RNA–Protein interactions for RNA: ENST00000380494.9

COL4A3BP-203, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 2 BASIC

Gene COL4A3BP, Length 5,651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-203ENST00000380494 KRTAP12-1P59990 96 aa8.47□□□□□ -1.05
COL4A3BP-203ENST00000380494 UNC80Q8N2C7 3258 aa8.45□□□□□ -1.06
COL4A3BP-203ENST00000380494 WDFY4Q6ZS81 3184 aa8.45□□□□□ -1.06
COL4A3BP-203ENST00000380494 LRBAP50851 2863 aa8.44□□□□□ -1.06
COL4A3BP-203ENST00000380494 RANBP2P49792 3224 aaKnown RBP8.43□□□□□ -1.06
COL4A3BP-203ENST00000380494 KRTAP10-10P60014 251 aa8.37□□□□□ -1.07
COL4A3BP-203ENST00000380494 ASH1LQ9NR48 2969 aaKnown RBP8.36□□□□□ -1.07
COL4A3BP-203ENST00000380494 PRUNE2Q8WUY3 3088 aa8.36□□□□□ -1.07
COL4A3BP-203ENST00000380494 VPS13AQ96RL7 3174 aa8.35□□□□□ -1.07
COL4A3BP-203ENST00000380494 KRTAP3-1Q9BYR8 98 aa8.34□□□□□ -1.07
COL4A3BP-203ENST00000380494 KRTAP15-1Q3LI76 137 aa8.34□□□□□ -1.08
COL4A3BP-203ENST00000380494 LAMA3Q16787 3333 aa8.33□□□□□ -1.08
COL4A3BP-203ENST00000380494 UTP20O75691 2785 aaKnown RBP8.31□□□□□ -1.08
COL4A3BP-203ENST00000380494 ZZEF1O43149 2961 aa8.27□□□□□ -1.09
COL4A3BP-203ENST00000380494 LAMA1P25391 3075 aa8.22□□□□□ -1.09
COL4A3BP-203ENST00000380494 HIVEP1P15822 2718 aa8.2□□□□□ -1.1
COL4A3BP-203ENST00000380494 KRTAP10-6P60371 365 aaPredicted RBP8.19□□□□□ -1.1
COL4A3BP-203ENST00000380494 CELSR3Q9NYQ7 3312 aa8.19□□□□□ -1.1
COL4A3BP-203ENST00000380494 NIPBLQ6KC79 2804 aaeCLIP8.18□□□□□ -1.1
COL4A3BP-203ENST00000380494 BRCA2P51587 3418 aa8.16□□□□□ -1.1
COL4A3BP-203ENST00000380494 INE1O15225 51 aa8.16□□□□□ -1.1
COL4A3BP-203ENST00000380494 ADGRG4Q8IZF6 3080 aa8.15□□□□□ -1.1
COL4A3BP-203ENST00000380494 ATMQ13315 3056 aa8.14□□□□□ -1.11
COL4A3BP-203ENST00000380494 TGP01266 2768 aa8.13□□□□□ -1.11
COL4A3BP-203ENST00000380494 DNAH14Q0VDD8 3507 aa8.13□□□□□ -1.11
COL4A3BP-203ENST00000380494 TACC2O95359 2948 aa8.12□□□□□ -1.11
COL4A3BP-203ENST00000380494 XIRP2A4UGR9 3374 aa8.12□□□□□ -1.11
COL4A3BP-203ENST00000380494 DMXL2Q8TDJ6 3036 aa8.12□□□□□ -1.11
COL4A3BP-203ENST00000380494 CDH23Q9H251 3354 aa8.08□□□□□ -1.12
COL4A3BP-203ENST00000380494 COL6A3P12111 3177 aa8.05□□□□□ -1.12
COL4A3BP-203ENST00000380494 VCANP13611 3396 aa8.04□□□□□ -1.12
COL4A3BP-203ENST00000380494 HRNRQ86YZ3 2850 aaPredicted RBP8.04□□□□□ -1.12
COL4A3BP-203ENST00000380494 FRYLO94915 3013 aa8.03□□□□□ -1.12
COL4A3BP-203ENST00000380494 FLNCQ14315 2725 aa8.03□□□□□ -1.12
COL4A3BP-203ENST00000380494 REV3LO60673 3130 aa8.02□□□□□ -1.13
COL4A3BP-203ENST00000380494 COL12A1Q99715 3063 aa7.99□□□□□ -1.13
COL4A3BP-203ENST00000380494 CELSR2Q9HCU4 2923 aa7.94□□□□□ -1.14
COL4A3BP-203ENST00000380494 TNRC18O15417 2968 aaPredicted RBP7.93□□□□□ -1.14
COL4A3BP-203ENST00000380494 BOD1L1Q8NFC6 3051 aa7.93□□□□□ -1.14
COL4A3BP-203ENST00000380494 KRTAP3-2Q9BYR7 98 aa7.89□□□□□ -1.15
COL4A3BP-203ENST00000380494 SZT2Q5T011 3432 aa7.86□□□□□ -1.15
COL4A3BP-203ENST00000380494 EYSQ5T1H1 3165 aa7.86□□□□□ -1.15
COL4A3BP-203ENST00000380494 DCHS2Q6V1P9 2916 aa7.85□□□□□ -1.15
COL4A3BP-203ENST00000380494 KRTAP3-3Q9BYR6 98 aa7.81□□□□□ -1.16
COL4A3BP-203ENST00000380494 ZANQ9Y493 2812 aa7.77□□□□□ -1.17
COL4A3BP-203ENST00000380494 KRTAP23-1A1A580 65 aa7.76□□□□□ -1.17
COL4A3BP-203ENST00000380494 DMXL1Q9Y485 3027 aa7.76□□□□□ -1.17
COL4A3BP-203ENST00000380494 CFAP47Q6ZTR5 3102 aa7.75□□□□□ -1.17
COL4A3BP-203ENST00000380494 TENM4Q6N022 2769 aa7.72□□□□□ -1.17
COL4A3BP-203ENST00000380494 NF1P21359 2839 aa7.71□□□□□ -1.18
COL4A3BP-203ENST00000380494 USP34Q70CQ2 3546 aa7.7□□□□□ -1.18
COL4A3BP-203ENST00000380494 SPTBN5Q9NRC6 3674 aaKnown RBP7.69□□□□□ -1.18
COL4A3BP-203ENST00000380494 FBN2P35556 2912 aa7.68□□□□□ -1.18
COL4A3BP-203ENST00000380494 CRYBG3Q68DQ2 2970 aa7.66□□□□□ -1.18
COL4A3BP-203ENST00000380494 TENM2Q9NT68 2774 aa7.66□□□□□ -1.18
COL4A3BP-203ENST00000380494 CELSR1Q9NYQ6 3014 aa7.62□□□□□ -1.19
COL4A3BP-203ENST00000380494 TENM3Q9P273 2699 aa7.59□□□□□ -1.19
COL4A3BP-203ENST00000380494 PDZD2O15018 2839 aa7.57□□□□□ -1.2
COL4A3BP-203ENST00000380494 KRTAP10-12P60413 245 aa7.56□□□□□ -1.2
COL4A3BP-203ENST00000380494 TENM1Q9UKZ4 2725 aa7.52□□□□□ -1.21
COL4A3BP-203ENST00000380494 MXRA5Q9NR99 2828 aa7.48□□□□□ -1.21
COL4A3BP-203ENST00000380494 MT1HL1P0DM35 61 aa7.43□□□□□ -1.22
COL4A3BP-203ENST00000380494 SPEGQ15772 3267 aa7.43□□□□□ -1.22
COL4A3BP-203ENST00000380494 KRTAP12-3P60328 96 aa7.42□□□□□ -1.22
COL4A3BP-203ENST00000380494 SRRM2Q9UQ35 2752 aaKnown RBP7.39□□□□□ -1.23
COL4A3BP-203ENST00000380494 ANK3Q12955 4377 aaKnown RBP7.38□□□□□ -1.23
COL4A3BP-203ENST00000380494 LOC400499M0QZD8 3231 aa7.36□□□□□ -1.23
COL4A3BP-203ENST00000380494 ZFHX3Q15911 3703 aa7.36□□□□□ -1.23
COL4A3BP-203ENST00000380494 LCE3AQ5TA76 89 aa7.34□□□□□ -1.23
COL4A3BP-203ENST00000380494 KRTAP10-4P60372 401 aaPredicted RBP7.32□□□□□ -1.24
COL4A3BP-203ENST00000380494 WDFY3Q8IZQ1 3526 aa7.27□□□□□ -1.25
COL4A3BP-203ENST00000380494 PKD1L1Q8TDX9 2849 aa7.26□□□□□ -1.25
COL4A3BP-203ENST00000380494 DCHS1Q96JQ0 3298 aa7.24□□□□□ -1.25
COL4A3BP-203ENST00000380494 ZFHX4Q86UP3 3567 aa7.18□□□□□ -1.26
COL4A3BP-203ENST00000380494 LORP23490 312 aaPredicted RBP7.15□□□□□ -1.26
COL4A3BP-203ENST00000380494 CSMD1Q96PZ7 3565 aa7.14□□□□□ -1.27
COL4A3BP-203ENST00000380494 HUWE1Q7Z6Z7 4374 aaKnown RBP7.14□□□□□ -1.27
COL4A3BP-203ENST00000380494 ALMS1Q8TCU4 4167 aa7.12□□□□□ -1.27
COL4A3BP-203ENST00000380494 CRCT1Q9UGL9 99 aa7.12□□□□□ -1.27
COL4A3BP-203ENST00000380494 MEGF8Q7Z7M0 2845 aa7.09□□□□□ -1.27
COL4A3BP-203ENST00000380494 MYO15AQ9UKN7 3530 aa7.07□□□□□ -1.28
COL4A3BP-203ENST00000380494 RELNP78509 3460 aa7.07□□□□□ -1.28
COL4A3BP-203ENST00000380494 ASPMQ8IZT6 3477 aa7.06□□□□□ -1.28
COL4A3BP-203ENST00000380494 FBN3Q75N90 2809 aa7.05□□□□□ -1.28
COL4A3BP-203ENST00000380494 VWFP04275 2813 aa6.99□□□□□ -1.29
COL4A3BP-203ENST00000380494 SMG1Q96Q15 3661 aaKnown RBP6.94□□□□□ -1.3
COL4A3BP-203ENST00000380494 DNAH2Q9P225 4427 aa6.93□□□□□ -1.3
COL4A3BP-203ENST00000380494 NBPF19A0A087WUL8 3843 aa6.93□□□□□ -1.3
COL4A3BP-203ENST00000380494 KRTAP10-5P60370 271 aa6.88□□□□□ -1.31
COL4A3BP-203ENST00000380494 OTOGQ6ZRI0 2925 aa6.87□□□□□ -1.31
COL4A3BP-203ENST00000380494 COL7A1Q02388 2944 aa6.85□□□□□ -1.31
COL4A3BP-203ENST00000380494 KRTAP4-5Q9BYR2 181 aa6.79□□□□□ -1.32
COL4A3BP-203ENST00000380494 LAMA5O15230 3695 aa6.76□□□□□ -1.33
COL4A3BP-203ENST00000380494 FBN1P35555 2871 aaKnown RBP6.76□□□□□ -1.33
COL4A3BP-203ENST00000380494 DNAH11Q96DT5 4516 aa6.76□□□□□ -1.33
COL4A3BP-203ENST00000380494 DNAH10Q8IVF4 4471 aa6.73□□□□□ -1.33
COL4A3BP-203ENST00000380494 TRRAPQ9Y4A5 3859 aa6.71□□□□□ -1.34
COL4A3BP-203ENST00000380494 SPRR2GQ9BYE4 73 aa6.7□□□□□ -1.34
COL4A3BP-203ENST00000380494 KRTAP8-1Q8IUC2 63 aa6.69□□□□□ -1.34
COL4A3BP-203ENST00000380494 SVEP1Q4LDE5 3571 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms