RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 TEP1Q99973 2627 aaKnown RBP0.72□□□□□ -2.29
SF3B1-205ENST00000424674 ATRQ13535 2644 aa0.71□□□□□ -2.3
SF3B1-205ENST00000424674 SACSQ9NZJ4 4579 aa0.71□□□□□ -2.3
SF3B1-205ENST00000424674 MUC2Q02817 5179 aa0.71□□□□□ -2.3
SF3B1-205ENST00000424674 TNRC18O15417 2968 aaPredicted RBP0.71□□□□□ -2.3
SF3B1-205ENST00000424674 SPRR2DP22532 72 aa0.71□□□□□ -2.3
SF3B1-205ENST00000424674 NCOR1O75376 2440 aa0.71□□□□□ -2.3
SF3B1-205ENST00000424674 APCP25054 2843 aa0.7□□□□□ -2.3
SF3B1-205ENST00000424674 KIAA1109Q2LD37 5005 aa0.7□□□□□ -2.3
SF3B1-205ENST00000424674 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
SF3B1-205ENST00000424674 USP9XQ93008 2570 aaPredicted RBP0.7□□□□□ -2.3
SF3B1-205ENST00000424674 CHD6Q8TD26 2715 aa0.7□□□□□ -2.3
SF3B1-205ENST00000424674 SETXQ7Z333 2677 aaKnown RBP0.7□□□□□ -2.3
SF3B1-205ENST00000424674 HUWE1Q7Z6Z7 4374 aaKnown RBP0.69□□□□□ -2.3
SF3B1-205ENST00000424674 CEP290O15078 2479 aa0.69□□□□□ -2.3
SF3B1-205ENST00000424674 SPRR2BP35325 72 aa0.69□□□□□ -2.3
SF3B1-205ENST00000424674 LYSTQ99698 3801 aa0.69□□□□□ -2.3
SF3B1-205ENST00000424674 COL6A5A8TX70 2615 aa0.68□□□□□ -2.3
SF3B1-205ENST00000424674 SPTA1P02549 2419 aa0.68□□□□□ -2.3
SF3B1-205ENST00000424674 MACF1Q9UPN3 7388 aaKnown RBP0.68□□□□□ -2.3
SF3B1-205ENST00000424674 KRTAP5-10Q6L8G5 202 aa0.68□□□□□ -2.3
SF3B1-205ENST00000424674 HECTD1Q9ULT8 2610 aa0.68□□□□□ -2.3
SF3B1-205ENST00000424674 SETD2Q9BYW2 2564 aaPredicted RBP0.68□□□□□ -2.3
SF3B1-205ENST00000424674 SRCAPQ6ZRS2 3230 aa0.68□□□□□ -2.3
SF3B1-205ENST00000424674 SRRM2Q9UQ35 2752 aaKnown RBP0.68□□□□□ -2.3
SF3B1-205ENST00000424674 DOPEY1Q5JWR5 2465 aa0.67□□□□□ -2.3
SF3B1-205ENST00000424674 MYCBP2O75592 4640 aa0.67□□□□□ -2.3
SF3B1-205ENST00000424674 NAV2Q8IVL1 2488 aa0.67□□□□□ -2.3
SF3B1-205ENST00000424674 CHD7Q9P2D1 2997 aa0.67□□□□□ -2.3
SF3B1-205ENST00000424674 PTPN13Q12923 2485 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 CHD8Q9HCK8 2581 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 ANKHD1Q8IWZ3 2542 aaKnown RBP0.66□□□□□ -2.3
SF3B1-205ENST00000424674 PIEZO1Q92508 2521 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 MAST4O15021 2626 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 EPG5Q9HCE0 2579 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 UBR5O95071 2799 aaPredicted RBP0.66□□□□□ -2.3
SF3B1-205ENST00000424674 VPS13DQ5THJ4 4388 aa0.66□□□□□ -2.3
SF3B1-205ENST00000424674 DNAH11Q96DT5 4516 aa0.65□□□□□ -2.3
SF3B1-205ENST00000424674 KMT2AQ03164 3969 aa0.65□□□□□ -2.31
SF3B1-205ENST00000424674 KRTAP8-1Q8IUC2 63 aa0.65□□□□□ -2.31
SF3B1-205ENST00000424674 ITPR3Q14573 2671 aa0.64□□□□□ -2.31
SF3B1-205ENST00000424674 PCLOQ9Y6V0 5065 aa0.64□□□□□ -2.31
SF3B1-205ENST00000424674 PKD1L1Q8TDX9 2849 aa0.64□□□□□ -2.31
SF3B1-205ENST00000424674 VPS13BQ7Z7G8 4022 aa0.64□□□□□ -2.31
SF3B1-205ENST00000424674 WNK1Q9H4A3 2382 aa0.64□□□□□ -2.31
SF3B1-205ENST00000424674 SYNE2Q8WXH0 6885 aaKnown RBP0.63□□□□□ -2.31
SF3B1-205ENST00000424674 PCNTO95613 3336 aa0.63□□□□□ -2.31
SF3B1-205ENST00000424674 H3BUX3 64 aa0.63□□□□□ -2.31
SF3B1-205ENST00000424674 RHPN1-AS1Q9BWJ2 59 aa0.63□□□□□ -2.31
SF3B1-205ENST00000424674 TENM2Q9NT68 2774 aa0.62□□□□□ -2.31
SF3B1-205ENST00000424674 MT1AP04731 61 aa0.62□□□□□ -2.31
SF3B1-205ENST00000424674 RPL39P5Q59GN2 51 aa0.62□□□□□ -2.31
SF3B1-205ENST00000424674 CEP350Q5VT06 3117 aa0.62□□□□□ -2.31
SF3B1-205ENST00000424674 FSIP2Q5CZC0 6907 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 PDZD2O15018 2839 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 LPAP08519 4548 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 SPRR2AP35326 72 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 ACANP16112 2415 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 CELSR3Q9NYQ7 3312 aa0.61□□□□□ -2.31
SF3B1-205ENST00000424674 AHNAKQ09666 5890 aaKnown RBP0.61□□□□□ -2.31
SF3B1-205ENST00000424674 HIVEP3Q5T1R4 2406 aa0.6□□□□□ -2.31
SF3B1-205ENST00000424674 LRP1Q07954 4544 aaKnown RBP0.6□□□□□ -2.31
SF3B1-205ENST00000424674 MGAQ8IWI9 3026 aa0.6□□□□□ -2.31
SF3B1-205ENST00000424674 CREBBPQ92793 2442 aa0.6□□□□□ -2.31
SF3B1-205ENST00000424674 MYO18BQ8IUG5 2567 aa0.6□□□□□ -2.31
SF3B1-205ENST00000424674 MAP1BP46821 2468 aaKnown RBP0.6□□□□□ -2.31
SF3B1-205ENST00000424674 FRYQ5TBA9 3013 aa0.59□□□□□ -2.31
SF3B1-205ENST00000424674 CRYBG3Q68DQ2 2970 aa0.59□□□□□ -2.31
SF3B1-205ENST00000424674 NBASA2RRP1 2371 aa0.59□□□□□ -2.31
SF3B1-205ENST00000424674 CCDC168Q8NDH2 2452 aa0.59□□□□□ -2.32
SF3B1-205ENST00000424674 PKD1P98161 4303 aa0.59□□□□□ -2.32
SF3B1-205ENST00000424674 ANK3Q12955 4377 aaKnown RBP0.59□□□□□ -2.32
SF3B1-205ENST00000424674 ZZEF1O43149 2961 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 NCOR2Q9Y618 2525 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 DEFB108AA8MXU0 73 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 DNAH2Q9P225 4427 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 DMBT1Q9UGM3 2413 aaPredicted RBP0.58□□□□□ -2.32
SF3B1-205ENST00000424674 VCANP13611 3396 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 ZFHX4Q86UP3 3567 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 PKHD1L1Q86WI1 4243 aa0.58□□□□□ -2.32
SF3B1-205ENST00000424674 DYNC2H1Q8NCM8 4307 aaKnown RBP0.57□□□□□ -2.32
SF3B1-205ENST00000424674 DNAH3Q8TD57 4116 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 HSPG2P98160 4391 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 NEBP20929 6669 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 APC2O95996 2303 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 WDFY4Q6ZS81 3184 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 NBPF19A0A087WUL8 3843 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 SPTBN4Q9H254 2564 aa0.57□□□□□ -2.32
SF3B1-205ENST00000424674 FASNP49327 2511 aaKnown RBP0.57□□□□□ -2.32
SF3B1-205ENST00000424674 SYNE1Q8NF91 8797 aaKnown RBP0.56□□□□□ -2.32
SF3B1-205ENST00000424674 KRTAP20-1Q3LI63 56 aa0.56□□□□□ -2.32
SF3B1-205ENST00000424674 KRTAP6-2Q3LI66 62 aa0.56□□□□□ -2.32
SF3B1-205ENST00000424674 NSD1Q96L73 2696 aaPredicted RBP0.56□□□□□ -2.32
SF3B1-205ENST00000424674 SPG11Q96JI7 2443 aa0.56□□□□□ -2.32
SF3B1-205ENST00000424674 FLNCQ14315 2725 aa0.56□□□□□ -2.32
SF3B1-205ENST00000424674 NF1P21359 2839 aa0.56□□□□□ -2.32
SF3B1-205ENST00000424674 FLNBO75369 2602 aaKnown RBP0.55□□□□□ -2.32
SF3B1-205ENST00000424674 SPENQ96T58 3664 aaKnown RBP0.55□□□□□ -2.32
SF3B1-205ENST00000424674 DSTQ03001 7570 aaKnown RBP0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 1378.4 ms