RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 XP32Q5T750 250 aa3.68□□□□□ -1.82
SCN1A-204ENST00000423058 A0A1B0GVY2 172 aa3.68□□□□□ -1.82
SCN1A-204ENST00000423058 UNC80Q8N2C7 3258 aa3.67□□□□□ -1.82
SCN1A-204ENST00000423058 NIPBLQ6KC79 2804 aaeCLIP3.66□□□□□ -1.82
SCN1A-204ENST00000423058 ASH1LQ9NR48 2969 aaKnown RBP3.66□□□□□ -1.82
SCN1A-204ENST00000423058 USP34Q70CQ2 3546 aa3.65□□□□□ -1.82
SCN1A-204ENST00000423058 FREM2Q5SZK8 3169 aa3.63□□□□□ -1.83
SCN1A-204ENST00000423058 KRTAP7-1Q8IUC3 87 aa3.63□□□□□ -1.83
SCN1A-204ENST00000423058 FLNCQ14315 2725 aa3.63□□□□□ -1.83
SCN1A-204ENST00000423058 RANBP2P49792 3224 aaKnown RBP3.61□□□□□ -1.83
SCN1A-204ENST00000423058 HIVEP1P15822 2718 aa3.61□□□□□ -1.83
SCN1A-204ENST00000423058 TENM3Q9P273 2699 aa3.6□□□□□ -1.83
SCN1A-204ENST00000423058 LAMA3Q16787 3333 aa3.6□□□□□ -1.83
SCN1A-204ENST00000423058 COL12A1Q99715 3063 aa3.59□□□□□ -1.83
SCN1A-204ENST00000423058 DMXL2Q8TDJ6 3036 aa3.59□□□□□ -1.83
SCN1A-204ENST00000423058 CHD9Q3L8U1 2897 aa3.58□□□□□ -1.84
SCN1A-204ENST00000423058 LAMA1P25391 3075 aa3.58□□□□□ -1.84
SCN1A-204ENST00000423058 NF1P21359 2839 aa3.56□□□□□ -1.84
SCN1A-204ENST00000423058 DNAH14Q0VDD8 3507 aa3.55□□□□□ -1.84
SCN1A-204ENST00000423058 CELSR2Q9HCU4 2923 aa3.55□□□□□ -1.84
SCN1A-204ENST00000423058 KRTAP1-4P0C5Y4 121 aa3.55□□□□□ -1.84
SCN1A-204ENST00000423058 COL6A3P12111 3177 aa3.54□□□□□ -1.84
SCN1A-204ENST00000423058 BRCA2P51587 3418 aa3.54□□□□□ -1.84
SCN1A-204ENST00000423058 KRTAP13-3Q3SY46 172 aa3.53□□□□□ -1.84
SCN1A-204ENST00000423058 H0YAA0 97 aa3.53□□□□□ -1.84
SCN1A-204ENST00000423058 BOD1L1Q8NFC6 3051 aa3.52□□□□□ -1.85
SCN1A-204ENST00000423058 TNRC18O15417 2968 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-204ENST00000423058 TENM4Q6N022 2769 aa3.51□□□□□ -1.85
SCN1A-204ENST00000423058 SPEGQ15772 3267 aa3.51□□□□□ -1.85
SCN1A-204ENST00000423058 CDH23Q9H251 3354 aa3.5□□□□□ -1.85
SCN1A-204ENST00000423058 CELSR1Q9NYQ6 3014 aa3.5□□□□□ -1.85
SCN1A-204ENST00000423058 HTTP42858 3142 aa3.5□□□□□ -1.85
SCN1A-204ENST00000423058 ZZEF1O43149 2961 aa3.5□□□□□ -1.85
SCN1A-204ENST00000423058 TGP01266 2768 aa3.49□□□□□ -1.85
SCN1A-204ENST00000423058 CFAP47Q6ZTR5 3102 aa3.48□□□□□ -1.85
SCN1A-204ENST00000423058 VCANP13611 3396 aa3.48□□□□□ -1.85
SCN1A-204ENST00000423058 NBEAQ8NFP9 2946 aa3.48□□□□□ -1.85
SCN1A-204ENST00000423058 NBPF19A0A087WUL8 3843 aa3.47□□□□□ -1.85
SCN1A-204ENST00000423058 TACC2O95359 2948 aa3.47□□□□□ -1.85
SCN1A-204ENST00000423058 DCHS2Q6V1P9 2916 aa3.47□□□□□ -1.85
SCN1A-204ENST00000423058 ATMQ13315 3056 aa3.46□□□□□ -1.86
SCN1A-204ENST00000423058 ADGRG4Q8IZF6 3080 aa3.46□□□□□ -1.86
SCN1A-204ENST00000423058 PDZD2O15018 2839 aa3.45□□□□□ -1.86
SCN1A-204ENST00000423058 KRTAP13-4Q3LI77 160 aa3.42□□□□□ -1.86
SCN1A-204ENST00000423058 KRTAP12-2P59991 146 aa3.4□□□□□ -1.86
SCN1A-204ENST00000423058 TENM2Q9NT68 2774 aa3.38□□□□□ -1.87
SCN1A-204ENST00000423058 ZANQ9Y493 2812 aa3.38□□□□□ -1.87
SCN1A-204ENST00000423058 DMXL1Q9Y485 3027 aa3.38□□□□□ -1.87
SCN1A-204ENST00000423058 KRTAP15-1Q3LI76 137 aa3.37□□□□□ -1.87
SCN1A-204ENST00000423058 PKD1L1Q8TDX9 2849 aa3.36□□□□□ -1.87
SCN1A-204ENST00000423058 VWFP04275 2813 aa3.35□□□□□ -1.87
SCN1A-204ENST00000423058 SPTBN5Q9NRC6 3674 aaKnown RBP3.35□□□□□ -1.87
SCN1A-204ENST00000423058 INE1O15225 51 aa3.35□□□□□ -1.87
SCN1A-204ENST00000423058 FBN2P35556 2912 aa3.34□□□□□ -1.87
SCN1A-204ENST00000423058 SZT2Q5T011 3432 aa3.33□□□□□ -1.88
SCN1A-204ENST00000423058 ZFHX4Q86UP3 3567 aa3.33□□□□□ -1.88
SCN1A-204ENST00000423058 EYSQ5T1H1 3165 aa3.31□□□□□ -1.88
SCN1A-204ENST00000423058 HRNRQ86YZ3 2850 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-204ENST00000423058 MXRA5Q9NR99 2828 aa3.27□□□□□ -1.89
SCN1A-204ENST00000423058 KRTAP12-1P59990 96 aa3.27□□□□□ -1.89
SCN1A-204ENST00000423058 KRTAP23-1A1A580 65 aa3.27□□□□□ -1.89
SCN1A-204ENST00000423058 ASPMQ8IZT6 3477 aa3.25□□□□□ -1.89
SCN1A-204ENST00000423058 WDFY3Q8IZQ1 3526 aa3.24□□□□□ -1.89
SCN1A-204ENST00000423058 LOC400499M0QZD8 3231 aa3.24□□□□□ -1.89
SCN1A-204ENST00000423058 COL7A1Q02388 2944 aa3.23□□□□□ -1.89
SCN1A-204ENST00000423058 ZFHX3Q15911 3703 aa3.22□□□□□ -1.89
SCN1A-204ENST00000423058 KRTAP10-12P60413 245 aa3.19□□□□□ -1.9
SCN1A-204ENST00000423058 LAMA5O15230 3695 aa3.18□□□□□ -1.9
SCN1A-204ENST00000423058 MEGF8Q7Z7M0 2845 aa3.16□□□□□ -1.9
SCN1A-204ENST00000423058 CRCT1Q9UGL9 99 aa3.16□□□□□ -1.9
SCN1A-204ENST00000423058 MYO15AQ9UKN7 3530 aa3.15□□□□□ -1.91
SCN1A-204ENST00000423058 SRRM2Q9UQ35 2752 aaKnown RBP3.14□□□□□ -1.91
SCN1A-204ENST00000423058 SPENQ96T58 3664 aaKnown RBP3.12□□□□□ -1.91
SCN1A-204ENST00000423058 DCHS1Q96JQ0 3298 aa3.11□□□□□ -1.91
SCN1A-204ENST00000423058 DMDP11532 3685 aa3.08□□□□□ -1.92
SCN1A-204ENST00000423058 KRTAP3-1Q9BYR8 98 aa3.07□□□□□ -1.92
SCN1A-204ENST00000423058 SMG1Q96Q15 3661 aaKnown RBP3.07□□□□□ -1.92
SCN1A-204ENST00000423058 RELNP78509 3460 aa3.06□□□□□ -1.92
SCN1A-204ENST00000423058 FBN3Q75N90 2809 aa3.06□□□□□ -1.92
SCN1A-204ENST00000423058 CSMD1Q96PZ7 3565 aa3.05□□□□□ -1.92
SCN1A-204ENST00000423058 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
SCN1A-204ENST00000423058 KRTAP10-6P60371 365 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-204ENST00000423058 TRRAPQ9Y4A5 3859 aa3.02□□□□□ -1.93
SCN1A-204ENST00000423058 KRTAP19-4Q3LI73 84 aa3.01□□□□□ -1.93
SCN1A-204ENST00000423058 KRTAP8-1Q8IUC2 63 aa3□□□□□ -1.93
SCN1A-204ENST00000423058 ALMS1Q8TCU4 4167 aa2.98□□□□□ -1.93
SCN1A-204ENST00000423058 FBN1P35555 2871 aaKnown RBP2.98□□□□□ -1.93
SCN1A-204ENST00000423058 VPS13CQ709C8 3753 aa2.98□□□□□ -1.93
SCN1A-204ENST00000423058 MT1HL1P0DM35 61 aa2.97□□□□□ -1.93
SCN1A-204ENST00000423058 AKAP9Q99996 3911 aa2.94□□□□□ -1.94
SCN1A-204ENST00000423058 KRTAP10-5P60370 271 aa2.94□□□□□ -1.94
SCN1A-204ENST00000423058 MUC3AQ02505 3323 aa2.93□□□□□ -1.94
SCN1A-204ENST00000423058 LCE3AQ5TA76 89 aa2.92□□□□□ -1.94
SCN1A-204ENST00000423058 KRTAP3-3Q9BYR6 98 aa2.89□□□□□ -1.95
SCN1A-204ENST00000423058 KRTAP3-2Q9BYR7 98 aa2.88□□□□□ -1.95
SCN1A-204ENST00000423058 LORP23490 312 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-204ENST00000423058 BSNQ9UPA5 3926 aa2.87□□□□□ -1.95
SCN1A-204ENST00000423058 OTOGQ6ZRI0 2925 aa2.86□□□□□ -1.95
SCN1A-204ENST00000423058 DNAH1Q9P2D7 4330 aa2.86□□□□□ -1.95
SCN1A-204ENST00000423058 CSMD3Q7Z407 3707 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms