 LRBAP50851 2863 aa6.35□□□□□ -1.39
PTCH1-209ENST00000437951 TENM1Q9UKZ4 2725 aa6.34□□□□□ -1.39
PTCH1-209ENST00000437951 CFAP47Q6ZTR5 3102 aa6.32□□□□□ -1.4
PTCH1-209ENST00000437951 ITPR1Q14643 2758 aa6.3□□□□□ -1.4
PTCH1-209ENST00000437951 VCANP13611 3396 aa6.3□□□□□ -1.4
PTCH1-209ENST00000437951 H0YAA0 97 aa6.3□□□□□ -1.4
PTCH1-209ENST00000437951 USP34Q70CQ2 3546 aa6.29□□□□□ -1.4
PTCH1-209ENST00000437951 SZT2Q5T011 3432 aa6.28□□□□□ -1.4
PTCH1-209ENST00000437951 COL12A1Q99715 3063 aa6.28□□□□□ -1.4
PTCH1-209ENST00000437951 BOD1L1Q8NFC6 3051 aa6.25□□□□□ -1.41
PTCH1-209ENST00000437951 KRTAP13-2Q52LG2 175 aa6.25□□□□□ -1.41
PTCH1-209ENST00000437951 CHD9Q3L8U1 2897 aa6.24□□□□□ -1.41
PTCH1-209ENST00000437951 KRTAP7-1Q8IUC3 87 aa6.22□□□□□ -1.41
PTCH1-209ENST00000437951 PRO2289Q9P1D8 64 aa6.22□□□□□ -1.41
PTCH1-209ENST00000437951 NF1P21359 2839 aa6.2□□□□□ -1.42
PTCH1-209ENST00000437951 KRTAP10-8P60410 259 aa6.19□□□□□ -1.42
PTCH1-209ENST00000437951 TENM3Q9P273 2699 aa6.19□□□□□ -1.42
PTCH1-209ENST00000437951 HIVEP1P15822 2718 aa6.17□□□□□ -1.42
PTCH1-209ENST00000437951 ZZEF1O43149 2961 aa6.17□□□□□ -1.42
PTCH1-209ENST00000437951 ATMQ13315 3056 aa6.16□□□□□ -1.42
PTCH1-209ENST00000437951 ADGRG4Q8IZF6 3080 aa6.15□□□□□ -1.42
PTCH1-209ENST00000437951 TNRC18O15417 2968 aaPredicted RBP6.12□□□□□ -1.43
PTCH1-209ENST00000437951 TACC2O95359 2948 aa6.11□□□□□ -1.43
PTCH1-209ENST00000437951 KRTAP21-3Q3LHN1 58 aa6.11□□□□□ -1.43
PTCH1-209ENST00000437951 CELSR2Q9HCU4 2923 aa6.11□□□□□ -1.43
PTCH1-209ENST00000437951 NBEAQ8NFP9 2946 aa6.08□□□□□ -1.44
PTCH1-209ENST00000437951 EYSQ5T1H1 3165 aa6.06□□□□□ -1.44
PTCH1-209ENST00000437951 DMXL1Q9Y485 3027 aa6.06□□□□□ -1.44
PTCH1-209ENST00000437951 NIPBLQ6KC79 2804 aaeCLIP6.05□□□□□ -1.44
PTCH1-209ENST00000437951 KRTAP10-10P60014 251 aa6□□□□□ -1.45
PTCH1-209ENST00000437951 WDFY3Q8IZQ1 3526 aa6□□□□□ -1.45
PTCH1-209ENST00000437951 SPTBN5Q9NRC6 3674 aaKnown RBP5.99□□□□□ -1.45
PTCH1-209ENST00000437951 XP32Q5T750 250 aa5.98□□□□□ -1.45
PTCH1-209ENST00000437951 PDZD2O15018 2839 aa5.98□□□□□ -1.45
PTCH1-209ENST00000437951 INE1O15225 51 aa5.97□□□□□ -1.45
PTCH1-209ENST00000437951 TENM4Q6N022 2769 aa5.96□□□□□ -1.46
PTCH1-209ENST00000437951 CELSR1Q9NYQ6 3014 aa5.95□□□□□ -1.46
PTCH1-209ENST00000437951 A0A1B0GVY2 172 aa5.95□□□□□ -1.46
PTCH1-209ENST00000437951 ASPMQ8IZT6 3477 aa5.94□□□□□ -1.46
PTCH1-209ENST00000437951 TPRXLQ17RH7 258 aa5.93□□□□□ -1.46
PTCH1-209ENST00000437951 KRTAP13-4Q3LI77 160 aa5.93□□□□□ -1.46
PTCH1-209ENST00000437951 DCHS2Q6V1P9 2916 aa5.92□□□□□ -1.46
PTCH1-209ENST00000437951 LOC400499M0QZD8 3231 aa5.9□□□□□ -1.46
PTCH1-209ENST00000437951 NBPF19A0A087WUL8 3843 aa5.9□□□□□ -1.47
PTCH1-209ENST00000437951 MYO15AQ9UKN7 3530 aa5.89□□□□□ -1.47
PTCH1-209ENST00000437951 TGP01266 2768 aa5.88□□□□□ -1.47
PTCH1-209ENST00000437951 KRTAP1-4P0C5Y4 121 aa5.87□□□□□ -1.47
PTCH1-209ENST00000437951 PKD1L1Q8TDX9 2849 aa5.85□□□□□ -1.47
PTCH1-209ENST00000437951 VWFP04275 2813 aa5.83□□□□□ -1.48
PTCH1-209ENST00000437951 KRTAP12-2P59991 146 aa5.82□□□□□ -1.48
PTCH1-209ENST00000437951 KRTAP13-3Q3SY46 172 aa5.81□□□□□ -1.48
PTCH1-209ENST00000437951 ZFHX4Q86UP3 3567 aa5.81□□□□□ -1.48
PTCH1-209ENST00000437951 DCHS1Q96JQ0 3298 aa5.8□□□□□ -1.48
PTCH1-209ENST00000437951 FBN2P35556 2912 aa5.79□□□□□ -1.48
PTCH1-209ENST00000437951 LAMA5O15230 3695 aa5.79□□□□□ -1.48
PTCH1-209ENST00000437951 ZANQ9Y493 2812 aa5.78□□□□□ -1.48
PTCH1-209ENST00000437951 TENM2Q9NT68 2774 aa5.74□□□□□ -1.49
PTCH1-209ENST00000437951 KRTAP12-1P59990 96 aa5.72□□□□□ -1.49
PTCH1-209ENST00000437951 KRTAP15-1Q3LI76 137 aa5.64□□□□□ -1.51
PTCH1-209ENST00000437951 CSMD1Q96PZ7 3565 aa5.63□□□□□ -1.51
PTCH1-209ENST00000437951 COL7A1Q02388 2944 aa5.62□□□□□ -1.51
PTCH1-209ENST00000437951 RELNP78509 3460 aa5.6□□□□□ -1.51
PTCH1-209ENST00000437951 ZFHX3Q15911 3703 aa5.59□□□□□ -1.51
PTCH1-209ENST00000437951 HRNRQ86YZ3 2850 aaPredicted RBP5.59□□□□□ -1.51
PTCH1-209ENST00000437951 MXRA5Q9NR99 2828 aa5.56□□□□□ -1.52
PTCH1-209ENST00000437951 SPENQ96T58 3664 aaKnown RBP5.54□□□□□ -1.52
PTCH1-209ENST00000437951 SRRM2Q9UQ35 2752 aaKnown RBP5.54□□□□□ -1.52
PTCH1-209ENST00000437951 SMG1Q96Q15 3661 aaKnown RBP5.49□□□□□ -1.53
PTCH1-209ENST00000437951 MEGF8Q7Z7M0 2845 aa5.48□□□□□ -1.53
PTCH1-209ENST00000437951 KRTAP23-1A1A580 65 aa5.45□□□□□ -1.54
PTCH1-209ENST00000437951 CUBNO60494 3623 aa5.39□□□□□ -1.55
PTCH1-209ENST00000437951 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
PTCH1-209ENST00000437951 KRTAP3-1Q9BYR8 98 aa5.38□□□□□ -1.55
PTCH1-209ENST00000437951 DMDP11532 3685 aa5.38□□□□□ -1.55
PTCH1-209ENST00000437951 SVEP1Q4LDE5 3571 aa5.3□□□□□ -1.56
PTCH1-209ENST00000437951 KRTAP10-12P60413 245 aa5.24□□□□□ -1.57
PTCH1-209ENST00000437951 FBN1P35555 2871 aaKnown RBP5.21□□□□□ -1.58
PTCH1-209ENST00000437951 FBN3Q75N90 2809 aa5.2□□□□□ -1.58
PTCH1-209ENST00000437951 TRRAPQ9Y4A5 3859 aa5.19□□□□□ -1.58
PTCH1-209ENST00000437951 MUC3AQ02505 3323 aa5.19□□□□□ -1.58
PTCH1-209ENST00000437951 VPS13CQ709C8 3753 aa5.18□□□□□ -1.58
PTCH1-209ENST00000437951 CRCT1Q9UGL9 99 aa5.17□□□□□ -1.58
PTCH1-209ENST00000437951 KRTAP3-2Q9BYR7 98 aa5.13□□□□□ -1.59
PTCH1-209ENST00000437951 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
PTCH1-209ENST00000437951 CSMD2Q7Z408 3487 aa5.1□□□□□ -1.59
PTCH1-209ENST00000437951 CSMD3Q7Z407 3707 aa5.06□□□□□ -1.6
PTCH1-209ENST00000437951 KRTAP3-3Q9BYR6 98 aa5.05□□□□□ -1.6
PTCH1-209ENST00000437951 BSNQ9UPA5 3926 aa5.04□□□□□ -1.6
PTCH1-209ENST00000437951 OTOGQ6ZRI0 2925 aa5.03□□□□□ -1.6
PTCH1-209ENST00000437951 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
PTCH1-209ENST00000437951 AKAP9Q99996 3911 aa4.88□□□□□ -1.63
PTCH1-209ENST00000437951 KRTAP10-5P60370 271 aa4.86□□□□□ -1.63
PTCH1-209ENST00000437951 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
PTCH1-209ENST00000437951 ALMS1Q8TCU4 4167 aa4.77□□□□□ -1.65
PTCH1-209ENST00000437951 ANK3Q12955 4377 aaKnown RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms