RNA–Protein interactions for RNA: ENST00000421085.6

CLCN4-203, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 5 BASIC

Gene CLCN4, Length 6,534 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-203ENST00000421085 VCANP13611 3396 aa6.56□□□□□ -1.36
CLCN4-203ENST00000421085 LRBAP50851 2863 aa6.55□□□□□ -1.36
CLCN4-203ENST00000421085 SZT2Q5T011 3432 aa6.53□□□□□ -1.36
CLCN4-203ENST00000421085 ITPR2Q14571 2701 aa6.53□□□□□ -1.36
CLCN4-203ENST00000421085 KRTAP10-8P60410 259 aa6.53□□□□□ -1.36
CLCN4-203ENST00000421085 REV3LO60673 3130 aa6.52□□□□□ -1.37
CLCN4-203ENST00000421085 IGSF10Q6WRI0 2623 aa6.52□□□□□ -1.37
CLCN4-203ENST00000421085 LAMA1P25391 3075 aa6.51□□□□□ -1.37
CLCN4-203ENST00000421085 TACC2O95359 2948 aa6.5□□□□□ -1.37
CLCN4-203ENST00000421085 UTP20O75691 2785 aaKnown RBP6.5□□□□□ -1.37
CLCN4-203ENST00000421085 KRTAP1-4P0C5Y4 121 aa6.5□□□□□ -1.37
CLCN4-203ENST00000421085 ADGRG4Q8IZF6 3080 aa6.5□□□□□ -1.37
CLCN4-203ENST00000421085 HIVEP1P15822 2718 aa6.5□□□□□ -1.37
CLCN4-203ENST00000421085 COL6A3P12111 3177 aa6.49□□□□□ -1.37
CLCN4-203ENST00000421085 ATMQ13315 3056 aa6.48□□□□□ -1.37
CLCN4-203ENST00000421085 XP32Q5T750 250 aa6.46□□□□□ -1.37
CLCN4-203ENST00000421085 CFAP47Q6ZTR5 3102 aa6.43□□□□□ -1.38
CLCN4-203ENST00000421085 BOD1L1Q8NFC6 3051 aa6.43□□□□□ -1.38
CLCN4-203ENST00000421085 COL12A1Q99715 3063 aa6.4□□□□□ -1.39
CLCN4-203ENST00000421085 FRYLO94915 3013 aa6.39□□□□□ -1.39
CLCN4-203ENST00000421085 A0A1B0GVY2 172 aa6.39□□□□□ -1.39
CLCN4-203ENST00000421085 SPTBN5Q9NRC6 3674 aaKnown RBP6.39□□□□□ -1.39
CLCN4-203ENST00000421085 ZZEF1O43149 2961 aa6.38□□□□□ -1.39
CLCN4-203ENST00000421085 KMT2BQ9UMN6 2715 aaPredicted RBP6.38□□□□□ -1.39
CLCN4-203ENST00000421085 TNRC18O15417 2968 aaPredicted RBP6.34□□□□□ -1.39
CLCN4-203ENST00000421085 CELSR2Q9HCU4 2923 aa6.33□□□□□ -1.4
CLCN4-203ENST00000421085 KRTAP13-3Q3SY46 172 aa6.32□□□□□ -1.4
CLCN4-203ENST00000421085 FLNCQ14315 2725 aa6.29□□□□□ -1.4
CLCN4-203ENST00000421085 CRYBG3Q68DQ2 2970 aa6.28□□□□□ -1.4
CLCN4-203ENST00000421085 EYSQ5T1H1 3165 aa6.27□□□□□ -1.41
CLCN4-203ENST00000421085 NIPBLQ6KC79 2804 aaeCLIP6.26□□□□□ -1.41
CLCN4-203ENST00000421085 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
CLCN4-203ENST00000421085 DCHS2Q6V1P9 2916 aa6.23□□□□□ -1.41
CLCN4-203ENST00000421085 TPRXLQ17RH7 258 aa6.23□□□□□ -1.41
CLCN4-203ENST00000421085 SPEGQ15772 3267 aa6.21□□□□□ -1.42
CLCN4-203ENST00000421085 TGP01266 2768 aa6.18□□□□□ -1.42
CLCN4-203ENST00000421085 KRTAP10-10P60014 251 aa6.17□□□□□ -1.42
CLCN4-203ENST00000421085 ZANQ9Y493 2812 aa6.14□□□□□ -1.43
CLCN4-203ENST00000421085 USP34Q70CQ2 3546 aa6.13□□□□□ -1.43
CLCN4-203ENST00000421085 TENM4Q6N022 2769 aa6.12□□□□□ -1.43
CLCN4-203ENST00000421085 DMXL1Q9Y485 3027 aa6.12□□□□□ -1.43
CLCN4-203ENST00000421085 KRTAP12-1P59990 96 aa6.11□□□□□ -1.43
CLCN4-203ENST00000421085 PRO2289Q9P1D8 64 aa6.11□□□□□ -1.43
CLCN4-203ENST00000421085 HRNRQ86YZ3 2850 aaPredicted RBP6.1□□□□□ -1.43
CLCN4-203ENST00000421085 FBN2P35556 2912 aa6.09□□□□□ -1.43
CLCN4-203ENST00000421085 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.43
CLCN4-203ENST00000421085 KRTAP21-3Q3LHN1 58 aa6.07□□□□□ -1.44
CLCN4-203ENST00000421085 MYO15AQ9UKN7 3530 aa6.06□□□□□ -1.44
CLCN4-203ENST00000421085 NF1P21359 2839 aa6.06□□□□□ -1.44
CLCN4-203ENST00000421085 KRTAP3-1Q9BYR8 98 aa6.02□□□□□ -1.45
CLCN4-203ENST00000421085 CELSR1Q9NYQ6 3014 aa6□□□□□ -1.45
CLCN4-203ENST00000421085 LOC400499M0QZD8 3231 aa5.99□□□□□ -1.45
CLCN4-203ENST00000421085 TENM1Q9UKZ4 2725 aa5.97□□□□□ -1.45
CLCN4-203ENST00000421085 TENM3Q9P273 2699 aa5.96□□□□□ -1.45
CLCN4-203ENST00000421085 WDFY3Q8IZQ1 3526 aa5.9□□□□□ -1.47
CLCN4-203ENST00000421085 KRTAP10-6P60371 365 aaPredicted RBP5.89□□□□□ -1.47
CLCN4-203ENST00000421085 DCHS1Q96JQ0 3298 aa5.89□□□□□ -1.47
CLCN4-203ENST00000421085 TENM2Q9NT68 2774 aa5.87□□□□□ -1.47
CLCN4-203ENST00000421085 DMDP11532 3685 aa5.86□□□□□ -1.47
CLCN4-203ENST00000421085 KRTAP15-1Q3LI76 137 aa5.85□□□□□ -1.47
CLCN4-203ENST00000421085 MUC3AQ02505 3323 aa5.84□□□□□ -1.47
CLCN4-203ENST00000421085 PDZD2O15018 2839 aa5.84□□□□□ -1.48
CLCN4-203ENST00000421085 MXRA5Q9NR99 2828 aa5.83□□□□□ -1.48
CLCN4-203ENST00000421085 CSMD1Q96PZ7 3565 aa5.79□□□□□ -1.48
CLCN4-203ENST00000421085 ASPMQ8IZT6 3477 aa5.79□□□□□ -1.48
CLCN4-203ENST00000421085 RELNP78509 3460 aa5.77□□□□□ -1.49
CLCN4-203ENST00000421085 ZFHX4Q86UP3 3567 aa5.77□□□□□ -1.49
CLCN4-203ENST00000421085 INE1O15225 51 aa5.72□□□□□ -1.49
CLCN4-203ENST00000421085 LAMA5O15230 3695 aa5.72□□□□□ -1.49
CLCN4-203ENST00000421085 PKD1L1Q8TDX9 2849 aa5.71□□□□□ -1.5
CLCN4-203ENST00000421085 VWFP04275 2813 aa5.69□□□□□ -1.5
CLCN4-203ENST00000421085 KRTAP3-2Q9BYR7 98 aa5.65□□□□□ -1.5
CLCN4-203ENST00000421085 KRTAP3-3Q9BYR6 98 aa5.62□□□□□ -1.51
CLCN4-203ENST00000421085 SMG1Q96Q15 3661 aaKnown RBP5.58□□□□□ -1.52
CLCN4-203ENST00000421085 NBPF19A0A087WUL8 3843 aa5.53□□□□□ -1.52
CLCN4-203ENST00000421085 FBN3Q75N90 2809 aa5.52□□□□□ -1.53
CLCN4-203ENST00000421085 MEGF8Q7Z7M0 2845 aa5.52□□□□□ -1.53
CLCN4-203ENST00000421085 SVEP1Q4LDE5 3571 aa5.48□□□□□ -1.53
CLCN4-203ENST00000421085 KRTAP10-12P60413 245 aa5.47□□□□□ -1.53
CLCN4-203ENST00000421085 SRRM2Q9UQ35 2752 aaKnown RBP5.46□□□□□ -1.54
CLCN4-203ENST00000421085 FBN1P35555 2871 aaKnown RBP5.46□□□□□ -1.54
CLCN4-203ENST00000421085 BSNQ9UPA5 3926 aa5.46□□□□□ -1.54
CLCN4-203ENST00000421085 CUBNO60494 3623 aa5.43□□□□□ -1.54
CLCN4-203ENST00000421085 CRCT1Q9UGL9 99 aa5.41□□□□□ -1.54
CLCN4-203ENST00000421085 SPENQ96T58 3664 aaKnown RBP5.41□□□□□ -1.54
CLCN4-203ENST00000421085 ANK3Q12955 4377 aaKnown RBP5.38□□□□□ -1.55
CLCN4-203ENST00000421085 MT1HL1P0DM35 61 aa5.38□□□□□ -1.55
CLCN4-203ENST00000421085 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
CLCN4-203ENST00000421085 LCE3AQ5TA76 89 aa5.35□□□□□ -1.55
CLCN4-203ENST00000421085 KRTAP23-1A1A580 65 aa5.34□□□□□ -1.55
CLCN4-203ENST00000421085 COL7A1Q02388 2944 aa5.34□□□□□ -1.55
CLCN4-203ENST00000421085 ZFHX3Q15911 3703 aa5.29□□□□□ -1.56
CLCN4-203ENST00000421085 LORP23490 312 aaPredicted RBP5.28□□□□□ -1.56
CLCN4-203ENST00000421085 OTOGQ6ZRI0 2925 aa5.28□□□□□ -1.56
CLCN4-203ENST00000421085 TRRAPQ9Y4A5 3859 aa5.26□□□□□ -1.57
CLCN4-203ENST00000421085 CSMD2Q7Z408 3487 aa5.25□□□□□ -1.57
CLCN4-203ENST00000421085 KRTAP10-4P60372 401 aaPredicted RBP5.23□□□□□ -1.57
CLCN4-203ENST00000421085 HUWE1Q7Z6Z7 4374 aaKnown RBP5.19□□□□□ -1.58
CLCN4-203ENST00000421085 KRTAP10-5P60370 271 aa5.11□□□□□ -1.59
CLCN4-203ENST00000421085 KRTAP4-5Q9BYR2 181 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms