RNA–Protein interactions for RNA: ENST00000411553.3

HCG11-201, Transcript of HLA complex group 11, humanhuman

BASIC

Gene HCG11, Length 5,696 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG11-201ENST00000411553 VPS13AQ96RL7 3174 aa9.63□□□□□ -0.87
HCG11-201ENST00000411553 REV3LO60673 3130 aa9.62□□□□□ -0.87
HCG11-201ENST00000411553 KRTAP10-10P60014 251 aa9.62□□□□□ -0.87
HCG11-201ENST00000411553 XIRP2A4UGR9 3374 aa9.62□□□□□ -0.87
HCG11-201ENST00000411553 FLNCQ14315 2725 aa9.61□□□□□ -0.87
HCG11-201ENST00000411553 KALRNO60229 2985 aa9.61□□□□□ -0.87
HCG11-201ENST00000411553 CRYBG3Q68DQ2 2970 aa9.56□□□□□ -0.88
HCG11-201ENST00000411553 DMXL2Q8TDJ6 3036 aa9.56□□□□□ -0.88
HCG11-201ENST00000411553 FREM2Q5SZK8 3169 aa9.55□□□□□ -0.88
HCG11-201ENST00000411553 ATMQ13315 3056 aa9.55□□□□□ -0.88
HCG11-201ENST00000411553 PRO2289Q9P1D8 64 aa9.54□□□□□ -0.88
HCG11-201ENST00000411553 H0YAA0 97 aa9.52□□□□□ -0.88
HCG11-201ENST00000411553 ASH1LQ9NR48 2969 aaKnown RBP9.51□□□□□ -0.89
HCG11-201ENST00000411553 COL12A1Q99715 3063 aa9.51□□□□□ -0.89
HCG11-201ENST00000411553 LRBAP50851 2863 aa9.5□□□□□ -0.89
HCG11-201ENST00000411553 NIPBLQ6KC79 2804 aaeCLIP9.5□□□□□ -0.89
HCG11-201ENST00000411553 UNC80Q8N2C7 3258 aa9.5□□□□□ -0.89
HCG11-201ENST00000411553 KRTAP13-3Q3SY46 172 aa9.48□□□□□ -0.89
HCG11-201ENST00000411553 P0C880 135 aa9.44□□□□□ -0.9
HCG11-201ENST00000411553 CELSR3Q9NYQ7 3312 aa9.42□□□□□ -0.9
HCG11-201ENST00000411553 CELSR2Q9HCU4 2923 aa9.38□□□□□ -0.91
HCG11-201ENST00000411553 FRYLO94915 3013 aa9.37□□□□□ -0.91
HCG11-201ENST00000411553 LAMA1P25391 3075 aa9.36□□□□□ -0.91
HCG11-201ENST00000411553 CDH23Q9H251 3354 aa9.29□□□□□ -0.92
HCG11-201ENST00000411553 ADGRG4Q8IZF6 3080 aa9.29□□□□□ -0.92
HCG11-201ENST00000411553 DCHS2Q6V1P9 2916 aa9.27□□□□□ -0.93
HCG11-201ENST00000411553 ZZEF1O43149 2961 aa9.22□□□□□ -0.93
HCG11-201ENST00000411553 TENM3Q9P273 2699 aa9.21□□□□□ -0.94
HCG11-201ENST00000411553 TENM1Q9UKZ4 2725 aa9.2□□□□□ -0.94
HCG11-201ENST00000411553 BOD1L1Q8NFC6 3051 aa9.2□□□□□ -0.94
HCG11-201ENST00000411553 EYSQ5T1H1 3165 aa9.19□□□□□ -0.94
HCG11-201ENST00000411553 NBEAQ8NFP9 2946 aa9.16□□□□□ -0.94
HCG11-201ENST00000411553 COL6A3P12111 3177 aa9.14□□□□□ -0.95
HCG11-201ENST00000411553 TENM2Q9NT68 2774 aa9.12□□□□□ -0.95
HCG11-201ENST00000411553 CFAP47Q6ZTR5 3102 aa9.12□□□□□ -0.95
HCG11-201ENST00000411553 VCANP13611 3396 aa9.09□□□□□ -0.95
HCG11-201ENST00000411553 DNAH14Q0VDD8 3507 aa9.08□□□□□ -0.96
HCG11-201ENST00000411553 SZT2Q5T011 3432 aa9.07□□□□□ -0.96
HCG11-201ENST00000411553 ZANQ9Y493 2812 aa9.05□□□□□ -0.96
HCG11-201ENST00000411553 NF1P21359 2839 aa9.03□□□□□ -0.96
HCG11-201ENST00000411553 KRTAP12-2P59991 146 aa9□□□□□ -0.97
HCG11-201ENST00000411553 TGP01266 2768 aa8.97□□□□□ -0.97
HCG11-201ENST00000411553 KRTAP13-4Q3LI77 160 aa8.93□□□□□ -0.98
HCG11-201ENST00000411553 HRNRQ86YZ3 2850 aaPredicted RBP8.89□□□□□ -0.99
HCG11-201ENST00000411553 TNRC18O15417 2968 aaPredicted RBP8.86□□□□□ -0.99
HCG11-201ENST00000411553 FBN2P35556 2912 aa8.85□□□□□ -0.99
HCG11-201ENST00000411553 SPEGQ15772 3267 aa8.83□□□□□ -1
HCG11-201ENST00000411553 USP34Q70CQ2 3546 aa8.83□□□□□ -1
HCG11-201ENST00000411553 KRTAP12-1P59990 96 aa8.83□□□□□ -1
HCG11-201ENST00000411553 CELSR1Q9NYQ6 3014 aa8.81□□□□□ -1
HCG11-201ENST00000411553 PKD1L1Q8TDX9 2849 aa8.75□□□□□ -1.01
HCG11-201ENST00000411553 SPTBN5Q9NRC6 3674 aaKnown RBP8.73□□□□□ -1.01
HCG11-201ENST00000411553 KRTAP3-1Q9BYR8 98 aa8.71□□□□□ -1.02
HCG11-201ENST00000411553 MXRA5Q9NR99 2828 aa8.7□□□□□ -1.02
HCG11-201ENST00000411553 DMXL1Q9Y485 3027 aa8.7□□□□□ -1.02
HCG11-201ENST00000411553 PDZD2O15018 2839 aa8.69□□□□□ -1.02
HCG11-201ENST00000411553 KRTAP15-1Q3LI76 137 aa8.68□□□□□ -1.02
HCG11-201ENST00000411553 VWFP04275 2813 aa8.64□□□□□ -1.03
HCG11-201ENST00000411553 MYO15AQ9UKN7 3530 aa8.5□□□□□ -1.05
HCG11-201ENST00000411553 KRTAP10-6P60371 365 aaPredicted RBP8.48□□□□□ -1.05
HCG11-201ENST00000411553 LOC400499M0QZD8 3231 aa8.42□□□□□ -1.06
HCG11-201ENST00000411553 MT1HL1P0DM35 61 aa8.36□□□□□ -1.07
HCG11-201ENST00000411553 WDFY3Q8IZQ1 3526 aa8.27□□□□□ -1.08
HCG11-201ENST00000411553 KRTAP10-12P60413 245 aa8.26□□□□□ -1.09
HCG11-201ENST00000411553 DCHS1Q96JQ0 3298 aa8.24□□□□□ -1.09
HCG11-201ENST00000411553 SRRM2Q9UQ35 2752 aaKnown RBP8.24□□□□□ -1.09
HCG11-201ENST00000411553 CRCT1Q9UGL9 99 aa8.22□□□□□ -1.09
HCG11-201ENST00000411553 NBPF19A0A087WUL8 3843 aa8.17□□□□□ -1.1
HCG11-201ENST00000411553 RELNP78509 3460 aa8.17□□□□□ -1.1
HCG11-201ENST00000411553 KRTAP3-2Q9BYR7 98 aa8.14□□□□□ -1.11
HCG11-201ENST00000411553 FBN1P35555 2871 aaKnown RBP8.13□□□□□ -1.11
HCG11-201ENST00000411553 KRTAP3-3Q9BYR6 98 aa8.13□□□□□ -1.11
HCG11-201ENST00000411553 FBN3Q75N90 2809 aa8.13□□□□□ -1.11
HCG11-201ENST00000411553 MUC3AQ02505 3323 aa8.1□□□□□ -1.11
HCG11-201ENST00000411553 INE1O15225 51 aa8.09□□□□□ -1.11
HCG11-201ENST00000411553 OTOGQ6ZRI0 2925 aa8.08□□□□□ -1.12
HCG11-201ENST00000411553 KRTAP4-5Q9BYR2 181 aa8.08□□□□□ -1.12
HCG11-201ENST00000411553 MEGF8Q7Z7M0 2845 aa8.08□□□□□ -1.12
HCG11-201ENST00000411553 ZFHX4Q86UP3 3567 aa8.06□□□□□ -1.12
HCG11-201ENST00000411553 ANK3Q12955 4377 aaKnown RBP8.01□□□□□ -1.13
HCG11-201ENST00000411553 KRTAP10-4P60372 401 aaPredicted RBP8.01□□□□□ -1.13
HCG11-201ENST00000411553 KRTAP12-3P60328 96 aa8□□□□□ -1.13
HCG11-201ENST00000411553 ASPMQ8IZT6 3477 aa7.98□□□□□ -1.13
HCG11-201ENST00000411553 ZFHX3Q15911 3703 aa7.95□□□□□ -1.14
HCG11-201ENST00000411553 COL7A1Q02388 2944 aa7.95□□□□□ -1.14
HCG11-201ENST00000411553 LAMA5O15230 3695 aa7.89□□□□□ -1.15
HCG11-201ENST00000411553 DMDP11532 3685 aa7.88□□□□□ -1.15
HCG11-201ENST00000411553 LCE3AQ5TA76 89 aa7.87□□□□□ -1.15
HCG11-201ENST00000411553 KRTAP23-1A1A580 65 aa7.85□□□□□ -1.15
HCG11-201ENST00000411553 CSMD1Q96PZ7 3565 aa7.76□□□□□ -1.17
HCG11-201ENST00000411553 SMG1Q96Q15 3661 aaKnown RBP7.72□□□□□ -1.17
HCG11-201ENST00000411553 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.18
HCG11-201ENST00000411553 KRTAP8-1Q8IUC2 63 aa7.7□□□□□ -1.18
HCG11-201ENST00000411553 HUWE1Q7Z6Z7 4374 aaKnown RBP7.68□□□□□ -1.18
HCG11-201ENST00000411553 ALMS1Q8TCU4 4167 aa7.67□□□□□ -1.18
HCG11-201ENST00000411553 TRRAPQ9Y4A5 3859 aa7.63□□□□□ -1.19
HCG11-201ENST00000411553 KRTAP10-5P60370 271 aa7.58□□□□□ -1.2
HCG11-201ENST00000411553 SVEP1Q4LDE5 3571 aa7.54□□□□□ -1.2
HCG11-201ENST00000411553 CSMD2Q7Z408 3487 aa7.51□□□□□ -1.21
HCG11-201ENST00000411553 CUBNO60494 3623 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms