RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 ITPR1Q14643 2758 aa5.53□□□□□ -1.52
COL4A6-203ENST00000394872 COL6A3P12111 3177 aa5.52□□□□□ -1.53
COL4A6-203ENST00000394872 KALRNO60229 2985 aa5.5□□□□□ -1.53
COL4A6-203ENST00000394872 TPRXLQ17RH7 258 aa5.49□□□□□ -1.53
COL4A6-203ENST00000394872 USP34Q70CQ2 3546 aa5.49□□□□□ -1.53
COL4A6-203ENST00000394872 CRYBG3Q68DQ2 2970 aa5.49□□□□□ -1.53
COL4A6-203ENST00000394872 FREM2Q5SZK8 3169 aa5.49□□□□□ -1.53
COL4A6-203ENST00000394872 APCP25054 2843 aa5.48□□□□□ -1.53
COL4A6-203ENST00000394872 KRTAP10-10P60014 251 aa5.48□□□□□ -1.53
COL4A6-203ENST00000394872 UTP20O75691 2785 aaKnown RBP5.47□□□□□ -1.53
COL4A6-203ENST00000394872 PP632Q6XCG6 107 aa5.46□□□□□ -1.54
COL4A6-203ENST00000394872 VCANP13611 3396 aa5.45□□□□□ -1.54
COL4A6-203ENST00000394872 LRBAP50851 2863 aa5.45□□□□□ -1.54
COL4A6-203ENST00000394872 TACC2O95359 2948 aa5.44□□□□□ -1.54
COL4A6-203ENST00000394872 ATMQ13315 3056 aa5.43□□□□□ -1.54
COL4A6-203ENST00000394872 HIVEP1P15822 2718 aa5.43□□□□□ -1.54
COL4A6-203ENST00000394872 SPTBN5Q9NRC6 3674 aaKnown RBP5.43□□□□□ -1.54
COL4A6-203ENST00000394872 COL12A1Q99715 3063 aa5.42□□□□□ -1.54
COL4A6-203ENST00000394872 LAMA1P25391 3075 aa5.41□□□□□ -1.54
COL4A6-203ENST00000394872 PRO2289Q9P1D8 64 aa5.4□□□□□ -1.55
COL4A6-203ENST00000394872 DMXL2Q8TDJ6 3036 aa5.39□□□□□ -1.55
COL4A6-203ENST00000394872 KRTAP13-3Q3SY46 172 aa5.38□□□□□ -1.55
COL4A6-203ENST00000394872 FRYLO94915 3013 aa5.38□□□□□ -1.55
COL4A6-203ENST00000394872 H0YAA0 97 aa5.37□□□□□ -1.55
COL4A6-203ENST00000394872 SPEGQ15772 3267 aa5.35□□□□□ -1.55
COL4A6-203ENST00000394872 TENM4Q6N022 2769 aa5.35□□□□□ -1.55
COL4A6-203ENST00000394872 MYO15AQ9UKN7 3530 aa5.35□□□□□ -1.55
COL4A6-203ENST00000394872 BOD1L1Q8NFC6 3051 aa5.34□□□□□ -1.55
COL4A6-203ENST00000394872 FLNCQ14315 2725 aa5.34□□□□□ -1.55
COL4A6-203ENST00000394872 CFAP47Q6ZTR5 3102 aa5.34□□□□□ -1.56
COL4A6-203ENST00000394872 ASH1LQ9NR48 2969 aaKnown RBP5.34□□□□□ -1.56
COL4A6-203ENST00000394872 P0C880 135 aa5.33□□□□□ -1.56
COL4A6-203ENST00000394872 ADGRG4Q8IZF6 3080 aa5.33□□□□□ -1.56
COL4A6-203ENST00000394872 EYSQ5T1H1 3165 aa5.32□□□□□ -1.56
COL4A6-203ENST00000394872 DCHS1Q96JQ0 3298 aa5.29□□□□□ -1.56
COL4A6-203ENST00000394872 WDFY3Q8IZQ1 3526 aa5.25□□□□□ -1.57
COL4A6-203ENST00000394872 CELSR2Q9HCU4 2923 aa5.25□□□□□ -1.57
COL4A6-203ENST00000394872 ZZEF1O43149 2961 aa5.23□□□□□ -1.57
COL4A6-203ENST00000394872 NBEAQ8NFP9 2946 aa5.23□□□□□ -1.57
COL4A6-203ENST00000394872 NIPBLQ6KC79 2804 aaeCLIP5.22□□□□□ -1.57
COL4A6-203ENST00000394872 ASPMQ8IZT6 3477 aa5.21□□□□□ -1.58
COL4A6-203ENST00000394872 DCHS2Q6V1P9 2916 aa5.2□□□□□ -1.58
COL4A6-203ENST00000394872 TNRC18O15417 2968 aaPredicted RBP5.19□□□□□ -1.58
COL4A6-203ENST00000394872 TENM2Q9NT68 2774 aa5.13□□□□□ -1.59
COL4A6-203ENST00000394872 TENM1Q9UKZ4 2725 aa5.13□□□□□ -1.59
COL4A6-203ENST00000394872 DMXL1Q9Y485 3027 aa5.11□□□□□ -1.59
COL4A6-203ENST00000394872 HRNRQ86YZ3 2850 aaPredicted RBP5.1□□□□□ -1.59
COL4A6-203ENST00000394872 KRTAP12-2P59991 146 aa5.09□□□□□ -1.59
COL4A6-203ENST00000394872 ZANQ9Y493 2812 aa5.08□□□□□ -1.6
COL4A6-203ENST00000394872 CSMD1Q96PZ7 3565 aa5.08□□□□□ -1.6
COL4A6-203ENST00000394872 NF1P21359 2839 aa5.07□□□□□ -1.6
COL4A6-203ENST00000394872 CELSR1Q9NYQ6 3014 aa5.05□□□□□ -1.6
COL4A6-203ENST00000394872 ZFHX4Q86UP3 3567 aa5.04□□□□□ -1.6
COL4A6-203ENST00000394872 LAMA5O15230 3695 aa5.03□□□□□ -1.6
COL4A6-203ENST00000394872 KRTAP13-4Q3LI77 160 aa5.03□□□□□ -1.6
COL4A6-203ENST00000394872 LOC400499M0QZD8 3231 aa5.02□□□□□ -1.61
COL4A6-203ENST00000394872 FBN2P35556 2912 aa5.02□□□□□ -1.61
COL4A6-203ENST00000394872 TENM3Q9P273 2699 aa5.01□□□□□ -1.61
COL4A6-203ENST00000394872 TGP01266 2768 aa4.99□□□□□ -1.61
COL4A6-203ENST00000394872 KRTAP12-1P59990 96 aa4.97□□□□□ -1.61
COL4A6-203ENST00000394872 NBPF19A0A087WUL8 3843 aa4.94□□□□□ -1.62
COL4A6-203ENST00000394872 KRTAP3-1Q9BYR8 98 aa4.91□□□□□ -1.62
COL4A6-203ENST00000394872 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.62
COL4A6-203ENST00000394872 SMG1Q96Q15 3661 aaKnown RBP4.89□□□□□ -1.63
COL4A6-203ENST00000394872 PKD1L1Q8TDX9 2849 aa4.87□□□□□ -1.63
COL4A6-203ENST00000394872 MXRA5Q9NR99 2828 aa4.87□□□□□ -1.63
COL4A6-203ENST00000394872 DMDP11532 3685 aa4.87□□□□□ -1.63
COL4A6-203ENST00000394872 RELNP78509 3460 aa4.85□□□□□ -1.63
COL4A6-203ENST00000394872 VWFP04275 2813 aa4.82□□□□□ -1.64
COL4A6-203ENST00000394872 PDZD2O15018 2839 aa4.79□□□□□ -1.64
COL4A6-203ENST00000394872 ANK3Q12955 4377 aaKnown RBP4.79□□□□□ -1.64
COL4A6-203ENST00000394872 SPENQ96T58 3664 aaKnown RBP4.78□□□□□ -1.64
COL4A6-203ENST00000394872 MT1HL1P0DM35 61 aa4.77□□□□□ -1.65
COL4A6-203ENST00000394872 KRTAP10-6P60371 365 aaPredicted RBP4.76□□□□□ -1.65
COL4A6-203ENST00000394872 SVEP1Q4LDE5 3571 aa4.76□□□□□ -1.65
COL4A6-203ENST00000394872 INE1O15225 51 aa4.72□□□□□ -1.65
COL4A6-203ENST00000394872 CRCT1Q9UGL9 99 aa4.7□□□□□ -1.66
COL4A6-203ENST00000394872 ZFHX3Q15911 3703 aa4.7□□□□□ -1.66
COL4A6-203ENST00000394872 KRTAP10-12P60413 245 aa4.68□□□□□ -1.66
COL4A6-203ENST00000394872 KRTAP4-5Q9BYR2 181 aa4.67□□□□□ -1.66
COL4A6-203ENST00000394872 BSNQ9UPA5 3926 aa4.66□□□□□ -1.66
COL4A6-203ENST00000394872 OTOGQ6ZRI0 2925 aa4.62□□□□□ -1.67
COL4A6-203ENST00000394872 FBN1P35555 2871 aaKnown RBP4.59□□□□□ -1.67
COL4A6-203ENST00000394872 KRTAP3-3Q9BYR6 98 aa4.59□□□□□ -1.67
COL4A6-203ENST00000394872 HUWE1Q7Z6Z7 4374 aaKnown RBP4.59□□□□□ -1.67
COL4A6-203ENST00000394872 ALMS1Q8TCU4 4167 aa4.58□□□□□ -1.68
COL4A6-203ENST00000394872 KRTAP3-2Q9BYR7 98 aa4.58□□□□□ -1.68
COL4A6-203ENST00000394872 KRTAP10-4P60372 401 aaPredicted RBP4.57□□□□□ -1.68
COL4A6-203ENST00000394872 FBN3Q75N90 2809 aa4.55□□□□□ -1.68
COL4A6-203ENST00000394872 CUBNO60494 3623 aa4.55□□□□□ -1.68
COL4A6-203ENST00000394872 MEGF8Q7Z7M0 2845 aa4.54□□□□□ -1.68
COL4A6-203ENST00000394872 VPS13CQ709C8 3753 aa4.53□□□□□ -1.68
COL4A6-203ENST00000394872 KRTAP12-3P60328 96 aa4.51□□□□□ -1.69
COL4A6-203ENST00000394872 AKAP9Q99996 3911 aa4.5□□□□□ -1.69
COL4A6-203ENST00000394872 TRRAPQ9Y4A5 3859 aa4.49□□□□□ -1.69
COL4A6-203ENST00000394872 MUC3AQ02505 3323 aa4.49□□□□□ -1.69
COL4A6-203ENST00000394872 SRRM2Q9UQ35 2752 aaKnown RBP4.47□□□□□ -1.69
COL4A6-203ENST00000394872 CSMD2Q7Z408 3487 aa4.47□□□□□ -1.69
COL4A6-203ENST00000394872 LCE3AQ5TA76 89 aa4.46□□□□□ -1.69
COL4A6-203ENST00000394872 COL7A1Q02388 2944 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms