RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 DCAF8L2P0C7V8 631 aa18.24■□□□□ 0.51
COL4A6-203ENST00000394872 SUPT5HO00267 1087 aaKnown RBP17.08■□□□□ 0.32
COL4A6-203ENST00000394872 NISCHQ9Y2I1 1504 aa16.83■□□□□ 0.28
COL4A6-203ENST00000394872 SHROOM4Q9ULL8 1493 aa16.79■□□□□ 0.28
COL4A6-203ENST00000394872 EHMT2Q96KQ7 1210 aa16.73■□□□□ 0.27
COL4A6-203ENST00000394872 APLP2Q06481 763 aa16.43■□□□□ 0.22
COL4A6-203ENST00000394872 PELP1Q8IZL8 1130 aaKnown RBP16.33■□□□□ 0.21
COL4A6-203ENST00000394872 FAM9AQ8IZU1 332 aaPredicted RBP16.33■□□□□ 0.2
COL4A6-203ENST00000394872 TTBK1Q5TCY1 1321 aaPredicted RBP16.14■□□□□ 0.17
COL4A6-203ENST00000394872 RANGAP1P46060 587 aaPredicted RBP16.04■□□□□ 0.16
COL4A6-203ENST00000394872 ATP1B4Q9UN42 357 aaPredicted RBP15.97■□□□□ 0.15
COL4A6-203ENST00000394872 PCGF6Q9BYE7 350 aa15.87■□□□□ 0.13
COL4A6-203ENST00000394872 TRIM41Q8WV44 630 aa15.81■□□□□ 0.12
COL4A6-203ENST00000394872 UBTFP17480 764 aaKnown RBP15.73■□□□□ 0.11
COL4A6-203ENST00000394872 ERICH6Q7L0X2 663 aa15.71■□□□□ 0.11
COL4A6-203ENST00000394872 CCER1Q8TC90 406 aaPredicted RBP15.7■□□□□ 0.1
COL4A6-203ENST00000394872 CENPBP07199 599 aaPredicted RBP15.63■□□□□ 0.09
COL4A6-203ENST00000394872 ZEB1P37275 1124 aaPredicted RBP15.6■□□□□ 0.09
COL4A6-203ENST00000394872 MYT1LQ9UL68 1186 aa15.48■□□□□ 0.07
COL4A6-203ENST00000394872 MYT1Q01538 1121 aa15.44■□□□□ 0.06
COL4A6-203ENST00000394872 NEFLP07196 543 aa15.43■□□□□ 0.06
COL4A6-203ENST00000394872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.4■□□□□ 0.06
COL4A6-203ENST00000394872 HNRNPUL2Q1KMD3 747 aaKnown RBP15.4■□□□□ 0.06
COL4A6-203ENST00000394872 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
COL4A6-203ENST00000394872 YTHDC1Q96MU7 727 aaKnown RBP15.38■□□□□ 0.05
COL4A6-203ENST00000394872 ITGAEP38570 1179 aa15.29■□□□□ 0.04
COL4A6-203ENST00000394872 POLR3GLQ9BT43 218 aa15.28■□□□□ 0.04
COL4A6-203ENST00000394872 CHIC1Q5VXU3 224 aa15.21■□□□□ 0.02
COL4A6-203ENST00000394872 TRIM26Q12899 539 aaPredicted RBP15.11■□□□□ 0.01
COL4A6-203ENST00000394872 CNGB1Q14028 1251 aaPredicted RBP15.1■□□□□ 0.01
COL4A6-203ENST00000394872 SLC4A1APQ9BWU0 796 aaKnown RBP15.09■□□□□ 0.01
COL4A6-203ENST00000394872 DAXXQ9UER7 740 aaPredicted RBP15.08■□□□□ 0
COL4A6-203ENST00000394872 LOC105371045A0A1W2PR82 267 aa14.97□□□□□ -0.01
COL4A6-203ENST00000394872 PABPN1Q86U42 306 aaKnown RBP eCLIP14.9□□□□□ -0.02
COL4A6-203ENST00000394872 FAM50AQ14320 339 aaKnown RBP14.89□□□□□ -0.03
COL4A6-203ENST00000394872 HRCP23327 699 aa14.87□□□□□ -0.03
COL4A6-203ENST00000394872 ABCC9O60706 1549 aa14.85□□□□□ -0.03
COL4A6-203ENST00000394872 TRIM52Q96A61 297 aa14.84□□□□□ -0.03
COL4A6-203ENST00000394872 CLSPNQ9HAW4 1339 aa14.78□□□□□ -0.04
COL4A6-203ENST00000394872 FBLN2P98095 1184 aa14.78□□□□□ -0.04
COL4A6-203ENST00000394872 ZNF316A6NFI3 1004 aaPredicted RBP14.72□□□□□ -0.05
COL4A6-203ENST00000394872 NEUROD1Q13562 356 aa14.72□□□□□ -0.05
COL4A6-203ENST00000394872 ZNF326Q5BKZ1 582 aaKnown RBP14.68□□□□□ -0.06
COL4A6-203ENST00000394872 BCANQ96GW7 911 aa14.64□□□□□ -0.07
COL4A6-203ENST00000394872 DIEXFQ68CQ4 756 aaKnown RBP14.62□□□□□ -0.07
COL4A6-203ENST00000394872 SLC24A1O60721 1099 aa14.61□□□□□ -0.07
COL4A6-203ENST00000394872 RTL5Q5HYW3 569 aaPredicted RBP14.61□□□□□ -0.07
COL4A6-203ENST00000394872 ZBTB47Q9UFB7 747 aaPredicted RBP14.58□□□□□ -0.08
COL4A6-203ENST00000394872 ARID3CA6NKF2 412 aa14.55□□□□□ -0.08
COL4A6-203ENST00000394872 P3H3Q8IVL6 736 aa14.52□□□□□ -0.09
COL4A6-203ENST00000394872 ANP32CO43423 234 aa14.52□□□□□ -0.09
COL4A6-203ENST00000394872 BCL11AQ9H165 835 aa14.49□□□□□ -0.09
COL4A6-203ENST00000394872 NEFMP07197 916 aa14.48□□□□□ -0.09
COL4A6-203ENST00000394872 CANXP27824 592 aaKnown RBP14.47□□□□□ -0.09
COL4A6-203ENST00000394872 ZNF777Q9ULD5 760 aaPredicted RBP14.47□□□□□ -0.09
COL4A6-203ENST00000394872 ESF1Q9H501 851 aaKnown RBP14.43□□□□□ -0.1
COL4A6-203ENST00000394872 PLPPR3Q6T4P5 718 aa14.38□□□□□ -0.11
COL4A6-203ENST00000394872 CDK11AQ9UQ88 783 aaPredicted RBP14.36□□□□□ -0.11
COL4A6-203ENST00000394872 STAG3Q9UJ98 1225 aa14.35□□□□□ -0.11
COL4A6-203ENST00000394872 CHGAP10645 457 aaKnown RBP14.33□□□□□ -0.12
COL4A6-203ENST00000394872 NPM1P06748 294 aaKnown RBP eCLIP14.3□□□□□ -0.12
COL4A6-203ENST00000394872 CSRNP3Q8WYN3 585 aa14.3□□□□□ -0.12
COL4A6-203ENST00000394872 GTF3C3Q9Y5Q9 886 aa14.25□□□□□ -0.13
COL4A6-203ENST00000394872 SCRIBQ14160 1630 aa14.21□□□□□ -0.13
COL4A6-203ENST00000394872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.14
COL4A6-203ENST00000394872 TONSLQ96HA7 1378 aa14.15□□□□□ -0.14
COL4A6-203ENST00000394872 ANP32AP39687 249 aaKnown RBP14.13□□□□□ -0.15
COL4A6-203ENST00000394872 NPM2Q86SE8 214 aaKnown RBP14.12□□□□□ -0.15
COL4A6-203ENST00000394872 SCAF1Q9H7N4 1312 aaKnown RBP14.1□□□□□ -0.15
COL4A6-203ENST00000394872 CHIC2Q9UKJ5 165 aa14.09□□□□□ -0.15
COL4A6-203ENST00000394872 HSP90AA1P07900 732 aaKnown RBP14.06□□□□□ -0.16
COL4A6-203ENST00000394872 CHMP7Q8WUX9 453 aaPredicted RBP14.05□□□□□ -0.16
COL4A6-203ENST00000394872 SALL2Q9Y467 1007 aaPredicted RBP14.04□□□□□ -0.16
COL4A6-203ENST00000394872 FAM9BQ8IZU0 186 aa14.04□□□□□ -0.16
COL4A6-203ENST00000394872 TSPY4P0CV99 314 aa14.03□□□□□ -0.16
COL4A6-203ENST00000394872 TSPY10P0CW01 314 aa14.03□□□□□ -0.16
COL4A6-203ENST00000394872 A0A0G2JS52 829 aa14.02□□□□□ -0.17
COL4A6-203ENST00000394872 KDM2AQ9Y2K7 1162 aa14.01□□□□□ -0.17
COL4A6-203ENST00000394872 HNRNPUQ00839 825 aaKnown RBP eCLIP14□□□□□ -0.17
COL4A6-203ENST00000394872 UPF2Q9HAU5 1272 aaKnown RBP14□□□□□ -0.17
COL4A6-203ENST00000394872 ANP32BQ92688 251 aaKnown RBP13.99□□□□□ -0.17
COL4A6-203ENST00000394872 DDX10Q13206 875 aaKnown RBP13.98□□□□□ -0.17
COL4A6-203ENST00000394872 WDR43Q15061 677 aaKnown RBP eCLIP13.98□□□□□ -0.17
COL4A6-203ENST00000394872 ZBTB7CA1YPR0 619 aa13.98□□□□□ -0.17
COL4A6-203ENST00000394872 TMC1Q8TDI8 760 aa13.97□□□□□ -0.17
COL4A6-203ENST00000394872 ACIN1Q9UKV3 1341 aaKnown RBP13.97□□□□□ -0.17
COL4A6-203ENST00000394872 SENP3Q9H4L4 574 aaPredicted RBP13.97□□□□□ -0.17
COL4A6-203ENST00000394872 FKBP8Q14318 412 aa13.97□□□□□ -0.17
COL4A6-203ENST00000394872 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
COL4A6-203ENST00000394872 MTUS2Q5JR59 1369 aa13.96□□□□□ -0.17
COL4A6-203ENST00000394872 C14orf37Q86TY3 774 aa13.94□□□□□ -0.18
COL4A6-203ENST00000394872 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.93□□□□□ -0.18
COL4A6-203ENST00000394872 PPP1R15AO75807 674 aaPredicted RBP13.93□□□□□ -0.18
COL4A6-203ENST00000394872 KCNH8Q96L42 1107 aa13.93□□□□□ -0.18
COL4A6-203ENST00000394872 ARID4BQ4LE39 1312 aaPredicted RBP13.86□□□□□ -0.19
COL4A6-203ENST00000394872 ZCCHC6Q5VYS8 1495 aaKnown RBP13.85□□□□□ -0.19
COL4A6-203ENST00000394872 MYH16Q9H6N6 1097 aa13.85□□□□□ -0.19
COL4A6-203ENST00000394872 CCDC136Q96JN2 1154 aa13.85□□□□□ -0.19
COL4A6-203ENST00000394872 MRS2Q9HD23 443 aa13.85□□□□□ -0.19
COL4A6-203ENST00000394872 RRP7BPQ9NSQ0 103 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms